Wall clock time and date at job start Mon Mar 30 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34510 * 125.78792 * 2 1 4 4 C 1.41381 * 106.83694 * 179.75155 * 3 2 1 5 5 C 1.34512 * 106.84116 * 0.37301 * 4 3 2 6 6 C 1.50707 * 125.78588 * 179.88994 * 5 4 3 7 7 C 1.52997 * 109.48035 * 89.69602 * 6 5 4 8 8 C 1.53095 * 109.47408 * 209.71539 * 6 5 4 9 9 C 1.53181 * 109.15940 * 177.59540 * 8 6 5 10 10 C 1.53176 * 109.03560 * 303.01673 * 9 8 6 11 11 C 1.53095 * 109.16286 * 56.98068 * 10 9 8 12 12 H 1.08995 * 109.48092 * 62.37615 * 11 10 9 13 13 C 1.50697 * 109.48100 * 182.40954 * 11 10 9 14 14 H 1.08003 * 120.00206 * 359.97438 * 13 11 10 15 15 C 1.37880 * 120.00238 * 180.02562 * 13 11 10 16 16 N 1.31512 * 119.99621 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00116 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47103 * 60.00334 * 17 15 13 19 19 H 1.48501 * 109.47029 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47494 * 300.00295 * 17 15 13 21 21 O 1.42895 * 109.48222 * 329.65586 * 6 5 4 22 22 O 1.34298 * 108.42161 * 359.62603 * 5 4 3 23 23 H 1.09001 * 109.46670 * 270.02301 * 1 2 3 24 24 H 1.08999 * 109.47034 * 30.02244 * 1 2 3 25 25 H 1.08999 * 109.47155 * 150.02782 * 1 2 3 26 26 H 1.07996 * 126.58218 * 359.95874 * 3 2 1 27 27 H 1.08004 * 126.57888 * 180.23226 * 4 3 2 28 28 H 1.09000 * 109.46837 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46917 * 300.01841 * 7 6 5 30 30 H 1.09004 * 109.47544 * 60.01742 * 7 6 5 31 31 H 1.08994 * 109.52897 * 57.69059 * 8 6 5 32 32 H 1.09002 * 109.52549 * 297.49220 * 8 6 5 33 33 H 1.08996 * 109.54405 * 183.15389 * 9 8 6 34 34 H 1.08999 * 109.54619 * 62.88414 * 9 8 6 35 35 H 1.09001 * 109.52789 * 176.89009 * 10 9 8 36 36 H 1.09007 * 109.52321 * 297.07724 * 10 9 8 37 37 H 0.97000 * 119.99713 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0059 5 6 3.5814 -0.7122 0.0007 6 6 4.7706 -1.6379 0.0017 7 6 5.1726 -1.9505 1.4444 8 6 4.4061 -2.9379 -0.7199 9 6 5.6369 -3.8486 -0.7675 10 6 6.7838 -3.1030 -1.4567 11 6 7.0563 -1.7965 -0.7067 12 1 7.3729 -2.0213 0.3117 13 6 8.1437 -1.0289 -1.4133 14 1 8.5958 -1.4321 -2.3074 15 6 8.5623 0.1878 -0.9177 16 7 8.0129 0.6781 0.1719 17 14 9.9107 1.1389 -1.7932 18 1 9.4791 1.4461 -3.1805 19 1 10.1757 2.4057 -1.0648 20 1 11.1496 0.3211 -1.8299 21 8 5.8633 -1.0106 -0.6725 22 8 2.2924 -1.0894 0.0004 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.9666 2.1204 -0.0006 27 1 4.5212 1.2433 0.0110 28 1 6.0331 -2.6197 1.4449 29 1 5.4321 -1.0248 1.9580 30 1 4.3392 -2.4298 1.9582 31 1 4.0807 -2.7121 -1.7353 32 1 3.6021 -3.4402 -0.1819 33 1 5.4002 -4.7525 -1.3288 34 1 5.9329 -4.1150 0.2472 35 1 7.6801 -3.7232 -1.4458 36 1 6.5063 -2.8804 -2.4871 37 1 8.3077 1.5338 0.5208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309478107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:45 Heat of formation + Delta-G solvation = -60.011840 kcal Electronic energy + Delta-G solvation = -19194.785611 eV Core-core repulsion = 16323.754631 eV Total energy + Delta-G solvation = -2871.030980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.54233 -40.36091 -35.26856 -34.41740 -33.92426 -33.54963 -31.83782 -29.42018 -27.51283 -26.86833 -24.20105 -23.33170 -22.44653 -21.12132 -19.90916 -18.80887 -17.78468 -17.18988 -16.62569 -16.52128 -15.87192 -15.65083 -15.20137 -14.54161 -14.43067 -13.96737 -13.90869 -13.74569 -13.68382 -13.38538 -13.22448 -12.95819 -12.78894 -12.75007 -12.55630 -12.37322 -12.08848 -11.78735 -11.72143 -11.38132 -10.88666 -10.76122 -10.49431 -9.77705 -9.12814 -8.13555 -6.33236 0.78311 1.40625 1.43001 1.50416 1.70429 1.82014 2.40995 3.07728 3.59680 3.70806 3.95506 3.98892 4.11381 4.19115 4.25443 4.38480 4.41065 4.60745 4.66253 4.72364 4.76868 4.81645 4.88759 4.93227 4.97982 5.07727 5.11490 5.18248 5.23096 5.28088 5.32222 5.37867 5.58588 5.68454 5.81066 6.22284 6.26695 6.68054 7.18319 7.41728 8.92959 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.007494 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.649370 B = 3735.544099 C = 4517.320353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.023 4.023 3 C -0.226 4.226 4 C -0.207 4.207 5 C -0.011 4.011 6 C 0.182 3.818 7 C -0.154 4.154 8 C -0.130 4.130 9 C -0.114 4.114 10 C -0.141 4.141 11 C 0.217 3.783 12 H -0.001 1.001 13 C -0.553 4.553 14 H 0.064 0.936 15 C 0.029 3.971 16 N -0.889 5.889 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.263 1.263 21 O -0.372 6.372 22 O -0.177 6.177 23 H 0.097 0.903 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -4.411 0.981 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.245 4.245 4 C -0.227 4.227 5 C -0.060 4.060 6 C 0.142 3.858 7 C -0.211 4.211 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.179 4.179 11 C 0.162 3.838 12 H 0.017 0.983 13 C -0.590 4.590 14 H 0.082 0.918 15 C -0.175 4.175 16 N -0.525 5.525 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.188 1.188 21 O -0.292 6.292 22 O -0.075 6.075 23 H 0.115 0.885 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.185 0.815 27 H 0.139 0.861 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.900 -4.390 1.030 13.666 hybrid contribution 1.232 0.977 -0.244 1.591 sum -11.668 -3.414 0.786 12.182 Atomic orbital electron populations 1.20483 0.81251 1.05382 1.04874 1.23325 0.95732 0.83349 1.04902 1.21831 0.91518 1.00823 1.10357 1.21631 0.98490 0.94809 1.07737 1.21995 0.82782 0.94496 1.06774 1.19457 0.83858 0.89204 0.93291 1.22230 1.02020 1.01543 0.95330 1.22058 0.99035 0.95178 1.00469 1.21646 0.93994 0.98055 1.01400 1.22169 0.98589 0.97641 0.99498 1.19678 0.81952 0.88195 0.94006 0.98341 1.21412 1.18046 1.06652 1.12877 0.91818 1.25873 0.98159 0.98236 0.95191 1.70159 1.41850 1.18758 1.21777 0.85653 0.79653 0.77935 0.78604 1.19976 1.20855 1.18778 1.88289 1.20046 1.45287 1.75577 1.83863 1.15515 1.35841 1.72287 0.88471 0.87391 0.89604 0.81530 0.86133 0.91269 0.94146 0.90446 0.92620 0.89552 0.89520 0.91237 0.91313 0.93348 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.42 71.24 0.74 -0.35 16 2 C -0.02 -0.70 7.32 24.83 0.18 -0.52 16 3 C -0.23 -7.67 10.81 22.19 0.24 -7.43 16 4 C -0.21 -9.03 10.36 22.19 0.23 -8.80 16 5 C -0.01 -0.46 5.89 24.83 0.15 -0.31 16 6 C 0.18 7.88 1.04 -11.51 -0.01 7.87 16 7 C -0.15 -6.20 7.92 71.98 0.57 -5.63 16 8 C -0.13 -4.68 4.66 30.69 0.14 -4.53 16 9 C -0.11 -3.84 5.72 30.71 0.18 -3.66 16 10 C -0.14 -5.92 5.36 30.69 0.16 -5.76 16 11 C 0.22 11.31 2.17 29.88 0.06 11.37 16 12 H 0.00 -0.05 6.34 -2.39 -0.02 -0.07 16 13 C -0.55 -31.56 8.79 25.60 0.23 -31.33 16 14 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 15 C 0.03 1.64 5.40 84.66 0.46 2.10 16 16 N -0.89 -53.28 12.84 21.45 0.28 -53.00 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 O -0.37 -19.83 8.88 -148.98 -1.32 -21.16 16 22 O -0.18 -6.41 10.31 -2.42 -0.02 -6.44 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.17 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.12 6.01 8.06 -2.91 -0.02 5.99 16 28 H 0.07 2.76 4.98 -2.39 -0.01 2.75 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 2.23 6.62 -2.39 -0.02 2.21 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -68.28 300.27 5.32 -62.96 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.04 Total: 18.14 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.33 Total: -46.99 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.28 Total: -53.00 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.35 Total: -27.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.28 5.32 -62.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.947 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds