Wall clock time and date at job start Mon Mar 30 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47011 * 2 1 4 4 C 1.50702 * 110.54790 * 61.42508 * 3 2 1 5 5 C 1.34508 * 125.79136 * 268.57402 * 4 3 2 6 6 C 1.41390 * 106.84299 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.83739 * 359.97438 * 6 5 4 8 8 O 1.34305 * 125.78685 * 88.26914 * 4 3 2 9 9 C 1.55227 * 110.77658 * 184.28779 * 3 2 1 10 10 C 1.54813 * 101.98357 * 155.50393 * 9 3 2 11 11 C 1.54098 * 104.30472 * 339.26359 * 10 9 3 12 12 C 1.53000 * 109.87968 * 117.32763 * 11 10 9 13 13 C 1.50706 * 109.87782 * 238.47971 * 11 10 9 14 14 H 1.08000 * 119.99835 * 0.02562 * 13 11 10 15 15 C 1.37879 * 120.00175 * 180.02562 * 13 11 10 16 16 N 1.31504 * 120.00091 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99890 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.47398 * 89.99789 * 17 15 13 19 19 H 1.48496 * 109.47364 * 210.00281 * 17 15 13 20 20 H 1.48511 * 109.47184 * 330.00189 * 17 15 13 21 21 O 1.43744 * 107.29564 * 357.90152 * 11 10 9 22 22 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47286 * 299.99656 * 1 2 3 24 24 H 1.09003 * 109.46871 * 59.99863 * 1 2 3 25 25 H 1.09001 * 109.46885 * 240.00156 * 2 1 3 26 26 H 1.09000 * 109.47328 * 120.00357 * 2 1 3 27 27 H 1.08000 * 126.57985 * 359.96132 * 5 4 3 28 28 H 1.07999 * 126.58096 * 180.02562 * 6 5 4 29 29 H 1.08005 * 125.78695 * 180.02562 * 7 6 5 30 30 H 1.08999 * 110.89081 * 37.37124 * 9 3 2 31 31 H 1.09003 * 111.02102 * 273.69638 * 9 3 2 32 32 H 1.09002 * 110.48794 * 220.51904 * 10 9 3 33 33 H 1.09002 * 110.48657 * 98.00326 * 10 9 3 34 34 H 1.09010 * 109.47062 * 59.99846 * 12 11 10 35 35 H 1.09002 * 109.47423 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47237 * 300.00018 * 12 11 10 37 37 H 0.97002 * 120.00382 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5799 2.1662 1.2393 5 6 0.4495 2.8857 1.3561 6 6 0.4162 3.3845 2.6786 7 6 1.5281 2.9395 3.2910 8 8 2.2264 2.1974 2.4161 9 6 3.5880 1.4793 -0.1085 10 6 3.8342 2.8798 -0.7206 11 6 2.4891 3.2515 -1.3741 12 6 1.9101 4.4973 -0.7005 13 6 2.6877 3.5069 -2.8460 14 1 3.6716 3.4154 -3.2820 15 6 1.6135 3.8574 -3.6361 16 7 1.7869 4.0807 -4.9203 17 14 -0.0884 4.0149 -2.8821 18 1 -0.2954 5.4089 -2.4141 19 1 -1.1144 3.6773 -3.9011 20 1 -0.2082 3.0836 -1.7315 21 8 1.6007 2.1371 -1.1870 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 -0.2903 3.0515 0.5869 28 1 -0.3545 4.0034 3.1139 29 1 1.8092 3.1410 4.3142 30 1 3.9498 0.6951 -0.7735 31 1 4.0510 1.3977 0.8749 32 1 4.6235 2.8348 -1.4710 33 1 4.0907 3.5971 0.0590 34 1 2.6066 5.3282 -0.8133 35 1 0.9595 4.7544 -1.1679 36 1 1.7519 4.2970 0.3592 37 1 1.0311 4.3269 -5.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309490424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:25 Heat of formation + Delta-G solvation = -40.504549 kcal Electronic energy + Delta-G solvation = -20053.700030 eV Core-core repulsion = 17183.514949 eV Total energy + Delta-G solvation = -2870.185080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.57303 -40.65898 -35.87210 -34.19908 -33.90095 -32.99701 -31.42284 -30.29079 -27.24322 -26.64092 -23.52397 -22.92866 -22.57703 -21.22744 -20.58824 -19.10093 -18.39304 -17.34086 -16.74149 -16.46357 -15.70645 -15.33352 -15.08777 -14.79392 -14.73874 -14.34156 -14.09840 -13.81346 -13.68649 -13.47716 -13.30734 -12.94648 -12.68894 -12.47932 -12.36730 -11.87288 -11.83726 -11.76430 -11.54765 -11.43513 -10.99103 -10.74244 -10.59875 -10.24363 -9.20920 -8.35996 -6.46022 0.89572 1.29288 1.37050 1.61211 1.78252 2.07477 2.36962 2.88201 3.33838 3.73742 3.81064 3.90629 4.17419 4.23504 4.31688 4.35414 4.42439 4.44978 4.64353 4.73358 4.76936 4.82087 4.96105 4.97901 5.02670 5.03729 5.05712 5.17702 5.17830 5.25339 5.36781 5.43515 5.47598 5.64224 5.67150 6.19634 6.26524 6.46084 6.71026 7.29962 8.78290 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.010067 C = 0.009782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.644059 B = 2780.620355 C = 2861.581685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C 0.162 3.838 4 C -0.019 4.019 5 C -0.209 4.209 6 C -0.228 4.228 7 C -0.040 4.040 8 O -0.179 6.179 9 C -0.131 4.131 10 C -0.129 4.129 11 C 0.189 3.811 12 C -0.162 4.162 13 C -0.514 4.514 14 H 0.043 0.957 15 C 0.032 3.968 16 N -0.940 5.940 17 Si 0.935 3.065 18 H -0.284 1.284 19 H -0.311 1.311 20 H -0.206 1.206 21 O -0.357 6.357 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.165 0.835 29 H 0.243 0.757 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -5.625 18.113 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C 0.122 3.878 4 C -0.070 4.070 5 C -0.229 4.229 6 C -0.247 4.247 7 C -0.106 4.106 8 O -0.075 6.075 9 C -0.169 4.169 10 C -0.167 4.167 11 C 0.151 3.849 12 C -0.219 4.219 13 C -0.551 4.551 14 H 0.062 0.938 15 C -0.167 4.167 16 N -0.579 5.579 17 Si 0.764 3.236 18 H -0.211 1.211 19 H -0.240 1.240 20 H -0.129 1.129 21 O -0.277 6.277 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.143 0.857 28 H 0.182 0.818 29 H 0.259 0.741 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.386 -5.787 17.882 18.846 hybrid contribution -0.857 0.869 -0.629 1.373 sum -2.243 -4.918 17.253 18.080 Atomic orbital electron populations 1.21714 0.95268 1.02079 1.01382 1.21527 0.97030 0.91608 1.03574 1.20904 0.93759 0.91902 0.81227 1.22735 0.93768 1.03482 0.86977 1.21575 0.99541 1.03346 0.98420 1.22086 1.01759 1.06707 0.94143 1.24784 0.92692 0.96436 0.96732 1.83974 1.46235 1.57705 1.19621 1.23133 0.94250 0.97435 1.02062 1.22792 0.97773 0.96942 0.99163 1.19985 0.87155 0.84291 0.93444 1.22653 0.99754 0.99061 1.00432 1.21267 0.95077 1.46109 0.92631 0.93841 1.25802 1.03072 0.93092 0.94771 1.70033 1.32882 1.48298 1.06729 0.86191 0.78900 0.78997 0.79545 1.21108 1.24018 1.12900 1.89286 1.54823 1.43212 1.40419 0.90741 0.92892 0.94299 0.90375 0.88791 0.85682 0.81754 0.74060 0.89772 0.88780 0.91946 0.91251 0.92743 0.95083 0.91240 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.45 71.98 0.68 -3.60 16 2 C -0.10 -2.93 5.29 30.60 0.16 -2.77 16 3 C 0.16 5.70 0.82 -10.77 -0.01 5.69 16 4 C -0.02 -0.63 3.69 24.83 0.09 -0.54 16 5 C -0.21 -6.90 6.63 22.19 0.15 -6.75 16 6 C -0.23 -5.82 10.91 22.19 0.24 -5.58 16 7 C -0.04 -0.87 12.09 66.97 0.81 -0.07 16 8 O -0.18 -5.05 10.05 -2.55 -0.03 -5.08 16 9 C -0.13 -4.33 6.08 31.98 0.19 -4.14 16 10 C -0.13 -5.10 6.07 31.58 0.19 -4.90 16 11 C 0.19 8.85 0.65 -11.17 -0.01 8.85 16 12 C -0.16 -7.16 7.46 71.98 0.54 -6.62 16 13 C -0.51 -29.71 8.87 25.60 0.23 -29.48 16 14 H 0.04 2.75 7.58 -2.91 -0.02 2.72 16 15 C 0.03 1.91 5.45 84.66 0.46 2.37 16 16 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 17 Si 0.94 47.51 23.91 68.60 1.64 49.15 16 18 H -0.28 -14.01 6.87 99.48 0.68 -13.32 16 19 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 20 H -0.21 -9.84 5.09 99.48 0.51 -9.33 16 21 O -0.36 -16.03 6.60 -148.98 -0.98 -17.01 16 22 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.05 1.53 6.50 -2.39 -0.02 1.51 16 24 H 0.04 1.33 7.78 -2.39 -0.02 1.31 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.13 4.62 7.76 -2.91 -0.02 4.60 16 28 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.24 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 31 H 0.09 2.63 7.57 -2.39 -0.02 2.61 16 32 H 0.06 2.58 7.40 -2.39 -0.02 2.57 16 33 H 0.07 2.51 7.70 -2.39 -0.02 2.49 16 34 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.03 1.44 3.17 -2.39 -0.01 1.43 16 36 H 0.07 2.75 4.48 -2.39 -0.01 2.73 16 37 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -69.15 282.01 5.49 -63.66 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.83 Total: 16.52 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.73 Total: -47.54 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.30 Total: -59.70 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.01 Total: -22.09 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.64 Total: 49.15 kcal Total: -69.15 5.49 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309490424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.159 kcal (2) G-P(sol) polarization free energy of solvation -69.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds