Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.47083 * 2 1 4 4 C 1.34509 * 125.78661 * 90.00436 * 3 2 1 5 5 C 1.41384 * 106.83934 * 179.75038 * 4 3 2 6 6 C 1.34514 * 106.83896 * 0.37102 * 5 4 3 7 7 C 1.50699 * 125.78779 * 179.88980 * 6 5 4 8 8 H 1.09004 * 109.49013 * 16.36026 * 7 6 5 9 9 C 1.53106 * 109.40985 * 256.37135 * 7 6 5 10 10 C 1.53182 * 109.15301 * 297.49471 * 9 7 6 11 11 C 1.53173 * 109.10861 * 303.15083 * 10 9 7 12 12 C 1.53090 * 109.16500 * 56.93757 * 11 10 9 13 13 H 1.09002 * 109.47786 * 62.37484 * 12 11 10 14 14 C 1.50702 * 109.47973 * 182.39407 * 12 11 10 15 15 H 1.07998 * 120.00108 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99920 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99928 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 120.00014 * 0.02562 * 16 14 12 19 19 H 1.48491 * 109.47510 * 89.99619 * 18 16 14 20 20 H 1.48502 * 109.46793 * 210.00050 * 18 16 14 21 21 H 1.48498 * 109.47019 * 329.99587 * 18 16 14 22 22 O 1.42896 * 109.41500 * 302.39048 * 12 11 10 23 23 O 1.34296 * 108.42314 * 359.62618 * 6 5 4 24 24 H 1.08997 * 109.46876 * 59.99570 * 1 2 3 25 25 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46882 * 299.99859 * 1 2 3 27 27 H 1.09001 * 109.46882 * 240.00141 * 2 1 3 28 28 H 1.08993 * 109.47311 * 120.00275 * 2 1 3 29 29 H 1.08000 * 126.58355 * 359.97438 * 4 3 2 30 30 H 1.08001 * 126.58058 * 180.23035 * 5 4 3 31 31 H 1.09000 * 109.45551 * 177.63744 * 9 7 6 32 32 H 1.08994 * 109.59599 * 57.44033 * 9 7 6 33 33 H 1.09003 * 109.53952 * 183.24061 * 10 9 7 34 34 H 1.08999 * 109.54404 * 63.06558 * 10 9 7 35 35 H 1.09003 * 109.52059 * 176.84720 * 11 10 9 36 36 H 1.09003 * 109.52411 * 296.96406 * 11 10 9 37 37 H 0.97002 * 119.99766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2947 2.1624 1.0911 5 6 2.7459 3.4212 0.6321 6 6 2.7245 3.3763 -0.7122 7 6 3.1219 4.4972 -1.6378 8 1 3.6970 5.2395 -1.0842 9 6 1.8633 5.1519 -2.2136 10 6 1.0932 4.1186 -3.0416 11 6 2.0135 3.5640 -4.1332 12 6 3.2651 2.9702 -3.4815 13 1 2.9796 2.1395 -2.8362 14 6 4.2027 2.4753 -4.5526 15 1 3.9336 2.5744 -5.5938 16 6 5.4045 1.8968 -4.2032 17 7 6.2229 1.4653 -5.1380 18 14 5.8702 1.7260 -2.4024 19 1 5.3772 0.4244 -1.8848 20 1 7.3477 1.7855 -2.2655 21 1 5.2562 2.8323 -1.6251 22 8 3.9180 3.9755 -2.7037 23 8 2.2946 2.1613 -1.0894 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.1853 1.8541 2.1204 30 1 3.0475 4.2589 1.2434 31 1 2.1486 5.9894 -2.8502 32 1 1.2326 5.5099 -1.3999 33 1 0.2263 4.5929 -3.5017 34 1 0.7635 3.3055 -2.3948 35 1 1.4901 2.7876 -4.6912 36 1 2.3010 4.3682 -4.8105 37 1 7.0682 1.0580 -4.8921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309464512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -60.612564 kcal Electronic energy + Delta-G solvation = -19611.520139 eV Core-core repulsion = 16740.463109 eV Total energy + Delta-G solvation = -2871.057029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.60781 -40.06869 -35.21293 -34.92609 -34.38111 -33.94044 -32.34010 -29.53256 -27.60270 -25.51622 -23.91170 -23.27116 -22.86442 -21.17383 -20.66294 -19.02627 -17.67832 -17.48869 -16.83394 -16.52826 -15.91264 -15.58961 -15.20353 -15.08155 -14.79063 -14.41135 -14.09227 -13.94009 -13.65565 -13.58548 -13.21316 -13.01289 -12.76207 -12.46223 -12.40548 -12.10534 -11.97689 -11.90307 -11.61838 -11.49743 -11.02440 -10.82799 -10.59837 -9.94394 -9.13134 -8.40277 -6.50885 0.82220 1.30027 1.32156 1.60843 1.73456 2.06181 2.37270 2.85912 3.50898 3.68813 3.88690 3.97496 4.06622 4.13349 4.19835 4.24085 4.35375 4.36488 4.58462 4.60902 4.74695 4.88047 4.89732 4.93305 4.98601 5.01845 5.05543 5.12777 5.18001 5.22197 5.25194 5.33457 5.55044 5.65085 5.74086 6.20461 6.32224 6.54394 6.79517 7.25386 8.73764 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.010607 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.180892 B = 2639.213646 C = 3119.639865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.046 4.046 4 C -0.213 4.213 5 C -0.214 4.214 6 C -0.045 4.045 7 C 0.146 3.854 8 H 0.136 0.864 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.130 4.130 12 C 0.182 3.818 13 H 0.035 0.965 14 C -0.527 4.527 15 H 0.043 0.957 16 C 0.032 3.968 17 N -0.937 5.937 18 Si 0.930 3.070 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.206 1.206 22 O -0.389 6.389 23 O -0.178 6.178 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 2.817 15.051 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.096 4.096 4 C -0.232 4.232 5 C -0.233 4.233 6 C -0.095 4.095 7 C 0.087 3.913 8 H 0.153 0.847 9 C -0.172 4.172 10 C -0.153 4.153 11 C -0.168 4.168 12 C 0.127 3.873 13 H 0.052 0.948 14 C -0.564 4.564 15 H 0.061 0.939 16 C -0.167 4.167 17 N -0.576 5.576 18 Si 0.755 3.245 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.128 1.128 22 O -0.309 6.309 23 O -0.076 6.076 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.968 2.722 14.665 19.123 hybrid contribution 0.640 -0.427 0.177 0.790 sum -11.327 2.295 14.841 18.811 Atomic orbital electron populations 1.21723 0.92472 1.03298 1.02190 1.20258 0.97628 0.86405 1.04350 1.23315 1.04579 0.96648 0.85011 1.21781 1.07332 0.94164 0.99913 1.21847 1.07874 1.00470 0.93126 1.23693 1.03485 0.86260 0.96078 1.21175 0.93761 0.89753 0.86571 0.84685 1.22148 0.95962 0.98451 1.00678 1.21599 0.98100 0.98560 0.97024 1.21940 0.96540 1.00045 0.98306 1.20199 0.90889 0.86720 0.89511 0.94761 1.21307 1.04217 1.37837 0.93048 0.93923 1.25827 0.95739 0.93184 1.01985 1.70052 1.11039 1.41196 1.35350 0.86117 0.76611 0.79897 0.81892 1.21469 1.22086 1.12808 1.88343 1.41669 1.57434 1.43419 1.84338 1.65111 1.22941 1.35180 0.93797 0.89766 0.91362 0.91620 0.86902 0.81189 0.81345 0.89738 0.88636 0.89864 0.92710 0.92599 0.92806 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.90 71.98 0.71 -2.04 16 2 C -0.05 -1.22 6.47 29.85 0.19 -1.02 16 3 C -0.05 -1.46 6.58 24.83 0.16 -1.30 16 4 C -0.21 -5.96 10.81 22.19 0.24 -5.72 16 5 C -0.21 -6.35 10.80 22.19 0.24 -6.11 16 6 C -0.05 -1.60 4.91 24.83 0.12 -1.47 16 7 C 0.15 5.12 3.66 29.88 0.11 5.23 16 8 H 0.14 3.98 8.12 -2.38 -0.02 3.96 16 9 C -0.14 -3.91 5.63 30.69 0.17 -3.74 16 10 C -0.12 -3.73 5.71 30.71 0.18 -3.55 16 11 C -0.13 -5.44 5.36 30.68 0.16 -5.28 16 12 C 0.18 9.04 1.65 29.88 0.05 9.09 16 13 H 0.04 1.79 4.40 -2.39 -0.01 1.78 16 14 C -0.53 -31.98 9.38 25.60 0.24 -31.74 16 15 H 0.04 2.80 7.99 -2.91 -0.02 2.78 16 16 C 0.03 2.00 5.47 84.65 0.46 2.47 16 17 N -0.94 -60.88 13.96 21.45 0.30 -60.58 16 18 Si 0.93 48.46 26.99 68.60 1.85 50.31 16 19 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 20 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.21 -10.14 4.67 99.48 0.46 -9.68 16 22 O -0.39 -18.18 7.16 -148.28 -1.06 -19.24 16 23 O -0.18 -6.90 6.22 -1.76 -0.01 -6.91 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 1.85 6.42 -2.39 -0.02 1.83 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -72.91 292.29 4.92 -67.99 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.80 Total: 13.63 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.04 Total: -45.19 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.07 Total: -26.16 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.85 Total: 50.31 kcal Total: -72.91 4.92 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.374 kcal (2) G-P(sol) polarization free energy of solvation -72.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds