Wall clock time and date at job start Mon Mar 30 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47011 * 2 1 4 4 C 1.50702 * 110.54790 * 61.42508 * 3 2 1 5 5 C 1.34508 * 125.79136 * 268.57402 * 4 3 2 6 6 C 1.41390 * 106.84299 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.83739 * 359.97438 * 6 5 4 8 8 O 1.34305 * 125.78685 * 88.26914 * 4 3 2 9 9 C 1.55227 * 110.77658 * 184.28779 * 3 2 1 10 10 C 1.54813 * 101.98357 * 155.50393 * 9 3 2 11 11 C 1.54098 * 104.30472 * 339.26359 * 10 9 3 12 12 C 1.53000 * 109.87968 * 117.32763 * 11 10 9 13 13 C 1.50706 * 109.87782 * 238.47971 * 11 10 9 14 14 H 1.08000 * 119.99835 * 0.02562 * 13 11 10 15 15 C 1.37879 * 120.00175 * 180.02562 * 13 11 10 16 16 N 1.31504 * 120.00091 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99890 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.47398 * 89.99789 * 17 15 13 19 19 H 1.48496 * 109.47364 * 210.00281 * 17 15 13 20 20 H 1.48511 * 109.47184 * 330.00189 * 17 15 13 21 21 O 1.43744 * 107.29564 * 357.90152 * 11 10 9 22 22 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47286 * 299.99656 * 1 2 3 24 24 H 1.09003 * 109.46871 * 59.99863 * 1 2 3 25 25 H 1.09001 * 109.46885 * 240.00156 * 2 1 3 26 26 H 1.09000 * 109.47328 * 120.00357 * 2 1 3 27 27 H 1.08000 * 126.57985 * 359.96132 * 5 4 3 28 28 H 1.07999 * 126.58096 * 180.02562 * 6 5 4 29 29 H 1.08005 * 125.78695 * 180.02562 * 7 6 5 30 30 H 1.08999 * 110.89081 * 37.37124 * 9 3 2 31 31 H 1.09003 * 111.02102 * 273.69638 * 9 3 2 32 32 H 1.09002 * 110.48794 * 220.51904 * 10 9 3 33 33 H 1.09002 * 110.48657 * 98.00326 * 10 9 3 34 34 H 1.09010 * 109.47062 * 59.99846 * 12 11 10 35 35 H 1.09002 * 109.47423 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47237 * 300.00018 * 12 11 10 37 37 H 0.97002 * 120.00382 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5799 2.1662 1.2393 5 6 0.4495 2.8857 1.3561 6 6 0.4162 3.3845 2.6786 7 6 1.5281 2.9395 3.2910 8 8 2.2264 2.1974 2.4161 9 6 3.5880 1.4793 -0.1085 10 6 3.8342 2.8798 -0.7206 11 6 2.4891 3.2515 -1.3741 12 6 1.9101 4.4973 -0.7005 13 6 2.6877 3.5069 -2.8460 14 1 3.6716 3.4154 -3.2820 15 6 1.6135 3.8574 -3.6361 16 7 1.7869 4.0807 -4.9203 17 14 -0.0884 4.0149 -2.8821 18 1 -0.2954 5.4089 -2.4141 19 1 -1.1144 3.6773 -3.9011 20 1 -0.2082 3.0836 -1.7315 21 8 1.6007 2.1371 -1.1870 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 -0.2903 3.0515 0.5869 28 1 -0.3545 4.0034 3.1139 29 1 1.8092 3.1410 4.3142 30 1 3.9498 0.6951 -0.7735 31 1 4.0510 1.3977 0.8749 32 1 4.6235 2.8348 -1.4710 33 1 4.0907 3.5971 0.0590 34 1 2.6066 5.3282 -0.8133 35 1 0.9595 4.7544 -1.1679 36 1 1.7519 4.2970 0.3592 37 1 1.0311 4.3269 -5.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309490424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:26 Heat of formation + Delta-G solvation = -20.837253 kcal Electronic energy + Delta-G solvation = -20052.847192 eV Core-core repulsion = 17183.514949 eV Total energy + Delta-G solvation = -2869.332242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.36210 -39.06586 -34.24556 -32.71315 -32.22074 -31.33468 -29.79950 -29.04769 -25.45115 -24.89233 -22.02148 -21.71105 -21.32752 -19.59195 -19.15257 -17.43599 -16.72376 -15.91923 -15.17394 -14.94743 -14.02453 -13.89693 -13.61496 -13.30253 -12.91163 -12.66373 -12.53085 -12.45827 -12.26491 -12.00562 -11.98043 -11.29266 -11.09097 -10.91270 -10.65387 -10.38561 -10.25984 -9.96882 -9.85113 -9.75074 -9.47030 -9.02819 -8.55305 -8.44656 -7.96077 -6.10921 -4.18470 2.06607 2.97643 3.24839 3.36760 3.46588 3.64518 4.50497 4.61279 4.93310 5.07893 5.33545 5.36317 5.38305 5.44879 5.61128 5.75895 5.80124 5.87223 6.08808 6.13990 6.19087 6.29081 6.33157 6.35897 6.36918 6.41906 6.52809 6.60323 6.66406 6.67925 6.73004 6.84772 6.91243 7.23855 7.48301 7.68334 8.16545 8.45559 8.89708 9.53495 10.99620 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.010067 C = 0.009782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.644059 B = 2780.620355 C = 2861.581685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C 0.170 3.830 4 C -0.002 4.002 5 C -0.195 4.195 6 C -0.214 4.214 7 C -0.061 4.061 8 O -0.174 6.174 9 C -0.140 4.140 10 C -0.129 4.129 11 C 0.190 3.810 12 C -0.167 4.167 13 C -0.511 4.511 14 H 0.079 0.921 15 C 0.084 3.916 16 N -0.892 5.892 17 Si 0.880 3.120 18 H -0.289 1.289 19 H -0.304 1.304 20 H -0.224 1.224 21 O -0.335 6.335 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.196 0.804 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -4.864 14.482 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C 0.129 3.871 4 C -0.052 4.052 5 C -0.214 4.214 6 C -0.233 4.233 7 C -0.128 4.128 8 O -0.071 6.071 9 C -0.177 4.177 10 C -0.166 4.166 11 C 0.153 3.847 12 C -0.224 4.224 13 C -0.547 4.547 14 H 0.097 0.903 15 C -0.120 4.120 16 N -0.529 5.529 17 Si 0.710 3.290 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.147 1.147 21 O -0.254 6.254 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.213 0.787 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.093 -5.016 14.229 15.127 hybrid contribution -1.023 0.654 0.419 1.285 sum -2.116 -4.362 14.648 15.429 Atomic orbital electron populations 1.21766 0.95398 1.00871 1.02855 1.21457 0.96893 0.93118 1.02306 1.20672 0.93347 0.90915 0.82136 1.23092 0.93262 1.02401 0.86494 1.21556 0.99844 1.02651 0.97330 1.21808 1.00317 1.05890 0.95328 1.23865 0.94016 0.99183 0.95753 1.83977 1.46029 1.57133 1.19915 1.23138 0.94529 0.99217 1.00853 1.22857 0.99972 0.94662 0.99147 1.20140 0.85047 0.83344 0.96178 1.22714 1.00677 0.99630 0.99342 1.20955 0.96754 1.47180 0.89849 0.90261 1.25054 0.99460 0.92986 0.94542 1.69906 1.31877 1.45871 1.05244 0.87050 0.83305 0.78539 0.80075 1.21647 1.23202 1.14705 1.89409 1.54993 1.43271 1.37758 0.93273 0.92845 0.91485 0.90264 0.91536 0.83610 0.84009 0.78716 0.90315 0.91337 0.90662 0.92675 0.92685 0.93695 0.93429 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.45 37.16 0.35 -2.00 16 2 C -0.10 -1.59 5.29 -26.73 -0.14 -1.73 16 3 C 0.17 3.17 0.82 -90.59 -0.07 3.10 16 4 C 0.00 -0.03 3.69 -35.63 -0.13 -0.17 16 5 C -0.19 -3.45 6.63 -39.70 -0.26 -3.71 16 6 C -0.21 -3.15 10.91 -39.70 -0.43 -3.58 16 7 C -0.06 -0.82 12.09 29.42 0.36 -0.47 16 8 O -0.17 -2.84 10.05 5.69 0.06 -2.78 16 9 C -0.14 -2.47 6.08 -24.60 -0.15 -2.62 16 10 C -0.13 -2.61 6.07 -25.20 -0.15 -2.76 16 11 C 0.19 4.48 0.65 -91.20 -0.06 4.42 16 12 C -0.17 -3.76 7.46 37.16 0.28 -3.48 16 13 C -0.51 -14.33 8.87 -34.44 -0.31 -14.63 16 14 H 0.08 2.38 7.58 -52.49 -0.40 1.98 16 15 C 0.08 2.44 5.45 -17.82 -0.10 2.34 16 16 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 17 Si 0.88 22.44 23.91 -169.99 -4.06 18.38 16 18 H -0.29 -7.28 6.87 56.52 0.39 -6.89 16 19 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 20 H -0.22 -5.41 5.09 56.52 0.29 -5.12 16 21 O -0.33 -7.62 6.60 -35.23 -0.23 -7.85 16 22 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.05 0.83 6.50 -51.93 -0.34 0.49 16 24 H 0.07 1.18 7.78 -51.93 -0.40 0.78 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.15 2.78 7.76 -52.49 -0.41 2.37 16 28 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.20 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 31 H 0.07 1.08 7.57 -51.93 -0.39 0.69 16 32 H 0.07 1.55 7.40 -51.93 -0.38 1.16 16 33 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 34 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.04 1.07 3.17 -51.93 -0.16 0.90 16 36 H 0.05 0.98 4.48 -51.93 -0.23 0.75 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 282.01 15.07 4.25 4.25 Total: -1.00 -31.05 282.01 -5.38 -36.43 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.34 Total: 3.50 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -0.82 Total: -25.31 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.18 Total: -10.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.06 Total: 18.38 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.05 -5.38 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309490424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.590 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds