Wall clock time and date at job start Mon Mar 30 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 C 1.50704 * 109.47903 * 304.99977 * 3 2 1 5 5 C 1.34515 * 125.79063 * 89.97406 * 4 3 2 6 6 C 1.41385 * 106.83992 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.83926 * 0.23220 * 6 5 4 8 8 O 1.34305 * 108.42433 * 359.63135 * 7 6 5 9 9 C 1.53090 * 109.48220 * 184.97603 * 3 2 1 10 10 C 1.53178 * 109.16404 * 297.61405 * 9 3 2 11 11 C 1.53173 * 109.03623 * 303.01773 * 10 9 3 12 12 C 1.53102 * 109.16292 * 56.98002 * 11 10 9 13 13 H 1.09002 * 109.47663 * 62.37495 * 12 11 10 14 14 C 1.50690 * 109.47945 * 182.40657 * 12 11 10 15 15 H 1.08004 * 120.00529 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99791 * 179.97438 * 14 12 11 17 17 N 1.31512 * 120.00179 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99978 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47407 * 89.99715 * 18 16 14 20 20 H 1.48498 * 109.47054 * 209.99925 * 18 16 14 21 21 H 1.48500 * 109.47140 * 329.99991 * 18 16 14 22 22 O 1.42898 * 109.41297 * 302.39314 * 12 11 10 23 23 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47145 * 300.00054 * 1 2 3 25 25 H 1.09002 * 109.47103 * 59.99823 * 1 2 3 26 26 H 1.09006 * 109.46784 * 239.99623 * 2 1 3 27 27 H 1.09002 * 109.47103 * 120.00177 * 2 1 3 28 28 H 1.08001 * 126.57926 * 0.06103 * 5 4 3 29 29 H 1.08002 * 126.57514 * 179.97438 * 6 5 4 30 30 H 1.07998 * 125.78467 * 179.77218 * 7 6 5 31 31 H 1.09005 * 109.52160 * 57.51772 * 9 3 2 32 32 H 1.08998 * 109.52361 * 177.64235 * 9 3 2 33 33 H 1.09000 * 109.54078 * 62.88607 * 10 9 3 34 34 H 1.08993 * 109.54176 * 183.14769 * 10 9 3 35 35 H 1.08997 * 109.52285 * 176.88308 * 11 10 9 36 36 H 1.09001 * 109.52443 * 297.01472 * 11 10 9 37 37 H 0.96993 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4393 2.1879 -1.1638 5 6 0.2828 2.8746 -1.1457 6 6 0.1041 3.4104 -2.4418 7 6 1.1596 3.0147 -3.1759 8 8 1.9675 2.2787 -2.3953 9 6 3.5658 1.4445 -0.1252 10 6 4.1711 0.7377 1.0915 11 6 3.6916 1.4386 2.3662 12 6 2.1608 1.4369 2.3952 13 1 1.7991 0.4091 2.4268 14 6 1.6805 2.1767 3.6170 15 1 2.3948 2.6058 4.3042 16 6 0.3290 2.3068 3.8572 17 7 -0.5408 1.7848 3.0203 18 14 -0.2664 3.2245 5.3713 19 1 -0.4389 4.6624 5.0428 20 1 -1.5660 2.6585 5.8139 21 1 0.7323 3.0821 6.4611 22 8 1.6628 2.0815 1.2212 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 -0.3815 2.9943 -0.3026 29 1 -0.7233 4.0171 -2.7790 30 1 1.3296 3.2509 -4.2159 31 1 3.8574 0.9185 -1.0343 32 1 3.9265 2.4722 -0.1674 33 1 3.8500 -0.3039 1.1053 34 1 5.2587 0.7845 1.0367 35 1 4.0730 0.9085 3.2389 36 1 4.0558 2.4659 2.3761 37 1 -1.4915 1.8759 3.1894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309500118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:13 Heat of formation + Delta-G solvation = -55.548761 kcal Electronic energy + Delta-G solvation = -19685.067467 eV Core-core repulsion = 16814.230020 eV Total energy + Delta-G solvation = -2870.837446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.46520 -40.45555 -35.41318 -34.47192 -33.83944 -33.55567 -31.37372 -29.74365 -27.54769 -25.36168 -23.72259 -23.42213 -22.32607 -21.35808 -19.79377 -18.75522 -18.16332 -17.16000 -16.64956 -16.39772 -16.02859 -15.65283 -15.43062 -14.56768 -14.46052 -14.28432 -13.75920 -13.65359 -13.49512 -13.30732 -13.02464 -12.82900 -12.71827 -12.47430 -12.28505 -12.04723 -11.97861 -11.64053 -11.47106 -11.31999 -10.78800 -10.70729 -10.42824 -9.70760 -9.20597 -8.08094 -6.27123 0.90672 1.41713 1.43788 1.52636 1.81175 1.98791 2.43429 3.13589 3.69539 3.74166 3.96739 4.05587 4.23868 4.27758 4.29480 4.39815 4.43663 4.54151 4.67991 4.76840 4.90648 4.98510 5.01868 5.08248 5.10721 5.16120 5.19990 5.24849 5.28378 5.30413 5.44514 5.60586 5.70177 5.74328 5.91097 6.28137 6.32149 6.72976 7.23749 7.46814 8.96558 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.008847 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.929124 B = 3164.309629 C = 3766.283926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C 0.186 3.814 4 C -0.004 4.004 5 C -0.205 4.205 6 C -0.230 4.230 7 C -0.040 4.040 8 O -0.181 6.181 9 C -0.133 4.133 10 C -0.113 4.113 11 C -0.143 4.143 12 C 0.220 3.780 13 H 0.001 0.999 14 C -0.553 4.553 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.876 5.876 18 Si 0.951 3.049 19 H -0.282 1.282 20 H -0.281 1.281 21 H -0.266 1.266 22 O -0.365 6.365 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -1.371 -10.499 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.145 3.855 4 C -0.054 4.054 5 C -0.225 4.225 6 C -0.248 4.248 7 C -0.107 4.107 8 O -0.078 6.078 9 C -0.171 4.171 10 C -0.151 4.151 11 C -0.181 4.181 12 C 0.165 3.835 13 H 0.019 0.981 14 C -0.590 4.590 15 H 0.077 0.923 16 C -0.170 4.170 17 N -0.512 5.512 18 Si 0.777 3.223 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.190 1.190 22 O -0.285 6.285 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.184 0.816 30 H 0.265 0.735 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.481 -1.380 -10.601 11.592 hybrid contribution -0.825 0.585 1.027 1.441 sum 3.656 -0.796 -9.574 10.279 Atomic orbital electron populations 1.21794 0.95609 1.00814 1.02810 1.21944 0.97172 0.95431 1.01985 1.19477 0.92647 0.90270 0.83107 1.21942 0.94963 1.03502 0.85022 1.21604 0.99033 1.02964 0.98863 1.22121 1.02700 1.06738 0.93288 1.24823 0.90779 0.96767 0.98295 1.83933 1.45858 1.58369 1.19628 1.22089 0.94265 1.01150 0.99562 1.21624 1.00810 0.99253 0.93382 1.22183 0.98089 0.99887 0.97899 1.19626 0.88729 0.92600 0.82569 0.98144 1.21384 0.92380 1.38943 1.06324 0.92250 1.25751 0.97168 0.95365 0.98673 1.70056 1.01486 1.43182 1.36459 0.85685 0.77834 0.78627 0.80168 1.20822 1.20604 1.19039 1.88287 1.75564 1.52792 1.11855 0.93003 0.91283 0.93749 0.90668 0.91446 0.86234 0.81637 0.73462 0.89666 0.92613 0.91401 0.89809 0.91614 0.93450 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 9.23 71.98 0.66 -5.65 16 2 C -0.13 -4.95 4.32 30.59 0.13 -4.82 16 3 C 0.19 7.68 0.74 -11.51 -0.01 7.67 16 4 C 0.00 -0.18 5.07 24.83 0.13 -0.05 16 5 C -0.21 -8.39 8.79 22.19 0.20 -8.19 16 6 C -0.23 -7.14 10.91 22.19 0.24 -6.90 16 7 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 8 O -0.18 -6.08 10.31 -2.52 -0.03 -6.11 16 9 C -0.13 -4.69 4.66 30.68 0.14 -4.55 16 10 C -0.11 -3.79 5.72 30.71 0.18 -3.62 16 11 C -0.14 -5.92 5.36 30.69 0.16 -5.76 16 12 C 0.22 11.15 2.17 29.88 0.06 11.21 16 13 H 0.00 0.06 6.24 -2.39 -0.01 0.04 16 14 C -0.55 -30.93 8.79 25.60 0.23 -30.70 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.03 1.92 5.40 84.66 0.46 2.37 16 17 N -0.88 -50.06 11.74 21.45 0.25 -49.80 16 18 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 O -0.36 -18.64 8.42 -148.98 -1.25 -19.89 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 3.42 6.69 -2.39 -0.02 3.40 16 25 H 0.04 1.77 6.20 -2.39 -0.01 1.76 16 26 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.07 2.71 4.98 -2.39 -0.01 2.70 16 28 H 0.12 5.69 8.06 -2.91 -0.02 5.66 16 29 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.25 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.17 6.73 -2.39 -0.02 2.15 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -64.05 292.63 5.44 -58.61 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.05 Total: 20.58 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 3.39 Total: -49.24 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.25 Total: -49.80 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.28 Total: -26.00 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.05 5.44 -58.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.062 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds