Wall clock time and date at job start Mon Mar 30 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 125.78743 * 2 1 4 4 C 1.41387 * 106.84017 * 179.89319 * 3 2 1 5 5 C 1.34517 * 106.83948 * 0.36610 * 4 3 2 6 6 C 1.50699 * 125.79276 * 179.74710 * 5 4 3 7 7 C 1.52995 * 109.48667 * 269.98514 * 6 5 4 8 8 C 1.53092 * 109.48079 * 149.94720 * 6 5 4 9 9 C 1.53177 * 109.16473 * 182.41389 * 8 6 5 10 10 C 1.53178 * 109.03538 * 56.97888 * 9 8 6 11 11 C 1.53080 * 109.16721 * 303.02251 * 10 9 8 12 12 H 1.09004 * 109.49407 * 297.62056 * 11 10 9 13 13 C 1.50701 * 109.48343 * 177.58986 * 11 10 9 14 14 H 1.08000 * 119.99941 * 0.05809 * 13 11 10 15 15 C 1.37874 * 120.00026 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00511 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99972 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47296 * 89.99839 * 17 15 13 19 19 H 1.48503 * 109.47140 * 209.99984 * 17 15 13 20 20 H 1.48501 * 109.46749 * 329.99673 * 17 15 13 21 21 O 1.42904 * 109.47615 * 30.01127 * 6 5 4 22 22 O 1.34298 * 125.78885 * 180.30929 * 2 1 3 23 23 H 1.09002 * 109.47152 * 269.69037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69118 * 1 2 3 26 26 H 1.07998 * 126.58674 * 0.02562 * 3 2 1 27 27 H 1.07993 * 126.58258 * 180.16936 * 4 3 2 28 28 H 1.09006 * 109.46897 * 59.99936 * 7 6 5 29 29 H 1.08993 * 109.47172 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47005 * 299.99806 * 7 6 5 31 31 H 1.09000 * 109.52228 * 302.31800 * 8 6 5 32 32 H 1.08999 * 109.52030 * 62.50709 * 8 6 5 33 33 H 1.09003 * 109.54241 * 297.11848 * 9 8 6 34 34 H 1.09001 * 109.54525 * 176.84823 * 9 8 6 35 35 H 1.09006 * 109.52085 * 183.11191 * 10 9 8 36 36 H 1.09005 * 109.52076 * 62.93023 * 10 9 8 37 37 H 0.96998 * 120.00195 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0025 5 6 3.5814 -0.7122 -0.0043 6 6 4.7706 -1.6379 -0.0100 7 6 5.1719 -1.9443 -1.4543 8 6 4.4066 -2.9410 0.7064 9 6 5.6374 -3.8518 0.7495 10 6 6.7847 -3.1090 1.4410 11 6 7.0568 -1.7995 0.6964 12 1 7.3728 -2.0198 -0.3234 13 6 8.1447 -1.0347 1.4054 14 1 8.5977 -1.4419 2.2973 15 6 8.5621 0.1844 0.9152 16 7 8.0114 0.6798 -0.1715 17 14 9.9111 1.1321 1.7937 18 1 11.2325 0.7378 1.2425 19 1 9.7050 2.5887 1.5915 20 1 9.8681 0.8229 3.2455 21 8 5.8637 -1.0134 0.6661 22 8 2.2924 -1.0894 -0.0059 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 1.9666 2.1204 0.0004 27 1 4.5212 1.2433 0.0058 28 1 5.4315 -1.0163 -1.9639 29 1 6.0322 -2.6135 -1.4581 30 1 4.3381 -2.4210 -1.9697 31 1 4.0819 -2.7193 1.7230 32 1 3.6022 -3.4408 0.1669 33 1 5.9328 -4.1139 -0.2665 34 1 5.4011 -4.7580 1.3072 35 1 7.6811 -3.7292 1.4269 36 1 6.5079 -2.8907 2.4725 37 1 8.3054 1.5373 -0.5166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309478108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:47 Heat of formation + Delta-G solvation = -60.073935 kcal Electronic energy + Delta-G solvation = -19195.068664 eV Core-core repulsion = 16324.034992 eV Total energy + Delta-G solvation = -2871.033673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.54128 -40.36084 -35.26929 -34.41710 -33.92393 -33.54897 -31.83847 -29.42095 -27.51440 -26.86911 -24.20146 -23.33162 -22.44711 -21.12089 -19.90910 -18.81119 -17.78687 -17.18832 -16.62726 -16.51911 -15.87033 -15.64785 -15.20757 -14.55176 -14.41723 -13.98072 -13.90927 -13.73985 -13.68771 -13.38026 -13.22491 -12.96058 -12.81197 -12.73569 -12.54472 -12.38062 -12.07414 -11.79135 -11.72156 -11.37765 -10.89481 -10.76466 -10.48845 -9.77805 -9.12835 -8.13737 -6.33353 0.78315 1.39876 1.41789 1.52026 1.69813 1.82574 2.40792 3.07662 3.59640 3.70717 3.95493 3.98910 4.11411 4.19093 4.25479 4.38495 4.41080 4.60846 4.66347 4.72417 4.76656 4.81563 4.88766 4.93259 4.97986 5.07730 5.11473 5.18270 5.23070 5.28109 5.32245 5.37879 5.58673 5.68451 5.81066 6.22191 6.26667 6.68145 7.18248 7.41697 8.92898 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.007495 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.651367 B = 3735.040645 C = 4517.184437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.023 4.023 3 C -0.227 4.227 4 C -0.207 4.207 5 C -0.011 4.011 6 C 0.182 3.818 7 C -0.154 4.154 8 C -0.130 4.130 9 C -0.114 4.114 10 C -0.141 4.141 11 C 0.217 3.783 12 H -0.001 1.001 13 C -0.552 4.552 14 H 0.063 0.937 15 C 0.029 3.971 16 N -0.889 5.889 17 Si 0.957 3.043 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.268 1.268 21 O -0.371 6.371 22 O -0.177 6.177 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.167 0.833 27 H 0.120 0.880 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 -4.417 -1.008 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.245 4.245 4 C -0.227 4.227 5 C -0.060 4.060 6 C 0.142 3.858 7 C -0.211 4.211 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.179 4.179 11 C 0.161 3.839 12 H 0.017 0.983 13 C -0.589 4.589 14 H 0.082 0.918 15 C -0.175 4.175 16 N -0.525 5.525 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.193 1.193 21 O -0.292 6.292 22 O -0.075 6.075 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.185 0.815 27 H 0.139 0.861 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.914 -4.397 -1.053 13.683 hybrid contribution 1.240 0.979 0.248 1.599 sum -11.674 -3.418 -0.805 12.190 Atomic orbital electron populations 1.20483 0.81251 1.05476 1.04782 1.23323 0.95731 0.83348 1.04894 1.21833 0.91517 1.00823 1.10360 1.21631 0.98488 0.94812 1.07729 1.21996 0.82779 0.94484 1.06783 1.19457 0.83854 0.89225 0.93277 1.22228 1.02019 1.01558 0.95315 1.22057 0.99038 0.95151 1.00492 1.21647 0.93988 0.98068 1.01391 1.22167 0.98593 0.97640 0.99494 1.19682 0.81965 0.88177 0.94031 0.98339 1.21434 1.17958 1.06449 1.13049 0.91838 1.25872 0.98151 0.98229 0.95218 1.70166 1.41764 1.18565 1.22055 0.85594 0.79454 0.77549 0.79218 1.19317 1.21074 1.19294 1.88290 1.20013 1.45464 1.75423 1.83864 1.15514 1.35841 1.72288 0.88707 0.89462 0.87293 0.81533 0.86145 0.94147 0.91269 0.90441 0.92624 0.89549 0.91233 0.89519 0.91307 0.93360 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.42 71.24 0.74 -0.35 16 2 C -0.02 -0.70 7.32 24.83 0.18 -0.52 16 3 C -0.23 -7.67 10.81 22.19 0.24 -7.43 16 4 C -0.21 -9.03 10.36 22.19 0.23 -8.80 16 5 C -0.01 -0.45 5.89 24.83 0.15 -0.31 16 6 C 0.18 7.88 1.04 -11.51 -0.01 7.87 16 7 C -0.15 -6.20 7.92 71.98 0.57 -5.63 16 8 C -0.13 -4.68 4.66 30.68 0.14 -4.53 16 9 C -0.11 -3.84 5.72 30.71 0.18 -3.66 16 10 C -0.14 -5.92 5.36 30.68 0.16 -5.76 16 11 C 0.22 11.29 2.17 29.88 0.06 11.36 16 12 H 0.00 -0.05 6.34 -2.39 -0.02 -0.07 16 13 C -0.55 -31.50 8.79 25.60 0.23 -31.28 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.03 1.63 5.40 84.65 0.46 2.09 16 16 N -0.89 -53.26 12.84 21.45 0.28 -52.98 16 17 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 O -0.37 -19.82 8.88 -148.98 -1.32 -21.14 16 22 O -0.18 -6.41 10.31 -2.48 -0.03 -6.43 16 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.17 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.12 6.01 8.06 -2.91 -0.02 5.99 16 28 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 2.76 4.98 -2.39 -0.01 2.75 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.23 6.62 -2.39 -0.02 2.21 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.31 300.26 5.33 -62.98 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.04 Total: 18.01 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 3.33 Total: -46.95 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.28 Total: -52.98 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.35 Total: -27.58 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.31 5.33 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309478108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.908 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds