Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47905 * 2 1 4 4 C 1.50700 * 109.47279 * 299.84477 * 3 2 1 5 5 C 1.34517 * 125.78650 * 95.56870 * 4 3 2 6 6 C 1.41384 * 106.84150 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.83818 * 0.02562 * 6 5 4 8 8 O 1.34302 * 108.42514 * 359.72958 * 7 6 5 9 9 C 1.53095 * 109.48182 * 120.02089 * 2 1 3 10 10 C 1.53177 * 109.16411 * 177.60249 * 9 2 1 11 11 C 1.53178 * 109.03411 * 303.02244 * 10 9 2 12 12 C 1.53091 * 109.16503 * 56.98082 * 11 10 9 13 13 H 1.08993 * 109.48117 * 62.37752 * 12 11 10 14 14 C 1.50709 * 109.47768 * 182.40790 * 12 11 10 15 15 H 1.07998 * 119.99829 * 95.40714 * 14 12 11 16 16 C 1.37875 * 119.99537 * 275.39897 * 14 12 11 17 17 N 1.31518 * 119.99421 * 174.75970 * 16 14 12 18 18 Si 1.86800 * 120.00583 * 354.76357 * 16 14 12 19 19 H 1.48505 * 109.46856 * 94.20371 * 18 16 14 20 20 H 1.48494 * 109.47193 * 214.20742 * 18 16 14 21 21 H 1.48502 * 109.46749 * 334.20875 * 18 16 14 22 22 O 1.42902 * 109.41578 * 302.38668 * 12 11 10 23 23 H 1.09000 * 109.46940 * 299.97390 * 1 2 3 24 24 H 1.08991 * 109.47353 * 59.97761 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47513 * 59.84712 * 3 2 1 27 27 H 1.09002 * 109.47162 * 179.85196 * 3 2 1 28 28 H 1.08004 * 126.57842 * 0.04796 * 5 4 3 29 29 H 1.07998 * 126.57937 * 180.02562 * 6 5 4 30 30 H 1.08003 * 125.78836 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.51587 * 57.69958 * 9 2 1 32 32 H 1.08992 * 109.57411 * 297.54094 * 9 2 1 33 33 H 1.08991 * 109.54341 * 183.15799 * 10 9 2 34 34 H 1.09001 * 109.61359 * 62.92990 * 10 9 2 35 35 H 1.09001 * 109.52206 * 176.88904 * 11 10 9 36 36 H 1.08999 * 109.52510 * 297.07037 * 11 10 9 37 37 H 0.96998 * 119.99692 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.5411 2.1518 -1.2324 5 6 0.4423 2.9245 -1.3045 6 6 0.3518 3.3842 -2.6385 7 6 1.4002 2.8645 -3.3018 8 8 2.1203 2.1235 -2.4438 9 6 2.0406 -0.7221 1.2497 10 6 3.5711 -0.7705 1.2124 11 6 4.0178 -1.4596 -0.0806 12 6 3.4309 -0.7090 -1.2788 13 1 3.8193 0.3092 -1.2956 14 6 3.8173 -1.4156 -2.5527 15 1 3.1401 -2.1265 -3.0026 16 6 5.0351 -1.1542 -3.1438 17 7 5.4167 -1.8442 -4.1965 18 14 6.1433 0.1798 -2.4496 19 1 7.1137 -0.4260 -1.5027 20 1 6.8790 0.8388 -3.5585 21 1 5.3179 1.1870 -1.7357 22 8 2.0067 -0.6742 -1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5141 -0.8897 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6747 1.9571 0.8886 27 1 3.1302 1.4422 0.0027 28 1 -0.2396 3.1506 -0.4981 29 1 -0.4126 4.0289 -3.0465 30 1 1.6270 3.0203 -4.3462 31 1 1.6444 -1.7374 1.2710 32 1 1.7147 -0.1852 2.1404 33 1 3.9392 -1.3322 2.0708 34 1 3.9701 0.2435 1.2417 35 1 5.1061 -1.4492 -0.1417 36 1 3.6617 -2.4898 -0.0861 37 1 6.2733 -1.6600 -4.6126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309500217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -40.400289 kcal Electronic energy + Delta-G solvation = -19653.993332 eV Core-core repulsion = 16783.812773 eV Total energy + Delta-G solvation = -2870.180559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.12826 -39.19903 -34.01525 -32.83697 -32.56813 -31.98588 -30.19219 -27.76182 -26.27752 -25.09696 -21.97960 -21.30205 -21.02298 -20.23463 -18.49161 -17.01475 -16.77640 -15.71279 -15.40563 -15.03902 -14.44385 -14.07883 -13.88587 -13.33888 -12.96759 -12.56937 -12.45717 -12.38124 -12.23221 -12.05016 -11.91510 -11.52499 -11.30117 -11.11742 -10.92321 -10.69321 -10.38686 -10.30723 -9.80341 -9.72629 -9.46813 -8.74061 -8.72408 -8.34002 -7.89239 -6.09690 -4.08392 2.21602 2.98708 3.24530 3.33732 3.35381 3.51290 4.37932 4.59964 5.01101 5.13480 5.20893 5.27691 5.34796 5.40211 5.43218 5.55332 5.64558 5.82352 5.86052 6.01332 6.10637 6.15622 6.16164 6.21049 6.26209 6.37918 6.42602 6.50013 6.62996 6.69936 6.79858 6.82466 6.91449 7.37337 7.65517 7.71825 8.16694 8.75525 9.01925 9.51910 11.03290 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.011068 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.659398 B = 2529.110709 C = 3407.370140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.114 3.886 3 C -0.075 4.075 4 C 0.022 3.978 5 C -0.229 4.229 6 C -0.223 4.223 7 C -0.042 4.042 8 O -0.151 6.151 9 C -0.136 4.136 10 C -0.130 4.130 11 C -0.148 4.148 12 C 0.182 3.818 13 H 0.029 0.971 14 C -0.497 4.497 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.895 5.895 18 Si 0.864 3.136 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.258 1.258 22 O -0.357 6.357 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 8.674 9.423 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.074 3.926 3 C -0.112 4.112 4 C -0.029 4.029 5 C -0.248 4.248 6 C -0.243 4.243 7 C -0.110 4.110 8 O -0.045 6.045 9 C -0.174 4.174 10 C -0.167 4.167 11 C -0.186 4.186 12 C 0.126 3.874 13 H 0.047 0.953 14 C -0.535 4.535 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.533 5.533 18 Si 0.691 3.309 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.183 1.183 22 O -0.277 6.277 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.213 0.787 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.328 8.398 9.068 14.369 hybrid contribution 0.724 0.931 0.376 1.238 sum -6.604 9.329 9.445 14.827 Atomic orbital electron populations 1.21782 0.93330 1.02437 1.01929 1.21298 0.94336 0.88973 0.88023 1.20952 1.02808 0.96212 0.91231 1.22170 0.94760 0.99981 0.86035 1.21400 1.00428 1.04923 0.98070 1.21670 1.01472 1.06562 0.94564 1.23994 0.93953 0.97033 0.96053 1.84212 1.46535 1.55593 1.18121 1.22119 0.96645 1.01347 0.97257 1.21774 0.95214 1.00598 0.99151 1.22488 1.00504 1.00997 0.94649 1.20368 0.77608 0.95361 0.94086 0.95330 1.20742 1.02571 1.23710 1.06492 0.90242 1.24802 0.97329 0.95764 0.94502 1.69880 1.21616 1.40294 1.21559 0.87011 0.81080 0.83545 0.79241 1.20138 1.21081 1.18305 1.88105 1.24124 1.75699 1.39739 0.92115 0.91617 0.92030 0.88896 0.89456 0.84193 0.84130 0.78721 0.91011 0.92042 0.92641 0.92675 0.92418 0.91654 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.49 37.16 0.32 -1.74 16 2 C 0.11 2.01 0.79 -90.57 -0.07 1.94 16 3 C -0.07 -1.24 4.12 -27.89 -0.11 -1.36 16 4 C 0.02 0.40 5.38 -35.62 -0.19 0.20 16 5 C -0.23 -3.55 9.74 -39.70 -0.39 -3.93 16 6 C -0.22 -3.35 10.91 -39.70 -0.43 -3.78 16 7 C -0.04 -0.70 12.09 29.41 0.36 -0.34 16 8 O -0.15 -3.11 10.65 5.71 0.06 -3.05 16 9 C -0.14 -2.10 4.92 -26.59 -0.13 -2.23 16 10 C -0.13 -2.19 5.72 -26.55 -0.15 -2.34 16 11 C -0.15 -3.18 5.27 -26.59 -0.14 -3.32 16 12 C 0.18 4.46 1.89 -27.83 -0.05 4.41 16 13 H 0.03 0.73 3.53 -51.93 -0.18 0.55 16 14 C -0.50 -14.52 9.24 -34.44 -0.32 -14.84 16 15 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 17 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 18 Si 0.86 21.59 26.53 -169.99 -4.51 17.08 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.23 5.93 56.52 0.34 -5.90 16 22 O -0.36 -8.28 9.48 -35.23 -0.33 -8.61 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.06 6.52 -51.93 -0.34 0.72 16 25 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.09 1.58 4.98 -51.93 -0.26 1.32 16 28 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.20 2.59 8.06 -52.48 -0.42 2.16 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.89 6.62 -51.93 -0.34 0.55 16 35 H 0.06 1.27 6.99 -51.93 -0.36 0.90 16 36 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -32.34 290.93 -6.38 -38.72 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.34 Total: 3.41 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -1.42 Total: -25.15 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.27 Total: -11.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.51 Total: 17.08 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.34 -6.38 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.678 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds