Wall clock time and date at job start Mon Mar 30 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 125.78743 * 2 1 4 4 C 1.41387 * 106.84017 * 179.89319 * 3 2 1 5 5 C 1.34517 * 106.83948 * 0.36610 * 4 3 2 6 6 C 1.50699 * 125.79276 * 179.74710 * 5 4 3 7 7 C 1.52995 * 109.48667 * 269.98514 * 6 5 4 8 8 C 1.53092 * 109.48079 * 149.94720 * 6 5 4 9 9 C 1.53177 * 109.16473 * 182.41389 * 8 6 5 10 10 C 1.53178 * 109.03538 * 56.97888 * 9 8 6 11 11 C 1.53080 * 109.16721 * 303.02251 * 10 9 8 12 12 H 1.09004 * 109.49407 * 297.62056 * 11 10 9 13 13 C 1.50701 * 109.48343 * 177.58986 * 11 10 9 14 14 H 1.08000 * 119.99941 * 0.05809 * 13 11 10 15 15 C 1.37874 * 120.00026 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00511 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99972 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47296 * 89.99839 * 17 15 13 19 19 H 1.48503 * 109.47140 * 209.99984 * 17 15 13 20 20 H 1.48501 * 109.46749 * 329.99673 * 17 15 13 21 21 O 1.42904 * 109.47615 * 30.01127 * 6 5 4 22 22 O 1.34298 * 125.78885 * 180.30929 * 2 1 3 23 23 H 1.09002 * 109.47152 * 269.69037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69118 * 1 2 3 26 26 H 1.07998 * 126.58674 * 0.02562 * 3 2 1 27 27 H 1.07993 * 126.58258 * 180.16936 * 4 3 2 28 28 H 1.09006 * 109.46897 * 59.99936 * 7 6 5 29 29 H 1.08993 * 109.47172 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47005 * 299.99806 * 7 6 5 31 31 H 1.09000 * 109.52228 * 302.31800 * 8 6 5 32 32 H 1.08999 * 109.52030 * 62.50709 * 8 6 5 33 33 H 1.09003 * 109.54241 * 297.11848 * 9 8 6 34 34 H 1.09001 * 109.54525 * 176.84823 * 9 8 6 35 35 H 1.09006 * 109.52085 * 183.11191 * 10 9 8 36 36 H 1.09005 * 109.52076 * 62.93023 * 10 9 8 37 37 H 0.96998 * 120.00195 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0025 5 6 3.5814 -0.7122 -0.0043 6 6 4.7706 -1.6379 -0.0100 7 6 5.1719 -1.9443 -1.4543 8 6 4.4066 -2.9410 0.7064 9 6 5.6374 -3.8518 0.7495 10 6 6.7847 -3.1090 1.4410 11 6 7.0568 -1.7995 0.6964 12 1 7.3728 -2.0198 -0.3234 13 6 8.1447 -1.0347 1.4054 14 1 8.5977 -1.4419 2.2973 15 6 8.5621 0.1844 0.9152 16 7 8.0114 0.6798 -0.1715 17 14 9.9111 1.1321 1.7937 18 1 11.2325 0.7378 1.2425 19 1 9.7050 2.5887 1.5915 20 1 9.8681 0.8229 3.2455 21 8 5.8637 -1.0134 0.6661 22 8 2.2924 -1.0894 -0.0059 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 1.9666 2.1204 0.0004 27 1 4.5212 1.2433 0.0058 28 1 5.4315 -1.0163 -1.9639 29 1 6.0322 -2.6135 -1.4581 30 1 4.3381 -2.4210 -1.9697 31 1 4.0819 -2.7193 1.7230 32 1 3.6022 -3.4408 0.1669 33 1 5.9328 -4.1139 -0.2665 34 1 5.4011 -4.7580 1.3072 35 1 7.6811 -3.7292 1.4269 36 1 6.5079 -2.8907 2.4725 37 1 8.3054 1.5373 -0.5166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309478108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:48 Heat of formation + Delta-G solvation = -42.815559 kcal Electronic energy + Delta-G solvation = -19194.320285 eV Core-core repulsion = 16324.034992 eV Total energy + Delta-G solvation = -2870.285293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09154 -38.64590 -33.37823 -32.85234 -32.47843 -31.74200 -30.44525 -27.65202 -26.06000 -25.15038 -22.53441 -21.64364 -20.96411 -19.63364 -18.26425 -16.91024 -16.06118 -15.72326 -14.88816 -14.68982 -14.26613 -14.11201 -13.60502 -13.04095 -12.90788 -12.77568 -12.61242 -12.29061 -12.11683 -11.85064 -11.62180 -11.53607 -11.14274 -10.94364 -10.84057 -10.56804 -10.35609 -10.17790 -9.86154 -9.68962 -9.31231 -8.87911 -8.49950 -7.99271 -7.64761 -6.03154 -4.15029 2.19859 3.17575 3.25836 3.32163 3.37420 3.40897 4.40825 4.88663 5.10883 5.22997 5.39091 5.47903 5.51367 5.54581 5.57317 5.78075 5.78420 5.85835 5.95018 5.99011 6.22177 6.28644 6.34361 6.45000 6.50091 6.61382 6.66857 6.69067 6.84629 6.88160 6.90629 6.96136 7.17760 7.51505 7.74376 7.88382 8.25755 8.74904 9.07849 9.54895 11.03896 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.007495 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.651367 B = 3735.040645 C = 4517.184437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.041 4.041 3 C -0.211 4.211 4 C -0.182 4.182 5 C 0.011 3.989 6 C 0.194 3.806 7 C -0.164 4.164 8 C -0.137 4.137 9 C -0.121 4.121 10 C -0.146 4.146 11 C 0.219 3.781 12 H 0.023 0.977 13 C -0.525 4.525 14 H 0.065 0.935 15 C 0.079 3.921 16 N -0.856 5.856 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.339 6.339 22 O -0.176 6.176 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -3.411 -1.381 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 C -0.230 4.230 4 C -0.201 4.201 5 C -0.039 4.039 6 C 0.153 3.847 7 C -0.221 4.221 8 C -0.175 4.175 9 C -0.158 4.158 10 C -0.184 4.184 11 C 0.164 3.836 12 H 0.040 0.960 13 C -0.563 4.563 14 H 0.083 0.917 15 C -0.127 4.127 16 N -0.492 5.492 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.259 6.259 22 O -0.074 6.074 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.951 -3.377 -1.429 11.549 hybrid contribution 0.735 0.635 0.383 1.044 sum -10.216 -2.741 -1.046 10.629 Atomic orbital electron populations 1.20175 0.85744 1.03345 1.02888 1.22244 0.93588 0.84651 1.08600 1.21589 0.93250 0.98867 1.09292 1.21678 0.97708 0.94385 1.06305 1.22139 0.81861 0.94710 1.05170 1.19219 0.84723 0.87976 0.92810 1.22327 1.01045 1.02843 0.95868 1.22112 0.97913 0.96371 1.01095 1.21669 0.95889 0.97582 1.00704 1.22290 0.96608 0.99204 1.00334 1.19817 0.82111 0.86618 0.95053 0.95967 1.21004 1.16545 1.05764 1.12939 0.91732 1.25059 0.95881 0.97243 0.94531 1.70029 1.40287 1.18283 1.20617 0.86625 0.81980 0.79224 0.80314 1.20549 1.21097 1.19759 1.88412 1.18938 1.43990 1.74523 1.83863 1.16401 1.34863 1.72235 0.90700 0.91090 0.89907 0.84141 0.82671 0.91293 0.91097 0.93369 0.91734 0.92162 0.92194 0.92940 0.92269 0.92456 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 36.01 0.38 -0.32 16 2 C -0.04 -0.67 7.32 -35.62 -0.26 -0.93 16 3 C -0.21 -3.65 10.81 -39.70 -0.43 -4.08 16 4 C -0.18 -3.81 10.36 -39.70 -0.41 -4.22 16 5 C 0.01 0.23 5.89 -35.62 -0.21 0.02 16 6 C 0.19 4.13 1.04 -91.73 -0.10 4.04 16 7 C -0.16 -3.24 7.92 37.15 0.29 -2.95 16 8 C -0.14 -2.57 4.66 -26.59 -0.12 -2.70 16 9 C -0.12 -2.17 5.72 -26.55 -0.15 -2.32 16 10 C -0.15 -3.09 5.36 -26.60 -0.14 -3.23 16 11 C 0.22 5.53 2.17 -27.84 -0.06 5.47 16 12 H 0.02 0.60 6.34 -51.93 -0.33 0.27 16 13 C -0.53 -14.55 8.79 -34.44 -0.30 -14.85 16 14 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -24.56 12.84 55.43 0.71 -23.85 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 O -0.34 -8.68 8.88 -35.23 -0.31 -8.99 16 22 O -0.18 -3.32 10.31 5.71 0.06 -3.26 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.16 3.55 8.06 -52.49 -0.42 3.13 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.39 4.98 -51.93 -0.26 1.13 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.02 6.62 -51.93 -0.34 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -30.06 300.26 -7.20 -37.26 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.55 Total: 2.13 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.62 Total: -23.96 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.71 Total: -23.85 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.25 Total: -12.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.06 -7.20 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.553 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds