Wall clock time and date at job start Mon Mar 30 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34510 * 125.78792 * 2 1 4 4 C 1.41381 * 106.83694 * 179.75155 * 3 2 1 5 5 C 1.34512 * 106.84116 * 0.37301 * 4 3 2 6 6 C 1.50707 * 125.78588 * 179.88994 * 5 4 3 7 7 C 1.52997 * 109.48035 * 89.69602 * 6 5 4 8 8 C 1.53095 * 109.47408 * 209.71539 * 6 5 4 9 9 C 1.53181 * 109.15940 * 177.59540 * 8 6 5 10 10 C 1.53176 * 109.03560 * 303.01673 * 9 8 6 11 11 C 1.53095 * 109.16286 * 56.98068 * 10 9 8 12 12 H 1.08995 * 109.48092 * 62.37615 * 11 10 9 13 13 C 1.50697 * 109.48100 * 182.40954 * 11 10 9 14 14 H 1.08003 * 120.00206 * 359.97438 * 13 11 10 15 15 C 1.37880 * 120.00238 * 180.02562 * 13 11 10 16 16 N 1.31512 * 119.99621 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00116 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47103 * 60.00334 * 17 15 13 19 19 H 1.48501 * 109.47029 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47494 * 300.00295 * 17 15 13 21 21 O 1.42895 * 109.48222 * 329.65586 * 6 5 4 22 22 O 1.34298 * 108.42161 * 359.62603 * 5 4 3 23 23 H 1.09001 * 109.46670 * 270.02301 * 1 2 3 24 24 H 1.08999 * 109.47034 * 30.02244 * 1 2 3 25 25 H 1.08999 * 109.47155 * 150.02782 * 1 2 3 26 26 H 1.07996 * 126.58218 * 359.95874 * 3 2 1 27 27 H 1.08004 * 126.57888 * 180.23226 * 4 3 2 28 28 H 1.09000 * 109.46837 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46917 * 300.01841 * 7 6 5 30 30 H 1.09004 * 109.47544 * 60.01742 * 7 6 5 31 31 H 1.08994 * 109.52897 * 57.69059 * 8 6 5 32 32 H 1.09002 * 109.52549 * 297.49220 * 8 6 5 33 33 H 1.08996 * 109.54405 * 183.15389 * 9 8 6 34 34 H 1.08999 * 109.54619 * 62.88414 * 9 8 6 35 35 H 1.09001 * 109.52789 * 176.89009 * 10 9 8 36 36 H 1.09007 * 109.52321 * 297.07724 * 10 9 8 37 37 H 0.97000 * 119.99713 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0059 5 6 3.5814 -0.7122 0.0007 6 6 4.7706 -1.6379 0.0017 7 6 5.1726 -1.9505 1.4444 8 6 4.4061 -2.9379 -0.7199 9 6 5.6369 -3.8486 -0.7675 10 6 6.7838 -3.1030 -1.4567 11 6 7.0563 -1.7965 -0.7067 12 1 7.3729 -2.0213 0.3117 13 6 8.1437 -1.0289 -1.4133 14 1 8.5958 -1.4321 -2.3074 15 6 8.5623 0.1878 -0.9177 16 7 8.0129 0.6781 0.1719 17 14 9.9107 1.1389 -1.7932 18 1 9.4791 1.4461 -3.1805 19 1 10.1757 2.4057 -1.0648 20 1 11.1496 0.3211 -1.8299 21 8 5.8633 -1.0106 -0.6725 22 8 2.2924 -1.0894 0.0004 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.9666 2.1204 -0.0006 27 1 4.5212 1.2433 0.0110 28 1 6.0331 -2.6197 1.4449 29 1 5.4321 -1.0248 1.9580 30 1 4.3392 -2.4298 1.9582 31 1 4.0807 -2.7121 -1.7353 32 1 3.6021 -3.4402 -0.1819 33 1 5.4002 -4.7525 -1.3288 34 1 5.9329 -4.1150 0.2472 35 1 7.6801 -3.7232 -1.4458 36 1 6.5063 -2.8804 -2.4871 37 1 8.3077 1.5338 0.5208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309478107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:45 Heat of formation + Delta-G solvation = -42.765755 kcal Electronic energy + Delta-G solvation = -19194.037764 eV Core-core repulsion = 16323.754631 eV Total energy + Delta-G solvation = -2870.283133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09263 -38.64575 -33.37769 -32.85271 -32.47853 -31.74270 -30.44453 -27.65134 -26.05873 -25.14951 -22.53408 -21.64330 -20.96368 -19.63423 -18.26410 -16.90892 -16.05898 -15.72506 -14.88639 -14.69027 -14.26988 -14.11524 -13.59414 -13.05233 -12.93589 -12.73234 -12.61122 -12.29382 -12.11949 -11.85287 -11.62007 -11.53422 -11.14409 -10.91806 -10.85772 -10.56474 -10.37590 -10.17741 -9.85862 -9.69507 -9.31243 -8.87256 -8.50098 -7.99199 -7.64780 -6.02979 -4.14931 2.19810 3.18816 3.25146 3.33669 3.36817 3.39514 4.40957 4.88639 5.10973 5.23203 5.39154 5.47929 5.50907 5.54889 5.57261 5.78199 5.78439 5.85747 5.95054 5.99012 6.22167 6.28684 6.34380 6.44986 6.50113 6.61384 6.66863 6.69011 6.84625 6.88220 6.90641 6.96123 7.17692 7.51461 7.74377 7.88416 8.25874 8.74809 9.07880 9.54895 11.04089 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.007494 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.649370 B = 3735.544099 C = 4517.320353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.041 4.041 3 C -0.211 4.211 4 C -0.182 4.182 5 C 0.011 3.989 6 C 0.194 3.806 7 C -0.164 4.164 8 C -0.137 4.137 9 C -0.121 4.121 10 C -0.147 4.147 11 C 0.219 3.781 12 H 0.023 0.977 13 C -0.526 4.526 14 H 0.064 0.936 15 C 0.080 3.920 16 N -0.857 5.857 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.339 6.339 22 O -0.176 6.176 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -3.403 1.359 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 C -0.230 4.230 4 C -0.201 4.201 5 C -0.039 4.039 6 C 0.153 3.847 7 C -0.221 4.221 8 C -0.175 4.175 9 C -0.158 4.158 10 C -0.184 4.184 11 C 0.164 3.836 12 H 0.040 0.960 13 C -0.563 4.563 14 H 0.082 0.918 15 C -0.127 4.127 16 N -0.492 5.492 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.259 6.259 22 O -0.074 6.074 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.944 -3.368 1.412 11.537 hybrid contribution 0.731 0.633 -0.385 1.041 sum -10.213 -2.735 1.027 10.622 Atomic orbital electron populations 1.20174 0.85744 1.03410 1.02821 1.22246 0.93588 0.84650 1.08614 1.21587 0.93249 0.98868 1.09280 1.21677 0.97707 0.94383 1.06327 1.22138 0.81866 0.94717 1.05149 1.19219 0.84725 0.87964 0.92816 1.22329 1.01049 1.02819 0.95890 1.22113 0.97912 0.96388 1.01079 1.21668 0.95891 0.97581 1.00704 1.22293 0.96611 0.99196 1.00344 1.19812 0.82095 0.86646 0.95010 0.95964 1.20968 1.16636 1.05968 1.12750 0.91782 1.25057 0.95887 0.97239 0.94513 1.70019 1.40383 1.18495 1.20329 0.86684 0.82157 0.79264 0.80015 1.20092 1.21186 1.20114 1.88410 1.18970 1.43806 1.74680 1.83862 1.16400 1.34863 1.72231 0.90758 0.89873 0.91071 0.84140 0.82675 0.91095 0.91295 0.93371 0.91732 0.92163 0.92942 0.92193 0.92268 0.92459 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 36.01 0.38 -0.32 16 2 C -0.04 -0.67 7.32 -35.62 -0.26 -0.93 16 3 C -0.21 -3.65 10.81 -39.70 -0.43 -4.08 16 4 C -0.18 -3.81 10.36 -39.70 -0.41 -4.22 16 5 C 0.01 0.23 5.89 -35.62 -0.21 0.02 16 6 C 0.19 4.13 1.04 -91.72 -0.10 4.04 16 7 C -0.16 -3.25 7.92 37.16 0.29 -2.95 16 8 C -0.14 -2.57 4.66 -26.59 -0.12 -2.70 16 9 C -0.12 -2.17 5.72 -26.55 -0.15 -2.32 16 10 C -0.15 -3.09 5.36 -26.59 -0.14 -3.23 16 11 C 0.22 5.54 2.17 -27.84 -0.06 5.48 16 12 H 0.02 0.60 6.34 -51.93 -0.33 0.27 16 13 C -0.53 -14.57 8.79 -34.44 -0.30 -14.87 16 14 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 15 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -24.57 12.84 55.43 0.71 -23.86 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 O -0.34 -8.68 8.88 -35.23 -0.31 -8.99 16 22 O -0.18 -3.32 10.31 5.73 0.06 -3.26 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.16 3.55 8.06 -52.48 -0.42 3.12 16 28 H 0.07 1.39 4.98 -51.93 -0.26 1.13 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.02 6.62 -51.93 -0.34 0.68 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 300.27 15.07 4.52 4.52 Total: -1.00 -30.05 300.27 -7.20 -37.25 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.55 Total: 2.16 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.62 Total: -23.97 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.71 Total: -23.86 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.25 Total: -12.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.05 -7.20 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.518 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds