Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47878 * 2 1 4 4 C 1.50698 * 109.47350 * 59.97673 * 3 2 1 5 5 C 1.34522 * 125.78783 * 89.71285 * 4 3 2 6 6 C 1.41377 * 106.83839 * 179.89037 * 5 4 3 7 7 C 1.34519 * 106.84428 * 0.37576 * 6 5 4 8 8 O 1.34298 * 108.41608 * 359.77181 * 7 6 5 9 9 C 1.53092 * 109.47717 * 239.97967 * 2 1 3 10 10 C 1.53181 * 109.16239 * 297.60834 * 9 2 1 11 11 C 1.53178 * 109.03781 * 303.02236 * 10 9 2 12 12 C 1.53100 * 109.16203 * 56.97847 * 11 10 9 13 13 H 1.09006 * 109.47357 * 62.38692 * 12 11 10 14 14 C 1.50696 * 109.47750 * 182.40436 * 12 11 10 15 15 H 1.07999 * 120.00319 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.42898 * 109.42360 * 302.39741 * 12 11 10 23 23 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47170 * 300.01946 * 1 2 3 25 25 H 1.09001 * 109.47478 * 60.02407 * 1 2 3 26 26 H 1.08999 * 109.46920 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46866 * 299.97953 * 3 2 1 28 28 H 1.07997 * 126.57594 * 0.03413 * 5 4 3 29 29 H 1.08007 * 126.57791 * 180.16822 * 6 5 4 30 30 H 1.07993 * 125.78859 * 179.74531 * 7 6 5 31 31 H 1.09008 * 109.51721 * 177.70876 * 9 2 1 32 32 H 1.08991 * 109.52451 * 57.51922 * 9 2 1 33 33 H 1.08997 * 109.54119 * 183.15795 * 10 9 2 34 34 H 1.08998 * 109.61423 * 62.93390 * 10 9 2 35 35 H 1.08992 * 109.52297 * 297.07744 * 11 10 9 36 36 H 1.08998 * 109.52192 * 176.88045 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.5375 2.1531 1.2301 5 6 2.1633 2.2045 2.4199 6 6 1.3448 2.9717 3.2802 7 6 0.2639 3.3363 2.5674 8 8 0.3861 2.8376 1.3264 9 6 2.0405 -0.7221 -1.2497 10 6 1.5760 -2.1813 -1.2122 11 6 2.0770 -2.8321 0.0807 12 6 1.5651 -2.0284 1.2790 13 1 0.4755 -2.0554 1.2959 14 6 2.1025 -2.6281 2.5528 15 1 2.7444 -3.4957 2.5124 16 6 1.7746 -2.0691 3.7699 17 7 2.2440 -2.5922 4.8815 18 14 0.6638 -0.5690 3.8397 19 1 1.4908 0.6628 3.7772 20 1 -0.2747 -0.5940 2.6891 21 1 -0.1080 -0.5833 5.1083 22 8 2.0067 -0.6741 1.1664 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5141 0.8898 25 1 -0.3634 0.5134 -0.8902 26 1 3.1302 1.4422 0.0005 27 1 1.6772 1.9562 -0.8902 28 1 3.1103 1.7492 2.6691 29 1 1.5469 3.2152 4.3129 30 1 -0.5622 3.9290 2.9314 31 1 3.1298 -0.6871 -1.2711 32 1 1.6419 -0.2356 -2.1398 33 1 1.9828 -2.7156 -2.0708 34 1 0.4870 -2.2195 -1.2415 35 1 3.1669 -2.8397 0.0861 36 1 1.7044 -3.8546 0.1420 37 1 2.0137 -2.1987 5.7376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309500226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = -36.435469 kcal Electronic energy + Delta-G solvation = -19846.678184 eV Core-core repulsion = 16976.669552 eV Total energy + Delta-G solvation = -2870.008632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14456 -39.14881 -33.99746 -32.91952 -32.49140 -32.06331 -29.73562 -27.92244 -26.26799 -25.15600 -22.22707 -21.32891 -20.98815 -19.83880 -18.35830 -16.95540 -16.80975 -15.94635 -15.45863 -14.89899 -14.37271 -14.11317 -13.81524 -13.35992 -13.10022 -12.48811 -12.44796 -12.28101 -12.19497 -11.87533 -11.68917 -11.55821 -11.28532 -10.96510 -10.87531 -10.68193 -10.33395 -9.94122 -9.86148 -9.53690 -9.19757 -8.91652 -8.36227 -8.20524 -7.86992 -6.04382 -4.14645 2.16644 3.11562 3.41019 3.54706 3.62514 3.73072 4.55290 4.67798 4.98129 5.20592 5.31736 5.35820 5.45219 5.49870 5.54034 5.66848 5.79079 5.79811 5.88877 6.02588 6.12143 6.19357 6.26998 6.29242 6.35861 6.43391 6.48612 6.56661 6.66905 6.72640 6.77923 6.79898 6.99853 7.27161 7.60196 7.70299 8.47313 8.58447 8.95792 9.58555 11.04066 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.013969 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.916754 B = 2003.978631 C = 3197.717898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 C -0.023 4.023 4 C -0.008 4.008 5 C -0.173 4.173 6 C -0.206 4.206 7 C -0.064 4.064 8 O -0.182 6.182 9 C -0.135 4.135 10 C -0.123 4.123 11 C -0.135 4.135 12 C 0.183 3.817 13 H 0.019 0.981 14 C -0.515 4.515 15 H 0.077 0.923 16 C 0.083 3.917 17 N -0.895 5.895 18 Si 0.879 3.121 19 H -0.227 1.227 20 H -0.269 1.269 21 H -0.315 1.315 22 O -0.363 6.363 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.195 0.805 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 9.868 -9.905 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.060 4.060 4 C -0.057 4.057 5 C -0.192 4.192 6 C -0.225 4.225 7 C -0.132 4.132 8 O -0.079 6.079 9 C -0.173 4.173 10 C -0.160 4.160 11 C -0.172 4.172 12 C 0.128 3.872 13 H 0.036 0.964 14 C -0.552 4.552 15 H 0.095 0.905 16 C -0.121 4.121 17 N -0.532 5.532 18 Si 0.709 3.291 19 H -0.151 1.151 20 H -0.195 1.195 21 H -0.244 1.244 22 O -0.284 6.284 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.769 9.990 -9.829 14.286 hybrid contribution -0.700 0.452 0.381 0.916 sum -3.469 10.443 -9.448 14.503 Atomic orbital electron populations 1.22487 0.96712 1.02475 1.01693 1.21249 0.92765 0.90728 0.88416 1.20181 1.01089 0.92555 0.92176 1.22109 0.85927 0.99142 0.98512 1.21454 1.02967 1.02465 0.92339 1.21797 0.96385 1.03386 1.00956 1.23783 1.01608 1.04628 0.83142 1.83954 1.37372 1.54783 1.31791 1.22083 1.01358 0.96487 0.97335 1.21669 1.00465 0.95293 0.98594 1.22071 1.01179 0.99475 0.94513 1.20264 0.94402 0.78520 0.94041 0.96397 1.20932 1.32940 1.13401 0.87908 0.90455 1.25082 0.95106 0.96670 0.95242 1.69956 1.44479 1.40872 0.97916 0.86929 0.81364 0.85478 0.75366 1.15135 1.19454 1.24400 1.88262 1.73264 1.27574 1.39268 0.91772 0.91976 0.92938 0.88574 0.89930 0.83604 0.84177 0.78873 0.91354 0.92204 0.92789 0.92380 0.91997 0.92115 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 7.40 37.16 0.27 -2.87 16 2 C 0.11 1.94 0.79 -90.57 -0.07 1.87 16 3 C -0.02 -0.36 5.03 -27.88 -0.14 -0.50 16 4 C -0.01 -0.13 5.24 -35.62 -0.19 -0.32 16 5 C -0.17 -3.24 7.92 -39.70 -0.31 -3.56 16 6 C -0.21 -3.50 9.72 -39.70 -0.39 -3.89 16 7 C -0.06 -1.00 12.09 29.42 0.36 -0.64 16 8 O -0.18 -3.13 10.01 5.73 0.06 -3.08 16 9 C -0.13 -2.07 4.92 -26.59 -0.13 -2.20 16 10 C -0.12 -1.99 5.72 -26.55 -0.15 -2.14 16 11 C -0.13 -2.71 5.36 -26.59 -0.14 -2.85 16 12 C 0.18 4.38 1.65 -27.83 -0.05 4.33 16 13 H 0.02 0.46 5.40 -51.93 -0.28 0.18 16 14 C -0.52 -14.82 9.38 -34.44 -0.32 -15.15 16 15 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 16 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 17 N -0.89 -27.89 13.96 55.43 0.77 -27.12 16 18 Si 0.88 22.66 25.61 -169.99 -4.35 18.31 16 19 H -0.23 -5.44 3.15 56.52 0.18 -5.26 16 20 H -0.27 -6.89 5.26 56.52 0.30 -6.59 16 21 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 22 O -0.36 -8.18 7.05 -35.23 -0.25 -8.43 16 23 H 0.06 1.18 4.98 -51.93 -0.26 0.93 16 24 H 0.06 1.25 5.76 -51.93 -0.30 0.95 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 29 H 0.14 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.92 6.63 -51.93 -0.34 0.57 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -32.11 281.18 -6.61 -38.72 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.71 Total: 2.90 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -1.36 Total: -25.54 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.19 Total: -11.51 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.35 Total: 18.31 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.11 -6.61 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.282 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds