Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47905 * 2 1 4 4 C 1.50700 * 109.47279 * 299.84477 * 3 2 1 5 5 C 1.34517 * 125.78650 * 95.56870 * 4 3 2 6 6 C 1.41384 * 106.84150 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.83818 * 0.02562 * 6 5 4 8 8 O 1.34302 * 108.42514 * 359.72958 * 7 6 5 9 9 C 1.53095 * 109.48182 * 120.02089 * 2 1 3 10 10 C 1.53177 * 109.16411 * 177.60249 * 9 2 1 11 11 C 1.53178 * 109.03411 * 303.02244 * 10 9 2 12 12 C 1.53091 * 109.16503 * 56.98082 * 11 10 9 13 13 H 1.08993 * 109.48117 * 62.37752 * 12 11 10 14 14 C 1.50709 * 109.47768 * 182.40790 * 12 11 10 15 15 H 1.07998 * 119.99829 * 95.40714 * 14 12 11 16 16 C 1.37875 * 119.99537 * 275.39897 * 14 12 11 17 17 N 1.31518 * 119.99421 * 174.75970 * 16 14 12 18 18 Si 1.86800 * 120.00583 * 354.76357 * 16 14 12 19 19 H 1.48505 * 109.46856 * 94.20371 * 18 16 14 20 20 H 1.48494 * 109.47193 * 214.20742 * 18 16 14 21 21 H 1.48502 * 109.46749 * 334.20875 * 18 16 14 22 22 O 1.42902 * 109.41578 * 302.38668 * 12 11 10 23 23 H 1.09000 * 109.46940 * 299.97390 * 1 2 3 24 24 H 1.08991 * 109.47353 * 59.97761 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47513 * 59.84712 * 3 2 1 27 27 H 1.09002 * 109.47162 * 179.85196 * 3 2 1 28 28 H 1.08004 * 126.57842 * 0.04796 * 5 4 3 29 29 H 1.07998 * 126.57937 * 180.02562 * 6 5 4 30 30 H 1.08003 * 125.78836 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.51587 * 57.69958 * 9 2 1 32 32 H 1.08992 * 109.57411 * 297.54094 * 9 2 1 33 33 H 1.08991 * 109.54341 * 183.15799 * 10 9 2 34 34 H 1.09001 * 109.61359 * 62.92990 * 10 9 2 35 35 H 1.09001 * 109.52206 * 176.88904 * 11 10 9 36 36 H 1.08999 * 109.52510 * 297.07037 * 11 10 9 37 37 H 0.96998 * 119.99692 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.5411 2.1518 -1.2324 5 6 0.4423 2.9245 -1.3045 6 6 0.3518 3.3842 -2.6385 7 6 1.4002 2.8645 -3.3018 8 8 2.1203 2.1235 -2.4438 9 6 2.0406 -0.7221 1.2497 10 6 3.5711 -0.7705 1.2124 11 6 4.0178 -1.4596 -0.0806 12 6 3.4309 -0.7090 -1.2788 13 1 3.8193 0.3092 -1.2956 14 6 3.8173 -1.4156 -2.5527 15 1 3.1401 -2.1265 -3.0026 16 6 5.0351 -1.1542 -3.1438 17 7 5.4167 -1.8442 -4.1965 18 14 6.1433 0.1798 -2.4496 19 1 7.1137 -0.4260 -1.5027 20 1 6.8790 0.8388 -3.5585 21 1 5.3179 1.1870 -1.7357 22 8 2.0067 -0.6742 -1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5141 -0.8897 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6747 1.9571 0.8886 27 1 3.1302 1.4422 0.0027 28 1 -0.2396 3.1506 -0.4981 29 1 -0.4126 4.0289 -3.0465 30 1 1.6270 3.0203 -4.3462 31 1 1.6444 -1.7374 1.2710 32 1 1.7147 -0.1852 2.1404 33 1 3.9392 -1.3322 2.0708 34 1 3.9701 0.2435 1.2417 35 1 5.1061 -1.4492 -0.1417 36 1 3.6617 -2.4898 -0.0861 37 1 6.2733 -1.6600 -4.6126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309500217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -61.670779 kcal Electronic energy + Delta-G solvation = -19654.915689 eV Core-core repulsion = 16783.812773 eV Total energy + Delta-G solvation = -2871.102917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.40112 -40.69876 -35.71623 -34.43304 -34.20796 -33.52010 -31.58764 -29.41002 -27.53016 -26.74467 -23.66150 -22.65228 -22.48439 -21.51062 -19.97634 -19.02760 -18.17926 -17.19239 -17.06881 -16.50375 -15.79025 -15.77844 -15.36228 -14.80050 -14.68510 -14.31328 -13.87426 -13.56381 -13.46071 -13.40092 -13.18056 -13.06488 -12.86828 -12.68318 -12.61328 -12.23937 -11.93276 -11.80019 -11.70163 -11.30373 -10.90520 -10.71486 -10.57734 -10.00911 -9.17120 -8.36943 -6.41062 0.94854 1.23557 1.29046 1.38194 1.81683 2.25705 2.34129 2.90625 3.23597 3.78824 3.88842 4.03316 4.11863 4.17128 4.26452 4.27944 4.38082 4.45073 4.60515 4.66001 4.79948 4.87370 4.94168 4.98241 5.01259 5.08590 5.10737 5.13028 5.22867 5.29876 5.39344 5.41917 5.60136 5.68553 5.79655 6.07232 6.42085 6.63353 6.94416 7.25424 8.80762 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.011068 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.659398 B = 2529.110709 C = 3407.370140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 C -0.073 4.073 4 C -0.012 4.012 5 C -0.216 4.216 6 C -0.216 4.216 7 C -0.072 4.072 8 O -0.199 6.199 9 C -0.131 4.131 10 C -0.124 4.124 11 C -0.148 4.148 12 C 0.195 3.805 13 H 0.025 0.975 14 C -0.515 4.515 15 H 0.023 0.977 16 C 0.022 3.978 17 N -0.944 5.944 18 Si 0.932 3.068 19 H -0.255 1.255 20 H -0.281 1.281 21 H -0.246 1.246 22 O -0.393 6.393 23 H 0.104 0.896 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.138 0.862 27 H 0.067 0.933 28 H 0.174 0.826 29 H 0.173 0.827 30 H 0.213 0.787 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 11.114 12.723 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 C -0.110 4.110 4 C -0.062 4.062 5 C -0.235 4.235 6 C -0.235 4.235 7 C -0.139 4.139 8 O -0.095 6.095 9 C -0.169 4.169 10 C -0.162 4.162 11 C -0.186 4.186 12 C 0.138 3.862 13 H 0.043 0.957 14 C -0.552 4.552 15 H 0.041 0.959 16 C -0.175 4.175 17 N -0.584 5.584 18 Si 0.755 3.245 19 H -0.180 1.180 20 H -0.207 1.207 21 H -0.170 1.170 22 O -0.313 6.313 23 H 0.123 0.877 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.190 0.810 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.267 10.837 12.392 18.421 hybrid contribution 0.848 0.125 -0.727 1.124 sum -7.419 10.962 11.665 17.643 Atomic orbital electron populations 1.21796 0.91377 1.02534 1.03197 1.21786 0.95851 0.89553 0.86836 1.21048 1.01671 0.95722 0.92519 1.22680 0.96117 1.01580 0.85843 1.21813 0.99597 1.03134 0.98973 1.22106 1.01146 1.05856 0.94393 1.24609 0.94802 0.97500 0.96969 1.84163 1.48481 1.57142 1.19750 1.22130 0.95345 1.01550 0.97854 1.21754 0.96483 1.00990 0.96949 1.22341 0.99689 1.00244 0.96374 1.20002 0.78947 0.94507 0.92746 0.95716 1.21047 1.02041 1.23331 1.08824 0.95858 1.25676 0.98931 0.98152 0.94770 1.70034 1.22567 1.42370 1.23454 0.85945 0.79109 0.80438 0.79020 1.17979 1.20663 1.16969 1.88015 1.22932 1.77042 1.43345 0.87729 0.93308 0.92602 0.84432 0.91400 0.80903 0.80975 0.77052 0.91517 0.87351 0.89780 0.91451 0.93326 0.93322 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.49 71.98 0.61 -2.96 16 2 C 0.10 3.26 0.79 -10.76 -0.01 3.25 16 3 C -0.07 -2.20 4.12 29.85 0.12 -2.07 16 4 C -0.01 -0.41 5.38 24.83 0.13 -0.28 16 5 C -0.22 -6.03 9.74 22.19 0.22 -5.81 16 6 C -0.22 -5.98 10.91 22.19 0.24 -5.74 16 7 C -0.07 -2.37 12.09 66.97 0.81 -1.56 16 8 O -0.20 -8.31 10.65 -2.49 -0.03 -8.34 16 9 C -0.13 -3.55 4.92 30.69 0.15 -3.40 16 10 C -0.12 -3.79 5.72 30.71 0.18 -3.62 16 11 C -0.15 -6.33 5.27 30.68 0.16 -6.16 16 12 C 0.19 9.75 1.89 29.88 0.06 9.81 16 13 H 0.03 1.28 3.53 -2.39 -0.01 1.27 16 14 C -0.51 -31.87 9.24 25.60 0.24 -31.63 16 15 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 16 C 0.02 1.36 5.47 84.65 0.46 1.82 16 17 N -0.94 -61.00 13.96 21.45 0.30 -60.70 16 18 Si 0.93 45.49 26.53 68.60 1.82 47.31 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.25 -11.40 5.93 99.48 0.59 -10.81 16 22 O -0.39 -18.56 9.48 -148.98 -1.41 -19.98 16 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.47 6.52 -2.39 -0.02 1.46 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 26 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.07 2.30 4.98 -2.39 -0.01 2.29 16 28 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.92 6.62 -2.39 -0.02 1.90 16 35 H 0.05 2.11 6.99 -2.39 -0.02 2.09 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -76.61 290.93 4.99 -71.63 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.93 Total: 18.44 kcal Atomic # 6 Polarization: -51.73 SS G_CDS: 3.37 Total: -48.36 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.30 Total: -60.70 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.44 Total: -28.31 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.82 Total: 47.31 kcal Total: -76.61 4.99 -71.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.955 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds