Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.47083 * 2 1 4 4 C 1.34509 * 125.78661 * 90.00436 * 3 2 1 5 5 C 1.41384 * 106.83934 * 179.75038 * 4 3 2 6 6 C 1.34514 * 106.83896 * 0.37102 * 5 4 3 7 7 C 1.50699 * 125.78779 * 179.88980 * 6 5 4 8 8 H 1.09004 * 109.49013 * 16.36026 * 7 6 5 9 9 C 1.53106 * 109.40985 * 256.37135 * 7 6 5 10 10 C 1.53182 * 109.15301 * 297.49471 * 9 7 6 11 11 C 1.53173 * 109.10861 * 303.15083 * 10 9 7 12 12 C 1.53090 * 109.16500 * 56.93757 * 11 10 9 13 13 H 1.09002 * 109.47786 * 62.37484 * 12 11 10 14 14 C 1.50702 * 109.47973 * 182.39407 * 12 11 10 15 15 H 1.07998 * 120.00108 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99920 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99928 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 120.00014 * 0.02562 * 16 14 12 19 19 H 1.48491 * 109.47510 * 89.99619 * 18 16 14 20 20 H 1.48502 * 109.46793 * 210.00050 * 18 16 14 21 21 H 1.48498 * 109.47019 * 329.99587 * 18 16 14 22 22 O 1.42896 * 109.41500 * 302.39048 * 12 11 10 23 23 O 1.34296 * 108.42314 * 359.62618 * 6 5 4 24 24 H 1.08997 * 109.46876 * 59.99570 * 1 2 3 25 25 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46882 * 299.99859 * 1 2 3 27 27 H 1.09001 * 109.46882 * 240.00141 * 2 1 3 28 28 H 1.08993 * 109.47311 * 120.00275 * 2 1 3 29 29 H 1.08000 * 126.58355 * 359.97438 * 4 3 2 30 30 H 1.08001 * 126.58058 * 180.23035 * 5 4 3 31 31 H 1.09000 * 109.45551 * 177.63744 * 9 7 6 32 32 H 1.08994 * 109.59599 * 57.44033 * 9 7 6 33 33 H 1.09003 * 109.53952 * 183.24061 * 10 9 7 34 34 H 1.08999 * 109.54404 * 63.06558 * 10 9 7 35 35 H 1.09003 * 109.52059 * 176.84720 * 11 10 9 36 36 H 1.09003 * 109.52411 * 296.96406 * 11 10 9 37 37 H 0.97002 * 119.99766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2947 2.1624 1.0911 5 6 2.7459 3.4212 0.6321 6 6 2.7245 3.3763 -0.7122 7 6 3.1219 4.4972 -1.6378 8 1 3.6970 5.2395 -1.0842 9 6 1.8633 5.1519 -2.2136 10 6 1.0932 4.1186 -3.0416 11 6 2.0135 3.5640 -4.1332 12 6 3.2651 2.9702 -3.4815 13 1 2.9796 2.1395 -2.8362 14 6 4.2027 2.4753 -4.5526 15 1 3.9336 2.5744 -5.5938 16 6 5.4045 1.8968 -4.2032 17 7 6.2229 1.4653 -5.1380 18 14 5.8702 1.7260 -2.4024 19 1 5.3772 0.4244 -1.8848 20 1 7.3477 1.7855 -2.2655 21 1 5.2562 2.8323 -1.6251 22 8 3.9180 3.9755 -2.7037 23 8 2.2946 2.1613 -1.0894 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.1853 1.8541 2.1204 30 1 3.0475 4.2589 1.2434 31 1 2.1486 5.9894 -2.8502 32 1 1.2326 5.5099 -1.3999 33 1 0.2263 4.5929 -3.5017 34 1 0.7635 3.3055 -2.3948 35 1 1.4901 2.7876 -4.6912 36 1 2.3010 4.3682 -4.8105 37 1 7.0682 1.0580 -4.8921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309464512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -40.896015 kcal Electronic energy + Delta-G solvation = -19610.665165 eV Core-core repulsion = 16740.463109 eV Total energy + Delta-G solvation = -2870.202055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30239 -38.45127 -33.99670 -33.17939 -32.78903 -32.36184 -30.70525 -28.12606 -25.83963 -24.16949 -22.61274 -21.58098 -21.53082 -19.87547 -19.18851 -16.83884 -16.24680 -15.98470 -15.25153 -15.04234 -14.40881 -14.11216 -13.82319 -13.64230 -13.12113 -12.94199 -12.69750 -12.44976 -12.27850 -12.22801 -11.97268 -11.47726 -11.14322 -11.06006 -10.98764 -10.68818 -10.52995 -10.00303 -9.96415 -9.63571 -9.49228 -9.02980 -8.52054 -8.21332 -7.83151 -6.09534 -4.16750 2.11780 2.94419 3.25576 3.44667 3.50316 3.73015 4.56507 4.74999 4.88605 5.03576 5.19481 5.26261 5.30027 5.38326 5.44044 5.49300 5.57352 5.61800 5.80238 5.88103 5.89647 5.98983 6.09991 6.15027 6.19222 6.25296 6.34037 6.41779 6.52986 6.70285 6.71195 6.80005 6.90256 7.32748 7.61572 7.70210 8.42046 8.50627 8.93259 9.55287 11.00504 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.010607 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.180892 B = 2639.213646 C = 3119.639865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.029 4.029 4 C -0.213 4.213 5 C -0.224 4.224 6 C -0.010 4.010 7 C 0.157 3.843 8 H 0.111 0.889 9 C -0.141 4.141 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.173 3.827 13 H 0.041 0.959 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.085 3.915 17 N -0.891 5.891 18 Si 0.870 3.130 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.222 1.222 22 O -0.362 6.362 23 O -0.147 6.147 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 1.962 11.785 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.079 4.079 4 C -0.233 4.233 5 C -0.243 4.243 6 C -0.061 4.061 7 C 0.097 3.903 8 H 0.128 0.872 9 C -0.179 4.179 10 C -0.162 4.162 11 C -0.169 4.169 12 C 0.118 3.882 13 H 0.058 0.942 14 C -0.551 4.551 15 H 0.097 0.903 16 C -0.119 4.119 17 N -0.528 5.528 18 Si 0.697 3.303 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.145 1.145 22 O -0.281 6.281 23 O -0.043 6.043 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.452 1.849 11.391 15.570 hybrid contribution 0.246 -0.166 1.184 1.221 sum -10.205 1.683 12.576 16.283 Atomic orbital electron populations 1.21761 0.94204 1.01927 1.02469 1.20047 0.96124 0.88146 1.03950 1.22565 1.04635 0.95443 0.85245 1.21383 1.08330 0.94757 0.98781 1.21438 1.09662 0.99445 0.93795 1.23650 1.01133 0.86127 0.95174 1.20754 0.92683 0.89116 0.87733 0.87164 1.22156 0.96874 0.99026 0.99856 1.21671 0.98000 0.98246 0.98237 1.22021 0.97154 1.00468 0.97302 1.20551 0.91009 0.86101 0.90501 0.94245 1.20952 1.03396 1.37687 0.93076 0.90267 1.25031 0.95624 0.93245 0.98034 1.69935 1.10235 1.39301 1.33358 0.87044 0.77143 0.79689 0.86437 1.21405 1.22119 1.14476 1.88530 1.40163 1.57645 1.41765 1.84430 1.64286 1.22109 1.33458 0.92183 0.91925 0.92492 0.89932 0.89439 0.84254 0.84058 0.90507 0.91879 0.92708 0.92168 0.91987 0.92018 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.90 37.16 0.37 -1.25 16 2 C -0.05 -0.61 6.47 -27.88 -0.18 -0.79 16 3 C -0.03 -0.49 6.58 -35.62 -0.23 -0.72 16 4 C -0.21 -3.39 10.81 -39.70 -0.43 -3.82 16 5 C -0.22 -3.76 10.80 -39.70 -0.43 -4.19 16 6 C -0.01 -0.19 4.91 -35.63 -0.17 -0.36 16 7 C 0.16 2.95 3.66 -27.83 -0.10 2.85 16 8 H 0.11 1.82 8.12 -51.93 -0.42 1.39 16 9 C -0.14 -2.28 5.63 -26.58 -0.15 -2.43 16 10 C -0.12 -2.13 5.71 -26.55 -0.15 -2.29 16 11 C -0.13 -2.74 5.36 -26.60 -0.14 -2.88 16 12 C 0.17 4.25 1.65 -27.84 -0.05 4.20 16 13 H 0.04 1.02 4.40 -51.93 -0.23 0.79 16 14 C -0.51 -15.01 9.38 -34.44 -0.32 -15.33 16 15 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 16 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 17 N -0.89 -27.89 13.96 55.43 0.77 -27.12 16 18 Si 0.87 23.00 26.99 -169.99 -4.59 18.41 16 19 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.22 -5.67 4.67 56.52 0.26 -5.40 16 22 O -0.36 -8.61 7.16 -35.96 -0.26 -8.87 16 23 O -0.15 -2.95 6.22 4.99 0.03 -2.92 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 6.42 -51.93 -0.33 0.74 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -32.57 292.29 -7.48 -40.05 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.75 Total: 0.58 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.09 Total: -24.54 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.23 Total: -11.79 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.59 Total: 18.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.57 -7.48 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.847 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds