Wall clock time and date at job start Mon Mar 30 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34516 * 125.78605 * 2 1 4 4 C 1.41379 * 106.83741 * 179.97438 * 3 2 1 5 5 C 1.34516 * 106.84312 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.79085 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.48852 * 89.96908 * 6 5 4 8 8 C 1.53091 * 109.48007 * 209.99759 * 6 5 4 9 9 C 1.53176 * 109.21206 * 62.40622 * 8 6 5 10 10 C 1.53174 * 109.03724 * 56.94941 * 9 8 6 11 11 C 1.53084 * 109.16456 * 303.01556 * 10 9 8 12 12 H 1.08997 * 109.48095 * 297.62758 * 11 10 9 13 13 C 1.50703 * 109.48589 * 177.59257 * 11 10 9 14 14 H 1.08004 * 119.99368 * 359.97438 * 13 11 10 15 15 C 1.37872 * 120.00328 * 180.02562 * 13 11 10 16 16 N 1.31516 * 120.00015 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99695 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47458 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46829 * 120.00359 * 17 15 13 20 20 H 1.48506 * 109.47058 * 239.99597 * 17 15 13 21 21 O 1.42906 * 109.41372 * 57.61236 * 11 10 9 22 22 O 1.34299 * 108.42114 * 0.25891 * 5 4 3 23 23 H 1.09000 * 109.46846 * 90.03135 * 1 2 3 24 24 H 1.08997 * 109.47102 * 210.02537 * 1 2 3 25 25 H 1.08995 * 109.47498 * 330.02760 * 1 2 3 26 26 H 1.07997 * 126.58108 * 359.97438 * 3 2 1 27 27 H 1.08005 * 126.58119 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47135 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47302 * 300.02772 * 7 6 5 30 30 H 1.08994 * 109.47100 * 60.03155 * 7 6 5 31 31 H 1.09002 * 109.52401 * 302.46775 * 8 6 5 32 32 H 1.09004 * 109.52068 * 182.34420 * 8 6 5 33 33 H 1.09004 * 109.53956 * 176.81728 * 9 8 6 34 34 H 1.08997 * 109.54550 * 296.98990 * 9 8 6 35 35 H 1.09007 * 109.52410 * 62.92341 * 10 9 8 36 36 H 1.09003 * 109.52246 * 183.11215 * 10 9 8 37 37 H 0.97003 * 119.99605 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0006 5 6 3.5814 -0.7121 0.0004 6 6 4.7706 -1.6378 0.0003 7 6 5.1738 -1.9510 1.4426 8 6 4.4058 -2.9376 -0.7216 9 6 4.0621 -2.6243 -2.1810 10 6 5.2512 -1.9117 -2.8325 11 6 5.5824 -0.6507 -2.0301 12 1 4.7326 0.0313 -2.0576 13 6 6.7886 0.0246 -2.6302 14 1 7.2713 -0.4026 -3.4968 15 6 7.2766 1.1872 -2.0724 16 7 6.6892 1.7072 -1.0169 17 14 8.7722 2.0238 -2.8160 18 1 9.2438 1.2440 -3.9884 19 1 8.4073 3.3969 -3.2483 20 1 9.8546 2.0954 -1.8018 21 8 5.8620 -1.0095 -0.6754 22 8 2.2925 -1.0894 -0.0061 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.9665 2.1204 -0.0004 27 1 4.5212 1.2434 0.0012 28 1 6.0343 -2.6201 1.4422 29 1 5.4336 -1.0254 1.9564 30 1 4.3409 -2.4306 1.9567 31 1 3.5446 -3.3953 -0.2347 32 1 5.2519 -3.6240 -0.6858 33 1 3.8563 -3.5524 -2.7144 34 1 3.1839 -1.9798 -2.2186 35 1 6.1151 -2.5764 -2.8393 36 1 4.9947 -1.6357 -3.8553 37 1 7.0328 2.5249 -0.6242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309478106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:42 Heat of formation + Delta-G solvation = -45.341257 kcal Electronic energy + Delta-G solvation = -19606.862046 eV Core-core repulsion = 16736.467231 eV Total energy + Delta-G solvation = -2870.394816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.94403 -38.38901 -33.41992 -32.78651 -32.27270 -31.64936 -30.68791 -27.52295 -25.86922 -25.08047 -22.25862 -21.27889 -20.86259 -19.85270 -18.66982 -16.58976 -16.10243 -15.38953 -14.78353 -14.65327 -14.25127 -13.95812 -13.41160 -12.92143 -12.82560 -12.71449 -12.41331 -12.11066 -11.96980 -11.77835 -11.73034 -11.31224 -11.20751 -10.93842 -10.87016 -10.53115 -10.35352 -10.19735 -9.89345 -9.73696 -9.08633 -8.85633 -8.50372 -7.95743 -7.50237 -6.02996 -4.13077 2.39033 3.29812 3.38051 3.41751 3.46339 3.54026 4.41279 4.86859 5.16706 5.36299 5.37703 5.48138 5.61726 5.62827 5.69545 5.75251 5.91510 5.95389 6.00996 6.11958 6.26585 6.31265 6.39731 6.47387 6.60730 6.69005 6.74911 6.84073 6.90036 6.94898 6.96101 7.02572 7.47946 7.59602 7.91486 7.96143 8.29325 8.76737 9.07582 9.56667 11.04717 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.008448 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.285953 B = 3313.689752 C = 3763.966738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.048 4.048 3 C -0.212 4.212 4 C -0.177 4.177 5 C -0.032 4.032 6 C 0.191 3.809 7 C -0.129 4.129 8 C -0.137 4.137 9 C -0.119 4.119 10 C -0.145 4.145 11 C 0.211 3.789 12 H 0.028 0.972 13 C -0.524 4.524 14 H 0.064 0.936 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 O -0.331 6.331 22 O -0.179 6.179 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.179 0.821 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 -4.683 3.049 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.098 4.098 3 C -0.231 4.231 4 C -0.196 4.196 5 C -0.082 4.082 6 C 0.150 3.850 7 C -0.186 4.186 8 C -0.175 4.175 9 C -0.157 4.157 10 C -0.183 4.183 11 C 0.156 3.844 12 H 0.045 0.955 13 C -0.561 4.561 14 H 0.082 0.918 15 C -0.126 4.126 16 N -0.496 5.496 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 O -0.250 6.250 22 O -0.077 6.077 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.197 0.803 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.727 -4.796 3.251 10.475 hybrid contribution 0.546 0.728 -0.547 1.062 sum -8.180 -4.068 2.704 9.528 Atomic orbital electron populations 1.20139 0.86135 1.03062 1.02687 1.22220 0.93478 0.84978 1.09079 1.21617 0.93607 0.98654 1.09242 1.22256 0.98665 0.94613 1.04038 1.23343 0.82258 0.95848 1.06735 1.19636 0.83292 0.88389 0.93715 1.21699 1.00965 1.02219 0.93712 1.22143 1.01049 0.97713 0.96585 1.21599 0.99177 0.99591 0.95299 1.22261 0.96463 0.99906 0.99646 1.19892 0.97362 0.89324 0.77804 0.95457 1.21050 1.14931 1.07203 1.12918 0.91804 1.25016 0.96617 0.96619 0.94349 1.69889 1.39416 1.19694 1.20557 0.86546 0.82971 0.79227 0.79246 1.19729 1.20995 1.20873 1.88463 1.31297 1.77489 1.27706 1.83876 1.16820 1.34745 1.72246 0.90923 0.91328 0.90110 0.84509 0.80339 0.91619 0.91616 0.92413 0.92171 0.91251 0.93174 0.92610 0.92508 0.92552 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.42 36.01 0.38 -0.40 16 2 C -0.05 -0.84 7.32 -35.62 -0.26 -1.10 16 3 C -0.21 -4.09 10.81 -39.70 -0.43 -4.52 16 4 C -0.18 -4.01 8.84 -39.70 -0.35 -4.36 16 5 C -0.03 -0.70 4.08 -35.62 -0.15 -0.84 16 6 C 0.19 4.04 1.06 -91.72 -0.10 3.94 16 7 C -0.13 -2.34 8.83 37.16 0.33 -2.01 16 8 C -0.14 -2.55 4.71 -26.59 -0.13 -2.68 16 9 C -0.12 -2.29 5.78 -26.55 -0.15 -2.44 16 10 C -0.14 -3.19 5.36 -26.60 -0.14 -3.33 16 11 C 0.21 5.45 2.09 -27.84 -0.06 5.39 16 12 H 0.03 0.78 6.05 -51.93 -0.31 0.46 16 13 C -0.52 -14.60 8.79 -34.44 -0.30 -14.90 16 14 H 0.06 1.75 7.74 -52.48 -0.41 1.34 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -24.17 11.55 55.43 0.64 -23.53 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 O -0.33 -8.40 8.98 -35.23 -0.32 -8.72 16 22 O -0.18 -3.54 9.74 5.71 0.06 -3.49 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 27 H 0.18 4.58 6.72 -52.48 -0.35 4.22 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.13 7.01 -51.93 -0.36 0.77 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -29.80 297.93 -7.25 -37.04 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.64 Total: 3.23 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.46 Total: -25.15 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.64 Total: -23.53 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.26 Total: -12.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.80 -7.25 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.296 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds