Wall clock time and date at job start Mon Mar 30 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.50702 * 109.48429 * 305.00282 * 3 2 1 5 5 C 1.34515 * 125.79055 * 97.76642 * 4 3 2 6 6 C 1.41387 * 106.83942 * 179.89546 * 5 4 3 7 7 C 1.34511 * 106.84210 * 0.37044 * 6 5 4 8 8 O 1.34304 * 108.42034 * 359.77931 * 7 6 5 9 9 C 1.53092 * 109.48518 * 184.97995 * 3 2 1 10 10 C 1.53168 * 109.16594 * 182.41203 * 9 3 2 11 11 C 1.53168 * 109.04083 * 56.97844 * 10 9 3 12 12 C 1.53094 * 109.16302 * 303.01921 * 11 10 9 13 13 H 1.09001 * 109.47953 * 297.61541 * 12 11 10 14 14 C 1.50700 * 109.48171 * 177.58937 * 12 11 10 15 15 H 1.08005 * 120.00082 * 274.78701 * 14 12 11 16 16 C 1.37876 * 120.00124 * 94.78735 * 14 12 11 17 17 N 1.31512 * 120.00346 * 178.07904 * 16 14 12 18 18 Si 1.86802 * 119.99779 * 358.07699 * 16 14 12 19 19 H 1.48503 * 109.47144 * 84.86122 * 18 16 14 20 20 H 1.48500 * 109.47067 * 204.85869 * 18 16 14 21 21 H 1.48503 * 109.47059 * 324.85944 * 18 16 14 22 22 O 1.42898 * 109.42241 * 57.60237 * 12 11 10 23 23 H 1.09007 * 109.47515 * 59.99756 * 1 2 3 24 24 H 1.09003 * 109.47243 * 300.00132 * 1 2 3 25 25 H 1.09005 * 109.47587 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47063 * 120.00433 * 2 1 3 27 27 H 1.09005 * 109.46550 * 240.00124 * 2 1 3 28 28 H 1.07999 * 126.57743 * 0.03291 * 5 4 3 29 29 H 1.07995 * 126.57857 * 180.12682 * 6 5 4 30 30 H 1.07996 * 125.79121 * 179.79345 * 7 6 5 31 31 H 1.09001 * 109.51635 * 302.31761 * 9 3 2 32 32 H 1.09003 * 109.52012 * 62.49936 * 9 3 2 33 33 H 1.09002 * 109.54333 * 176.85097 * 10 9 3 34 34 H 1.09002 * 109.54183 * 297.01663 * 10 9 3 35 35 H 1.08998 * 109.52477 * 62.92367 * 11 10 9 36 36 H 1.09000 * 109.52719 * 183.11047 * 11 10 9 37 37 H 0.96996 * 120.00567 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4392 2.1880 -1.1637 5 6 0.3636 2.9941 -1.1108 6 6 0.1527 3.4822 -2.4209 7 6 1.1070 2.9387 -3.1976 8 8 1.8833 2.1556 -2.4309 9 6 3.5658 1.4446 -0.1253 10 6 4.0733 2.8884 -0.0639 11 6 3.5965 3.5306 1.2423 12 6 2.0695 3.4480 1.3147 13 1 1.6354 4.0138 0.4904 14 6 1.5965 4.0247 2.6242 15 1 1.5652 3.4042 3.5077 16 6 1.2038 5.3445 2.6946 17 7 0.7554 5.8377 3.8282 18 14 1.3087 6.4321 1.1795 19 1 0.0839 6.2565 0.3583 20 1 1.4253 7.8525 1.5969 21 1 2.5003 6.0521 0.3788 22 8 1.6626 2.0814 1.2212 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 -0.2244 3.2258 -0.2351 29 1 -0.6276 4.1582 -2.7379 30 1 1.2285 3.1042 -4.2579 31 1 3.9992 0.8709 0.6940 32 1 3.8537 0.9973 -1.0767 33 1 5.1628 2.8936 -0.0964 34 1 3.6808 3.4493 -0.9121 35 1 4.0306 2.9992 2.0892 36 1 3.9065 4.5753 1.2691 37 1 0.4787 6.7660 3.8777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309500116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:11 Heat of formation + Delta-G solvation = -61.067486 kcal Electronic energy + Delta-G solvation = -19860.824580 eV Core-core repulsion = 16989.747824 eV Total energy + Delta-G solvation = -2871.076756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.63292 -40.47491 -35.86465 -34.60390 -34.37775 -33.72742 -31.27007 -30.17727 -27.86654 -25.43290 -23.57178 -23.04411 -22.58624 -21.68478 -20.50479 -19.12404 -18.22133 -17.37510 -17.04905 -16.45388 -15.91898 -15.68615 -15.17633 -14.79324 -14.75046 -14.56185 -14.03721 -13.86922 -13.69958 -13.39366 -13.21166 -12.98772 -12.85282 -12.65703 -12.51258 -12.11220 -11.90422 -11.85566 -11.77454 -11.36631 -11.04094 -10.93758 -10.66410 -10.14831 -9.30268 -8.41241 -6.46999 0.83711 1.24604 1.25767 1.36262 1.70880 2.04325 2.22293 2.75573 3.18822 3.68471 3.75064 3.95856 4.10359 4.15587 4.27114 4.31406 4.35940 4.41054 4.57501 4.61206 4.82851 4.88856 4.91610 4.95796 5.00947 5.03671 5.10895 5.15691 5.16361 5.18719 5.30793 5.44404 5.49297 5.56703 5.62683 6.01394 6.21501 6.60306 6.77039 7.19697 8.75560 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.010377 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.822493 B = 2697.526511 C = 3032.707189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C 0.181 3.819 4 C -0.024 4.024 5 C -0.224 4.224 6 C -0.235 4.235 7 C -0.036 4.036 8 O -0.173 6.173 9 C -0.134 4.134 10 C -0.118 4.118 11 C -0.145 4.145 12 C 0.188 3.812 13 H 0.028 0.972 14 C -0.518 4.518 15 H 0.034 0.966 16 C 0.028 3.972 17 N -0.936 5.936 18 Si 0.929 3.071 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.248 1.248 22 O -0.370 6.370 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.160 0.840 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -8.477 -16.212 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C 0.140 3.860 4 C -0.075 4.075 5 C -0.243 4.243 6 C -0.254 4.254 7 C -0.102 4.102 8 O -0.069 6.069 9 C -0.171 4.171 10 C -0.156 4.156 11 C -0.183 4.183 12 C 0.132 3.868 13 H 0.046 0.954 14 C -0.556 4.556 15 H 0.052 0.948 16 C -0.171 4.171 17 N -0.576 5.576 18 Si 0.752 3.248 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.172 1.172 22 O -0.290 6.290 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.178 0.822 30 H 0.264 0.736 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.779 -8.577 -16.052 18.588 hybrid contribution -0.559 1.395 0.131 1.508 sum 3.221 -7.182 -15.921 17.760 Atomic orbital electron populations 1.21714 0.95511 1.02029 1.01173 1.21571 0.96797 0.91307 1.04055 1.20186 0.93840 0.92280 0.79660 1.23082 0.96780 1.02845 0.84784 1.21645 1.00621 1.03162 0.98877 1.22100 1.04085 1.06356 0.92819 1.24791 0.92125 0.94848 0.98478 1.83972 1.49333 1.55866 1.17731 1.22170 0.93463 0.97441 1.04062 1.21636 1.01519 0.95898 0.96518 1.22302 0.98104 1.00190 0.97751 1.20062 0.91596 0.80046 0.95107 0.95424 1.20989 1.44141 0.95904 0.94556 0.94781 1.25668 0.93376 0.99056 0.99002 1.69999 1.43891 1.15833 1.27835 0.86017 0.80417 0.78194 0.80128 1.18975 1.20175 1.17179 1.88109 1.79444 1.26845 1.34564 0.93508 0.94366 0.90532 0.89799 0.88207 0.86395 0.82234 0.73599 0.89705 0.88576 0.89581 0.93425 0.92322 0.92996 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.35 71.98 0.67 -3.66 16 2 C -0.10 -2.83 5.22 30.59 0.16 -2.67 16 3 C 0.18 6.33 0.77 -11.51 -0.01 6.32 16 4 C -0.02 -0.85 3.01 24.83 0.07 -0.78 16 5 C -0.22 -8.54 7.52 22.19 0.17 -8.37 16 6 C -0.23 -7.10 10.91 22.19 0.24 -6.86 16 7 C -0.04 -0.88 12.09 66.97 0.81 -0.07 16 8 O -0.17 -5.13 10.30 -2.53 -0.03 -5.15 16 9 C -0.13 -4.03 4.79 30.68 0.15 -3.88 16 10 C -0.12 -3.97 5.78 30.71 0.18 -3.80 16 11 C -0.15 -6.25 5.32 30.68 0.16 -6.09 16 12 C 0.19 9.32 1.69 29.88 0.05 9.38 16 13 H 0.03 1.40 3.09 -2.39 -0.01 1.39 16 14 C -0.52 -31.07 9.24 25.60 0.24 -30.83 16 15 H 0.03 2.29 8.06 -2.91 -0.02 2.26 16 16 C 0.03 1.66 5.47 84.65 0.46 2.12 16 17 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 18 Si 0.93 45.18 26.48 68.60 1.82 47.00 16 19 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.25 -11.35 6.45 99.48 0.64 -10.71 16 22 O -0.37 -17.03 9.06 -148.98 -1.35 -18.38 16 23 H 0.05 1.42 6.52 -2.38 -0.02 1.40 16 24 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 25 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.12 5.27 7.70 -2.91 -0.02 5.25 16 29 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.25 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 2.35 8.03 -2.39 -0.02 2.33 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 1.66 7.33 -2.39 -0.02 1.64 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 2.29 7.21 -2.39 -0.02 2.27 16 37 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -70.51 290.66 5.07 -65.43 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.98 Total: 19.07 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.35 Total: -49.19 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.38 Total: -23.54 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.82 Total: 47.00 kcal Total: -70.51 5.07 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.366 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds