Wall clock time and date at job start Mon Mar 30 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 C 1.50701 * 109.89235 * 59.47934 * 3 2 1 5 5 C 1.34512 * 125.79049 * 270.23307 * 4 3 2 6 6 C 1.41389 * 106.83654 * 179.89595 * 5 4 3 7 7 C 1.34512 * 106.84402 * 0.37329 * 6 5 4 8 8 O 1.34300 * 125.78479 * 90.55233 * 4 3 2 9 9 C 1.54380 * 109.82994 * 180.41552 * 3 2 1 10 10 C 1.55417 * 102.30997 * 140.79842 * 9 3 2 11 11 C 1.54949 * 100.88926 * 325.98886 * 10 9 3 12 12 C 1.52994 * 110.31024 * 277.35363 * 11 10 9 13 13 C 1.50700 * 110.30342 * 155.28746 * 11 10 9 14 14 H 1.07998 * 120.00382 * 1.52317 * 13 11 10 15 15 C 1.37879 * 119.99944 * 181.52774 * 13 11 10 16 16 N 1.31515 * 120.00185 * 182.09175 * 15 13 11 17 17 Si 1.86801 * 119.99735 * 2.08609 * 15 13 11 18 18 H 1.48499 * 109.47167 * 270.00117 * 17 15 13 19 19 H 1.48496 * 109.47277 * 30.00644 * 17 15 13 20 20 H 1.48505 * 109.46984 * 150.00407 * 17 15 13 21 21 O 1.43235 * 109.82887 * 298.54727 * 3 2 1 22 22 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46764 * 299.99574 * 1 2 3 24 24 H 1.08992 * 109.47306 * 59.99860 * 1 2 3 25 25 H 1.09003 * 109.46837 * 239.99875 * 2 1 3 26 26 H 1.09001 * 109.47231 * 120.00419 * 2 1 3 27 27 H 1.08001 * 126.57846 * 0.02682 * 5 4 3 28 28 H 1.08004 * 126.57159 * 180.16488 * 6 5 4 29 29 H 1.07998 * 125.79057 * 179.75046 * 7 6 5 30 30 H 1.09003 * 110.84625 * 259.06133 * 9 3 2 31 31 H 1.09000 * 110.84805 * 22.47226 * 9 3 2 32 32 H 1.08994 * 111.20695 * 208.06128 * 10 9 3 33 33 H 1.09004 * 111.08127 * 83.86334 * 10 9 3 34 34 H 1.08997 * 109.47180 * 291.80678 * 12 11 10 35 35 H 1.08996 * 109.46787 * 51.81177 * 12 11 10 36 36 H 1.08999 * 109.46813 * 171.80638 * 12 11 10 37 37 H 0.96996 * 119.99936 * 354.90183 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5324 2.1658 1.2208 5 6 0.3792 2.8531 1.3052 6 6 0.3015 3.3625 2.6218 7 6 1.4158 2.9632 3.2606 8 8 2.1577 2.2387 2.4071 9 6 3.5837 1.4522 -0.0105 10 6 3.9012 2.6332 -0.9696 11 6 2.7251 2.5204 -1.9721 12 6 3.0346 1.4668 -3.0374 13 6 2.4598 3.8552 -2.6194 14 1 3.0765 4.7069 -2.3731 15 6 1.4297 3.9892 -3.5260 16 7 1.2239 5.1435 -4.1217 17 14 0.3264 2.5311 -3.9082 18 1 0.8960 1.7640 -5.0450 19 1 0.2356 1.6527 -2.7143 20 1 -1.0295 3.0175 -4.2692 21 8 1.5949 2.1152 -1.1836 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 -0.3488 2.9878 0.5188 28 1 -0.4976 3.9607 3.0342 29 1 1.6708 3.1874 4.2859 30 1 3.9773 1.6455 0.9874 31 1 3.9749 0.5143 -0.4048 32 1 4.8588 2.4887 -1.4696 33 1 3.8762 3.5858 -0.4402 34 1 3.8474 1.8198 -3.6722 35 1 3.3298 0.5362 -2.5529 36 1 2.1471 1.2940 -3.6461 37 1 1.7483 5.9196 -3.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309490420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:20 Heat of formation + Delta-G solvation = -50.172483 kcal Electronic energy + Delta-G solvation = -19830.333665 eV Core-core repulsion = 16959.729352 eV Total energy + Delta-G solvation = -2870.604313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49413 -40.73305 -35.93235 -34.26395 -33.80910 -33.00312 -31.48138 -29.86894 -27.36246 -26.34458 -23.44759 -23.01703 -22.52281 -21.15435 -20.65660 -19.43331 -18.53729 -17.12758 -16.73789 -16.29738 -15.96331 -15.49908 -15.11682 -14.76102 -14.58811 -14.16600 -13.83754 -13.79773 -13.65990 -13.46187 -13.27426 -12.91879 -12.69035 -12.47458 -12.17020 -11.94354 -11.69472 -11.65039 -11.55640 -11.20124 -10.87450 -10.75046 -10.64980 -10.11317 -9.29344 -8.73916 -6.50988 0.88486 1.43930 1.57771 1.78061 1.88018 2.02125 2.51085 2.97560 3.39671 3.73853 3.80025 3.83705 4.21588 4.24395 4.30328 4.33176 4.40528 4.47936 4.68124 4.71295 4.75982 4.86889 4.94748 4.97748 5.03611 5.05677 5.12102 5.14927 5.19864 5.23917 5.37239 5.49096 5.58148 5.66520 5.94315 5.99191 6.22478 6.41450 6.76098 7.35773 8.61830 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.009522 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.045424 B = 2939.773373 C = 3016.149665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.170 3.830 4 C -0.016 4.016 5 C -0.214 4.214 6 C -0.231 4.231 7 C -0.045 4.045 8 O -0.183 6.183 9 C -0.135 4.135 10 C -0.128 4.128 11 C 0.190 3.810 12 C -0.153 4.153 13 C -0.585 4.585 14 H 0.019 0.981 15 C -0.009 4.009 16 N -0.943 5.943 17 Si 1.082 2.918 18 H -0.273 1.273 19 H -0.207 1.207 20 H -0.314 1.314 21 O -0.365 6.365 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.164 0.836 29 H 0.244 0.756 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -12.357 13.219 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.129 3.871 4 C -0.066 4.066 5 C -0.233 4.233 6 C -0.250 4.250 7 C -0.111 4.111 8 O -0.080 6.080 9 C -0.172 4.172 10 C -0.166 4.166 11 C 0.152 3.848 12 C -0.210 4.210 13 C -0.622 4.622 14 H 0.037 0.963 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.906 3.094 18 H -0.200 1.200 19 H -0.130 1.130 20 H -0.244 1.244 21 O -0.286 6.286 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.144 0.856 28 H 0.181 0.819 29 H 0.260 0.740 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.637 -12.949 12.295 17.867 hybrid contribution 1.117 2.007 0.648 2.387 sum 1.754 -10.942 12.943 17.039 Atomic orbital electron populations 1.21768 0.95498 1.01975 1.01551 1.21842 0.97154 0.92465 1.03536 1.20457 0.93803 0.91237 0.81590 1.22746 0.93576 1.03622 0.86704 1.21620 0.99814 1.03491 0.98404 1.22128 1.01885 1.06721 0.94228 1.24764 0.91709 0.97460 0.97176 1.83943 1.45249 1.58676 1.20107 1.23191 0.93468 0.99839 1.00717 1.23044 0.99465 0.97290 0.96787 1.20283 0.83573 0.91987 0.88964 1.22312 1.00895 0.98733 0.99085 1.22222 1.17538 0.95903 1.26576 0.96296 1.27210 0.97661 1.03440 0.92380 1.70970 1.43191 1.01630 1.42233 0.83868 0.73000 0.73646 0.78872 1.20012 1.13019 1.24358 1.88826 1.33093 1.75875 1.30786 0.90794 0.93414 0.93721 0.89676 0.89454 0.85624 0.81877 0.73968 0.89816 0.87556 0.89666 0.94371 0.92215 0.90674 0.94032 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.35 71.98 0.67 -3.67 16 2 C -0.11 -3.16 5.07 30.60 0.16 -3.00 16 3 C 0.17 5.95 0.87 -11.07 -0.01 5.94 16 4 C -0.02 -0.59 5.26 24.83 0.13 -0.46 16 5 C -0.21 -7.97 8.91 22.19 0.20 -7.77 16 6 C -0.23 -6.86 10.91 22.19 0.24 -6.61 16 7 C -0.04 -1.14 12.09 66.97 0.81 -0.33 16 8 O -0.18 -5.77 9.70 -2.53 -0.02 -5.79 16 9 C -0.13 -4.22 5.68 31.89 0.18 -4.04 16 10 C -0.13 -5.03 6.02 32.09 0.19 -4.84 16 11 C 0.19 8.65 0.67 -10.88 -0.01 8.64 16 12 C -0.15 -6.06 8.32 71.98 0.60 -5.46 16 13 C -0.59 -33.93 8.76 25.60 0.22 -33.70 16 14 H 0.02 1.21 7.99 -2.91 -0.02 1.19 16 15 C -0.01 -0.52 5.44 84.65 0.46 -0.06 16 16 N -0.94 -61.39 13.70 21.45 0.29 -61.10 16 17 Si 1.08 53.06 24.36 68.60 1.67 54.73 16 18 H -0.27 -12.36 6.88 99.48 0.68 -11.67 16 19 H -0.21 -9.16 4.74 99.48 0.47 -8.69 16 20 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 21 O -0.37 -16.11 6.12 -148.98 -0.91 -17.02 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.42 6.30 -2.39 -0.02 1.41 16 24 H 0.04 1.49 7.11 -2.39 -0.02 1.48 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.13 5.15 8.06 -2.91 -0.02 5.12 16 28 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.24 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.08 2.45 7.09 -2.39 -0.02 2.43 16 31 H 0.11 2.66 7.42 -2.39 -0.02 2.64 16 32 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 33 H 0.04 1.68 8.04 -2.38 -0.02 1.66 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.34 7.35 -2.39 -0.02 2.32 16 36 H 0.04 1.70 3.59 -2.39 -0.01 1.70 16 37 H 0.25 16.51 8.72 -92.71 -0.81 15.70 16 Total: -1.00 -71.58 288.33 5.63 -65.95 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.75 Total: 18.60 kcal Atomic # 6 Polarization: -59.21 SS G_CDS: 3.85 Total: -55.36 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.29 Total: -61.10 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.94 Total: -22.81 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 1.67 Total: 54.73 kcal Total: -71.58 5.63 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309490420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.774 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds