Wall clock time and date at job start Mon Mar 30 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.50702 * 109.48429 * 305.00282 * 3 2 1 5 5 C 1.34515 * 125.79055 * 97.76642 * 4 3 2 6 6 C 1.41387 * 106.83942 * 179.89546 * 5 4 3 7 7 C 1.34511 * 106.84210 * 0.37044 * 6 5 4 8 8 O 1.34304 * 108.42034 * 359.77931 * 7 6 5 9 9 C 1.53092 * 109.48518 * 184.97995 * 3 2 1 10 10 C 1.53168 * 109.16594 * 182.41203 * 9 3 2 11 11 C 1.53168 * 109.04083 * 56.97844 * 10 9 3 12 12 C 1.53094 * 109.16302 * 303.01921 * 11 10 9 13 13 H 1.09001 * 109.47953 * 297.61541 * 12 11 10 14 14 C 1.50700 * 109.48171 * 177.58937 * 12 11 10 15 15 H 1.08005 * 120.00082 * 274.78701 * 14 12 11 16 16 C 1.37876 * 120.00124 * 94.78735 * 14 12 11 17 17 N 1.31512 * 120.00346 * 178.07904 * 16 14 12 18 18 Si 1.86802 * 119.99779 * 358.07699 * 16 14 12 19 19 H 1.48503 * 109.47144 * 84.86122 * 18 16 14 20 20 H 1.48500 * 109.47067 * 204.85869 * 18 16 14 21 21 H 1.48503 * 109.47059 * 324.85944 * 18 16 14 22 22 O 1.42898 * 109.42241 * 57.60237 * 12 11 10 23 23 H 1.09007 * 109.47515 * 59.99756 * 1 2 3 24 24 H 1.09003 * 109.47243 * 300.00132 * 1 2 3 25 25 H 1.09005 * 109.47587 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47063 * 120.00433 * 2 1 3 27 27 H 1.09005 * 109.46550 * 240.00124 * 2 1 3 28 28 H 1.07999 * 126.57743 * 0.03291 * 5 4 3 29 29 H 1.07995 * 126.57857 * 180.12682 * 6 5 4 30 30 H 1.07996 * 125.79121 * 179.79345 * 7 6 5 31 31 H 1.09001 * 109.51635 * 302.31761 * 9 3 2 32 32 H 1.09003 * 109.52012 * 62.49936 * 9 3 2 33 33 H 1.09002 * 109.54333 * 176.85097 * 10 9 3 34 34 H 1.09002 * 109.54183 * 297.01663 * 10 9 3 35 35 H 1.08998 * 109.52477 * 62.92367 * 11 10 9 36 36 H 1.09000 * 109.52719 * 183.11047 * 11 10 9 37 37 H 0.96996 * 120.00567 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4392 2.1880 -1.1637 5 6 0.3636 2.9941 -1.1108 6 6 0.1527 3.4822 -2.4209 7 6 1.1070 2.9387 -3.1976 8 8 1.8833 2.1556 -2.4309 9 6 3.5658 1.4446 -0.1253 10 6 4.0733 2.8884 -0.0639 11 6 3.5965 3.5306 1.2423 12 6 2.0695 3.4480 1.3147 13 1 1.6354 4.0138 0.4904 14 6 1.5965 4.0247 2.6242 15 1 1.5652 3.4042 3.5077 16 6 1.2038 5.3445 2.6946 17 7 0.7554 5.8377 3.8282 18 14 1.3087 6.4321 1.1795 19 1 0.0839 6.2565 0.3583 20 1 1.4253 7.8525 1.5969 21 1 2.5003 6.0521 0.3788 22 8 1.6626 2.0814 1.2212 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 -0.2244 3.2258 -0.2351 29 1 -0.6276 4.1582 -2.7379 30 1 1.2285 3.1042 -4.2579 31 1 3.9992 0.8709 0.6940 32 1 3.8537 0.9973 -1.0767 33 1 5.1628 2.8936 -0.0964 34 1 3.6808 3.4493 -0.9121 35 1 4.0306 2.9992 2.0892 36 1 3.9065 4.5753 1.2691 37 1 0.4787 6.7660 3.8777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309500116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:11 Heat of formation + Delta-G solvation = -41.948149 kcal Electronic energy + Delta-G solvation = -19859.995504 eV Core-core repulsion = 16989.747824 eV Total energy + Delta-G solvation = -2870.247679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33999 -38.92179 -34.22896 -33.10823 -32.43208 -32.32714 -29.69445 -28.78750 -26.10377 -23.91879 -21.82757 -21.75403 -21.25311 -20.21302 -19.07155 -17.12426 -16.70251 -15.78290 -15.59822 -15.01197 -14.33685 -14.00401 -13.75969 -13.36930 -13.15055 -12.73109 -12.64476 -12.46624 -12.23633 -12.10974 -11.59438 -11.38191 -11.07858 -11.00400 -10.88592 -10.64499 -10.54086 -10.30677 -9.88797 -9.78412 -9.52055 -8.93444 -8.83236 -8.39110 -7.99806 -6.17775 -4.18641 2.09148 3.02483 3.23234 3.29964 3.31032 3.34728 4.32509 4.46452 4.94481 4.99204 5.19642 5.31400 5.40998 5.46842 5.53939 5.67771 5.72389 5.75814 5.99394 6.11834 6.17656 6.19552 6.22844 6.31903 6.36057 6.38340 6.46260 6.54902 6.58629 6.70744 6.78449 6.81508 6.91886 7.26710 7.49334 7.63049 8.07856 8.61947 8.93734 9.43725 10.94581 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.010377 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.822493 B = 2697.526511 C = 3032.707189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C 0.194 3.806 4 C -0.018 4.018 5 C -0.196 4.196 6 C -0.212 4.212 7 C -0.062 4.062 8 O -0.174 6.174 9 C -0.137 4.137 10 C -0.125 4.125 11 C -0.145 4.145 12 C 0.181 3.819 13 H 0.031 0.969 14 C -0.505 4.505 15 H 0.082 0.918 16 C 0.080 3.920 17 N -0.889 5.889 18 Si 0.866 3.134 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.263 1.263 22 O -0.345 6.345 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.197 0.803 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -7.672 -12.470 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C 0.153 3.847 4 C -0.068 4.068 5 C -0.215 4.215 6 C -0.231 4.231 7 C -0.129 4.129 8 O -0.071 6.071 9 C -0.175 4.175 10 C -0.163 4.163 11 C -0.183 4.183 12 C 0.125 3.875 13 H 0.048 0.952 14 C -0.543 4.543 15 H 0.100 0.900 16 C -0.123 4.123 17 N -0.527 5.527 18 Si 0.693 3.307 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.188 1.188 22 O -0.264 6.264 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.213 0.787 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.330 -7.750 -12.305 14.728 hybrid contribution -0.050 1.246 -1.058 1.635 sum 2.280 -6.504 -13.363 15.036 Atomic orbital electron populations 1.21769 0.95095 1.00878 1.03093 1.21487 0.97145 0.93020 1.02305 1.19777 0.92307 0.91315 0.81342 1.23278 0.96879 1.02683 0.83972 1.21726 0.99882 1.01430 0.98426 1.21851 1.02371 1.05032 0.93892 1.23869 0.94329 0.97711 0.97024 1.83967 1.49146 1.55481 1.18497 1.22140 0.95096 0.98206 1.02034 1.21691 0.99699 0.95397 0.99483 1.22423 1.00175 1.00310 0.95413 1.20355 0.90120 0.79103 0.97951 0.95159 1.20734 1.43924 0.95840 0.93775 0.90040 1.24864 0.93828 0.97686 0.95914 1.69864 1.42221 1.15144 1.25464 0.87026 0.79761 0.80021 0.83881 1.19582 1.21164 1.18787 1.88197 1.78763 1.27910 1.31570 0.92845 0.91178 0.93291 0.90407 0.91302 0.82931 0.83927 0.78676 0.90620 0.91640 0.92613 0.92859 0.91720 0.92004 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.35 37.16 0.35 -1.94 16 2 C -0.10 -1.55 5.22 -26.74 -0.14 -1.69 16 3 C 0.19 3.54 0.77 -91.73 -0.07 3.47 16 4 C -0.02 -0.33 3.01 -35.62 -0.11 -0.43 16 5 C -0.20 -3.77 7.52 -39.70 -0.30 -4.07 16 6 C -0.21 -3.47 10.91 -39.70 -0.43 -3.90 16 7 C -0.06 -0.90 12.09 29.41 0.36 -0.55 16 8 O -0.17 -2.93 10.30 5.70 0.06 -2.88 16 9 C -0.14 -2.29 4.79 -26.60 -0.13 -2.41 16 10 C -0.13 -2.28 5.78 -26.56 -0.15 -2.44 16 11 C -0.14 -3.16 5.32 -26.60 -0.14 -3.30 16 12 C 0.18 4.39 1.69 -27.83 -0.05 4.34 16 13 H 0.03 0.76 3.09 -51.93 -0.16 0.60 16 14 C -0.51 -14.37 9.24 -34.44 -0.32 -14.69 16 15 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 17 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 18 Si 0.87 21.51 26.48 -169.99 -4.50 17.01 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.26 -6.34 6.45 56.52 0.36 -5.97 16 22 O -0.35 -7.77 9.06 -35.23 -0.32 -8.09 16 23 H 0.05 0.83 6.52 -51.93 -0.34 0.49 16 24 H 0.07 1.19 7.82 -51.93 -0.41 0.78 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.15 3.24 7.70 -52.49 -0.40 2.83 16 29 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 1.02 7.33 -51.93 -0.38 0.64 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.38 7.21 -51.93 -0.37 1.01 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 290.66 15.07 4.38 4.38 Total: -1.00 -30.63 290.66 -6.30 -36.93 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.46 Total: 4.14 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -1.23 Total: -25.40 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.26 Total: -10.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.50 Total: 17.01 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.63 -6.30 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.015 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds