Wall clock time and date at job start Mon Mar 30 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47027 * 2 1 4 4 C 1.34511 * 125.79125 * 89.99926 * 3 2 1 5 5 C 1.41383 * 106.84019 * 179.79162 * 4 3 2 6 6 C 1.34510 * 106.84003 * 0.37478 * 5 4 3 7 7 C 1.50700 * 125.79015 * 179.88829 * 6 5 4 8 8 H 1.09005 * 109.48163 * 343.56451 * 7 6 5 9 9 C 1.53096 * 109.48201 * 103.58288 * 7 6 5 10 10 C 1.53178 * 109.15900 * 62.38791 * 9 7 6 11 11 C 1.53183 * 109.03712 * 56.98468 * 10 9 7 12 12 C 1.53097 * 109.15957 * 303.01553 * 11 10 9 13 13 H 1.08998 * 109.48022 * 297.61751 * 12 11 10 14 14 C 1.50698 * 109.47844 * 177.59379 * 12 11 10 15 15 H 1.07997 * 119.99955 * 0.02664 * 14 12 11 16 16 C 1.37880 * 119.99971 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99556 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00082 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47449 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47190 * 300.00237 * 18 16 14 21 21 H 1.48500 * 109.47100 * 60.00079 * 18 16 14 22 22 O 1.42901 * 109.42359 * 57.60568 * 12 11 10 23 23 O 1.34302 * 108.42246 * 359.62298 * 6 5 4 24 24 H 1.09001 * 109.47021 * 60.00560 * 1 2 3 25 25 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47275 * 299.99889 * 1 2 3 27 27 H 1.08997 * 109.47275 * 240.00111 * 2 1 3 28 28 H 1.09004 * 109.47324 * 120.00146 * 2 1 3 29 29 H 1.07998 * 126.57917 * 0.02562 * 4 3 2 30 30 H 1.07995 * 126.58089 * 180.23546 * 5 4 3 31 31 H 1.08999 * 109.52310 * 302.48206 * 9 7 6 32 32 H 1.09002 * 109.57536 * 182.32455 * 9 7 6 33 33 H 1.08996 * 109.54577 * 297.11022 * 10 9 7 34 34 H 1.09008 * 109.53900 * 176.84336 * 10 9 7 35 35 H 1.08998 * 109.52187 * 183.11006 * 11 10 9 36 36 H 1.08995 * 109.57457 * 62.95442 * 11 10 9 37 37 H 0.96994 * 120.00508 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7449 3.4216 0.6319 6 6 2.7230 3.3768 -0.7122 7 6 3.1193 4.4980 -1.6380 8 1 3.1477 5.4354 -1.0823 9 6 4.5037 4.2104 -2.2249 10 6 4.4410 2.9237 -3.0537 11 6 3.3707 3.0799 -4.1385 12 6 2.0301 3.4112 -3.4776 13 1 1.7291 2.5858 -2.8324 14 6 0.9845 3.6246 -4.5416 15 1 1.2489 3.5328 -5.5847 16 6 -0.3098 3.9370 -4.1835 17 7 -0.6319 4.0483 -2.9132 18 14 -1.6057 4.2022 -5.5024 19 1 -2.9061 4.5235 -4.8612 20 1 -1.1951 5.3269 -6.3808 21 1 -1.7464 2.9664 -6.3137 22 8 2.1659 4.6008 -2.6976 23 8 2.2937 2.1615 -1.0895 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1859 1.8540 2.1203 30 1 3.0462 4.2594 1.2431 31 1 5.2240 4.0879 -1.4160 32 1 4.8096 5.0399 -2.8624 33 1 4.1846 2.0851 -2.4064 34 1 5.4094 2.7431 -3.5204 35 1 3.2808 2.1488 -4.6981 36 1 3.6522 3.8862 -4.8157 37 1 0.0411 3.9109 -2.2284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309464514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:36 Heat of formation + Delta-G solvation = -53.258517 kcal Electronic energy + Delta-G solvation = -19542.275118 eV Core-core repulsion = 16671.536984 eV Total energy + Delta-G solvation = -2870.738134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.15466 -38.31152 -33.86161 -33.29272 -32.65665 -32.24078 -30.29347 -27.82226 -25.29017 -23.91585 -22.45399 -21.83840 -21.42677 -19.80616 -19.15048 -17.14170 -16.01000 -15.87517 -14.88431 -14.68121 -14.23593 -13.89309 -13.76780 -13.59728 -13.38887 -12.77045 -12.73499 -12.28526 -12.06865 -11.83642 -11.62608 -11.31387 -11.24512 -10.81143 -10.79304 -10.56794 -10.35214 -10.30078 -10.02090 -9.79241 -9.32376 -8.60439 -8.36669 -8.12018 -7.74302 -6.30807 -4.09339 2.25644 3.07425 3.41008 3.45761 3.49551 3.66693 4.55156 4.89057 5.05470 5.16819 5.32072 5.35639 5.46164 5.48542 5.52611 5.59408 5.68891 5.71346 5.95130 5.95863 6.05778 6.08555 6.19735 6.24664 6.33495 6.42518 6.46077 6.51683 6.62767 6.76536 6.77693 6.86541 7.03065 7.47078 7.75872 8.15947 8.42569 8.69693 8.93069 9.72743 11.09754 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.009712 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.011910 B = 2882.276033 C = 3725.086288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.027 4.027 4 C -0.214 4.214 5 C -0.224 4.224 6 C -0.008 4.008 7 C 0.157 3.843 8 H 0.108 0.892 9 C -0.142 4.142 10 C -0.123 4.123 11 C -0.135 4.135 12 C 0.190 3.810 13 H 0.038 0.962 14 C -0.602 4.602 15 H 0.055 0.945 16 C 0.032 3.968 17 N -0.886 5.886 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.288 1.288 22 O -0.360 6.360 23 O -0.144 6.144 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 -4.970 6.177 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.077 4.077 4 C -0.233 4.233 5 C -0.243 4.243 6 C -0.059 4.059 7 C 0.097 3.903 8 H 0.126 0.874 9 C -0.179 4.179 10 C -0.161 4.161 11 C -0.173 4.173 12 C 0.136 3.864 13 H 0.055 0.945 14 C -0.639 4.639 15 H 0.074 0.926 16 C -0.177 4.177 17 N -0.520 5.520 18 Si 0.895 3.105 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.214 1.214 22 O -0.279 6.279 23 O -0.040 6.040 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.307 -4.548 5.606 8.960 hybrid contribution 1.912 -0.410 0.620 2.051 sum 7.219 -4.958 6.227 10.745 Atomic orbital electron populations 1.21785 0.93954 1.01744 1.03312 1.19998 0.96502 0.87996 1.03177 1.22543 1.04585 0.95354 0.85256 1.21349 1.08509 0.94785 0.98698 1.21412 1.09762 0.99359 0.93799 1.23602 1.01243 0.86032 0.95061 1.20762 0.89904 0.91769 0.87842 0.87403 1.22158 0.96802 0.99241 0.99733 1.21662 0.98963 0.97172 0.98273 1.22093 0.96890 1.00917 0.97362 1.20323 0.91386 0.84415 0.90241 0.94509 1.21896 0.94418 1.55080 0.92532 0.92630 1.25844 0.98592 0.92920 1.00317 1.70627 1.38948 1.42075 1.00387 0.83595 0.75872 0.76531 0.74490 1.20712 1.21344 1.21409 1.88475 1.57334 1.40411 1.41703 1.84432 1.64112 1.22037 1.33381 0.91467 0.92136 0.92430 0.90472 0.89674 0.84386 0.84198 0.91985 0.90763 0.92201 0.92937 0.92438 0.92513 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.89 37.16 0.37 -1.81 16 2 C -0.04 -0.57 6.47 -27.88 -0.18 -0.75 16 3 C -0.03 -0.50 6.57 -35.63 -0.23 -0.73 16 4 C -0.21 -3.67 10.81 -39.70 -0.43 -4.10 16 5 C -0.22 -4.07 10.80 -39.70 -0.43 -4.50 16 6 C -0.01 -0.17 5.44 -35.63 -0.19 -0.36 16 7 C 0.16 3.22 3.77 -27.83 -0.11 3.11 16 8 H 0.11 1.97 8.12 -51.93 -0.42 1.54 16 9 C -0.14 -2.48 5.63 -26.59 -0.15 -2.63 16 10 C -0.12 -2.29 5.71 -26.54 -0.15 -2.44 16 11 C -0.13 -2.98 5.36 -26.59 -0.14 -3.12 16 12 C 0.19 5.01 1.77 -27.83 -0.05 4.96 16 13 H 0.04 1.05 4.86 -51.93 -0.25 0.79 16 14 C -0.60 -17.53 8.79 -34.44 -0.30 -17.84 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.03 0.95 5.40 -17.82 -0.10 0.85 16 17 N -0.89 -27.57 13.53 55.43 0.75 -26.82 16 18 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 O -0.36 -9.36 8.91 -35.79 -0.32 -9.68 16 23 O -0.14 -3.11 6.20 5.15 0.03 -3.08 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 34 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.28 8.91 6.47 -40.82 -0.26 8.64 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -32.59 297.40 -7.78 -40.37 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.55 Total: 3.59 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -2.10 Total: -29.37 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.75 Total: -26.82 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.29 Total: -12.76 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.59 -7.78 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.888 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds