Wall clock time and date at job start Mon Mar 30 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47027 * 2 1 4 4 C 1.34511 * 125.79125 * 89.99926 * 3 2 1 5 5 C 1.41383 * 106.84019 * 179.79162 * 4 3 2 6 6 C 1.34510 * 106.84003 * 0.37478 * 5 4 3 7 7 C 1.50700 * 125.79015 * 179.88829 * 6 5 4 8 8 H 1.09005 * 109.48163 * 343.56451 * 7 6 5 9 9 C 1.53096 * 109.48201 * 103.58288 * 7 6 5 10 10 C 1.53178 * 109.15900 * 62.38791 * 9 7 6 11 11 C 1.53183 * 109.03712 * 56.98468 * 10 9 7 12 12 C 1.53097 * 109.15957 * 303.01553 * 11 10 9 13 13 H 1.08998 * 109.48022 * 297.61751 * 12 11 10 14 14 C 1.50698 * 109.47844 * 177.59379 * 12 11 10 15 15 H 1.07997 * 119.99955 * 0.02664 * 14 12 11 16 16 C 1.37880 * 119.99971 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99556 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00082 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47449 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47190 * 300.00237 * 18 16 14 21 21 H 1.48500 * 109.47100 * 60.00079 * 18 16 14 22 22 O 1.42901 * 109.42359 * 57.60568 * 12 11 10 23 23 O 1.34302 * 108.42246 * 359.62298 * 6 5 4 24 24 H 1.09001 * 109.47021 * 60.00560 * 1 2 3 25 25 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47275 * 299.99889 * 1 2 3 27 27 H 1.08997 * 109.47275 * 240.00111 * 2 1 3 28 28 H 1.09004 * 109.47324 * 120.00146 * 2 1 3 29 29 H 1.07998 * 126.57917 * 0.02562 * 4 3 2 30 30 H 1.07995 * 126.58089 * 180.23546 * 5 4 3 31 31 H 1.08999 * 109.52310 * 302.48206 * 9 7 6 32 32 H 1.09002 * 109.57536 * 182.32455 * 9 7 6 33 33 H 1.08996 * 109.54577 * 297.11022 * 10 9 7 34 34 H 1.09008 * 109.53900 * 176.84336 * 10 9 7 35 35 H 1.08998 * 109.52187 * 183.11006 * 11 10 9 36 36 H 1.08995 * 109.57457 * 62.95442 * 11 10 9 37 37 H 0.96994 * 120.00508 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7449 3.4216 0.6319 6 6 2.7230 3.3768 -0.7122 7 6 3.1193 4.4980 -1.6380 8 1 3.1477 5.4354 -1.0823 9 6 4.5037 4.2104 -2.2249 10 6 4.4410 2.9237 -3.0537 11 6 3.3707 3.0799 -4.1385 12 6 2.0301 3.4112 -3.4776 13 1 1.7291 2.5858 -2.8324 14 6 0.9845 3.6246 -4.5416 15 1 1.2489 3.5328 -5.5847 16 6 -0.3098 3.9370 -4.1835 17 7 -0.6319 4.0483 -2.9132 18 14 -1.6057 4.2022 -5.5024 19 1 -2.9061 4.5235 -4.8612 20 1 -1.1951 5.3269 -6.3808 21 1 -1.7464 2.9664 -6.3137 22 8 2.1659 4.6008 -2.6976 23 8 2.2937 2.1615 -1.0895 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.1859 1.8540 2.1203 30 1 3.0462 4.2594 1.2431 31 1 5.2240 4.0879 -1.4160 32 1 4.8096 5.0399 -2.8624 33 1 4.1846 2.0851 -2.4064 34 1 5.4094 2.7431 -3.5204 35 1 3.2808 2.1488 -4.6981 36 1 3.6522 3.8862 -4.8157 37 1 0.0411 3.9109 -2.2284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309464514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:35 Heat of formation + Delta-G solvation = -72.561650 kcal Electronic energy + Delta-G solvation = -19543.112165 eV Core-core repulsion = 16671.536984 eV Total energy + Delta-G solvation = -2871.575180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.60355 -40.04887 -35.37230 -34.97598 -34.35294 -33.86002 -32.00520 -29.33797 -27.16986 -25.45566 -24.01072 -23.60879 -22.86993 -21.24095 -20.72345 -19.23645 -17.55830 -17.40090 -16.46825 -16.34808 -15.73843 -15.63842 -15.37173 -15.22141 -15.07330 -14.28010 -13.98382 -13.69282 -13.63124 -13.31574 -13.26001 -13.10115 -12.68523 -12.46804 -12.25898 -12.12608 -11.96893 -11.92718 -11.89673 -11.48992 -10.75895 -10.72221 -10.36844 -10.04623 -9.17341 -8.61250 -6.41305 0.81628 1.50300 1.59035 1.69836 1.78600 2.05761 2.55965 3.06143 3.52075 3.70209 3.84723 3.90005 4.02104 4.08172 4.17146 4.19657 4.31095 4.32709 4.53003 4.54969 4.71776 4.79954 4.83844 4.86881 4.92955 4.97016 5.01674 5.05765 5.14057 5.16301 5.23697 5.28811 5.58140 5.71516 6.02398 6.15222 6.34579 6.59017 6.84050 7.51220 8.77577 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.009712 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.011910 B = 2882.276033 C = 3725.086288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.046 4.046 4 C -0.214 4.214 5 C -0.218 4.218 6 C -0.044 4.044 7 C 0.145 3.855 8 H 0.126 0.874 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.131 4.131 12 C 0.191 3.809 13 H 0.016 0.984 14 C -0.627 4.627 15 H 0.052 0.948 16 C -0.018 4.018 17 N -0.914 5.914 18 Si 1.114 2.886 19 H -0.282 1.282 20 H -0.271 1.271 21 H -0.267 1.267 22 O -0.394 6.394 23 O -0.176 6.176 24 H 0.021 0.979 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 -5.504 7.077 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.096 4.096 4 C -0.233 4.233 5 C -0.237 4.237 6 C -0.094 4.094 7 C 0.087 3.913 8 H 0.143 0.857 9 C -0.171 4.171 10 C -0.153 4.153 11 C -0.169 4.169 12 C 0.136 3.864 13 H 0.033 0.967 14 C -0.664 4.664 15 H 0.070 0.930 16 C -0.220 4.220 17 N -0.550 5.550 18 Si 0.935 3.065 19 H -0.208 1.208 20 H -0.197 1.197 21 H -0.192 1.192 22 O -0.314 6.314 23 O -0.073 6.073 24 H 0.040 0.960 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.190 0.810 30 H 0.184 0.816 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.426 -5.086 6.510 10.466 hybrid contribution 1.623 -0.273 0.430 1.701 sum 8.049 -5.359 6.940 11.902 Atomic orbital electron populations 1.21749 0.94266 1.03138 1.01151 1.20212 0.96091 0.86247 1.05023 1.23395 1.04402 0.96831 0.84951 1.21769 1.07497 0.94069 0.99965 1.21833 1.08242 1.00523 0.93126 1.23661 1.03549 0.86208 0.96024 1.21127 0.90306 0.93050 0.86839 0.85689 1.22129 0.95609 0.98796 1.00557 1.21598 0.98983 0.97535 0.97158 1.21985 0.96254 1.00428 0.98196 1.20096 0.92777 0.83918 0.89587 0.96720 1.22364 0.95952 1.54745 0.93312 0.92984 1.27352 1.01270 0.91995 1.01430 1.70751 1.38448 1.44728 1.01032 0.83006 0.73241 0.77791 0.72423 1.20774 1.19666 1.19193 1.88302 1.59616 1.39983 1.43516 1.84358 1.64897 1.22836 1.35225 0.95979 0.88964 0.92109 0.90641 0.85690 0.81049 0.81588 0.88772 0.89914 0.93172 0.89691 0.92722 0.92905 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.89 71.98 0.71 -3.43 16 2 C -0.04 -1.07 6.47 29.85 0.19 -0.87 16 3 C -0.05 -1.66 6.57 24.83 0.16 -1.50 16 4 C -0.21 -6.93 10.81 22.19 0.24 -6.69 16 5 C -0.22 -7.59 10.80 22.19 0.24 -7.35 16 6 C -0.04 -1.81 5.44 24.83 0.14 -1.68 16 7 C 0.15 5.94 3.77 29.88 0.11 6.05 16 8 H 0.13 4.49 8.12 -2.38 -0.02 4.47 16 9 C -0.13 -4.44 5.63 30.69 0.17 -4.27 16 10 C -0.12 -4.15 5.71 30.72 0.18 -3.97 16 11 C -0.13 -5.84 5.36 30.69 0.16 -5.68 16 12 C 0.19 10.37 1.77 29.88 0.05 10.42 16 13 H 0.02 0.91 4.86 -2.39 -0.01 0.90 16 14 C -0.63 -37.65 8.79 25.60 0.23 -37.42 16 15 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 16 C -0.02 -1.11 5.40 84.66 0.46 -0.65 16 17 N -0.91 -58.98 13.53 21.45 0.29 -58.69 16 18 Si 1.11 52.20 29.90 68.60 2.05 54.25 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 O -0.39 -21.09 8.91 -148.45 -1.32 -22.41 16 23 O -0.18 -7.77 6.20 -1.95 -0.01 -7.78 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.17 4.69 8.06 -2.91 -0.02 4.67 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.05 1.91 6.39 -2.39 -0.02 1.89 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.27 17.67 6.47 -92.71 -0.60 17.07 16 Total: -1.00 -74.00 297.40 5.26 -68.74 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.21 Total: 22.94 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 3.04 Total: -57.04 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.29 Total: -58.69 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.33 Total: -30.19 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.25 kcal Total: -74.00 5.26 -68.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.826 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds