Wall clock time and date at job start Mon Mar 30 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.48031 * 2 1 4 4 C 1.50696 * 109.47360 * 304.97817 * 3 2 1 5 5 C 1.34512 * 125.79261 * 89.99829 * 4 3 2 6 6 C 1.41379 * 106.84086 * 180.02562 * 5 4 3 7 7 C 1.34512 * 106.84332 * 0.02562 * 6 5 4 8 8 O 1.34301 * 108.41872 * 359.97438 * 7 6 5 9 9 C 1.53097 * 109.48895 * 120.03018 * 2 1 3 10 10 C 1.53177 * 109.16012 * 62.37753 * 9 2 1 11 11 C 1.53173 * 109.03935 * 56.98195 * 10 9 2 12 12 C 1.53090 * 109.16480 * 303.01821 * 11 10 9 13 13 H 1.09001 * 109.48790 * 297.61838 * 12 11 10 14 14 C 1.50698 * 109.48372 * 177.58901 * 12 11 10 15 15 H 1.08002 * 119.99914 * 0.05873 * 14 12 11 16 16 C 1.37876 * 120.00136 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99766 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00227 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46889 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47152 * 119.99549 * 18 16 14 21 21 H 1.48499 * 109.47026 * 239.99852 * 18 16 14 22 22 O 1.42905 * 109.48129 * 239.97741 * 2 1 3 23 23 H 1.09001 * 109.47116 * 59.99858 * 1 2 3 24 24 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46995 * 299.99987 * 1 2 3 26 26 H 1.09002 * 109.47007 * 184.97117 * 3 2 1 27 27 H 1.09004 * 109.47045 * 64.97933 * 3 2 1 28 28 H 1.07997 * 126.57601 * 0.06110 * 5 4 3 29 29 H 1.08007 * 126.57604 * 180.02562 * 6 5 4 30 30 H 1.08004 * 125.79431 * 180.02562 * 7 6 5 31 31 H 1.08990 * 109.51894 * 182.28188 * 9 2 1 32 32 H 1.08996 * 109.51959 * 302.47756 * 9 2 1 33 33 H 1.08997 * 109.54943 * 297.11268 * 10 9 2 34 34 H 1.09006 * 109.54190 * 176.85097 * 10 9 2 35 35 H 1.08996 * 109.52416 * 183.10777 * 11 10 9 36 36 H 1.09009 * 109.52113 * 62.92153 * 11 10 9 37 37 H 0.97006 * 119.99876 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 1.4399 2.1876 -1.1641 5 6 0.2837 2.8748 -1.1464 6 6 0.1054 3.4101 -2.4427 7 6 1.1631 3.0176 -3.1753 8 8 1.9682 2.2776 -2.3956 9 6 2.0408 -0.7223 1.2495 10 6 1.5761 -2.1814 1.2120 11 6 2.0768 -2.8322 -0.0810 12 6 1.5647 -2.0285 -1.2792 13 1 0.4751 -2.0551 -1.2960 14 6 2.1019 -2.6280 -2.5532 15 1 2.7434 -3.4959 -2.5130 16 6 1.7738 -2.0689 -3.7700 17 7 0.9917 -1.0127 -3.8190 18 14 2.4390 -2.8125 -5.3493 19 1 3.2884 -3.9864 -5.0242 20 1 1.3072 -3.2427 -6.2090 21 1 3.2508 -1.7991 -6.0699 22 8 2.0066 -0.6741 -1.1665 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.1266 1.4435 -0.0891 27 1 1.7516 1.9299 0.9313 28 1 -0.3806 2.9950 -0.3034 29 1 -0.7214 4.0176 -2.7800 30 1 1.3360 3.2575 -4.2141 31 1 3.1299 -0.6873 1.2707 32 1 1.6423 -0.2359 2.1398 33 1 0.4871 -2.2182 1.2408 34 1 1.9830 -2.7158 2.0705 35 1 1.7042 -3.8546 -0.1422 36 1 3.1668 -2.8398 -0.0866 37 1 0.7611 -0.6192 -4.6751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309500231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:37 Heat of formation + Delta-G solvation = -60.512859 kcal Electronic energy + Delta-G solvation = -19598.505876 eV Core-core repulsion = 16727.453170 eV Total energy + Delta-G solvation = -2871.052706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.25064 -40.39838 -35.62590 -34.27802 -33.91624 -33.38149 -30.96074 -29.07089 -27.70651 -26.62740 -23.84429 -22.67449 -22.39921 -21.02676 -19.69081 -18.62594 -18.02701 -16.97414 -16.69319 -16.54173 -15.88314 -15.71201 -15.30973 -14.78644 -14.21737 -14.08980 -13.61892 -13.50599 -13.47351 -13.18642 -13.10227 -12.82983 -12.74331 -12.57223 -12.41705 -12.17532 -11.97661 -11.60893 -11.54592 -11.22186 -10.75930 -10.57316 -10.38928 -9.53952 -9.07940 -8.06627 -6.25697 1.07775 1.37409 1.39543 1.50473 1.90667 2.42218 2.44152 3.08440 3.63269 3.88705 4.04861 4.17810 4.22567 4.29915 4.36172 4.37919 4.52585 4.55560 4.71027 4.79162 4.83834 4.88549 5.05746 5.06029 5.08687 5.17272 5.19630 5.23696 5.35465 5.36614 5.51768 5.55223 5.66825 5.86178 5.88437 6.31404 6.51317 6.74840 7.36037 7.49882 8.98347 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.011458 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.286551 B = 2443.100835 C = 3800.491440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 C -0.027 4.027 4 C 0.004 3.996 5 C -0.228 4.228 6 C -0.225 4.225 7 C -0.061 4.061 8 O -0.190 6.190 9 C -0.132 4.132 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.222 3.778 13 H -0.015 1.015 14 C -0.557 4.557 15 H 0.056 0.944 16 C 0.032 3.968 17 N -0.875 5.875 18 Si 0.949 3.051 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.284 1.284 22 O -0.374 6.374 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.212 0.788 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 6.731 8.877 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C -0.064 4.064 4 C -0.047 4.047 5 C -0.247 4.247 6 C -0.243 4.243 7 C -0.128 4.128 8 O -0.086 6.086 9 C -0.169 4.169 10 C -0.152 4.152 11 C -0.179 4.179 12 C 0.166 3.834 13 H 0.003 0.997 14 C -0.595 4.595 15 H 0.074 0.926 16 C -0.172 4.172 17 N -0.511 5.511 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.210 1.210 22 O -0.294 6.294 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.228 0.772 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.773 6.802 8.551 10.954 hybrid contribution -0.141 -0.518 -1.304 1.410 sum -0.914 6.284 7.247 9.635 Atomic orbital electron populations 1.22307 0.96557 1.01199 1.01659 1.21529 0.93184 0.91501 0.87972 1.20341 1.00687 0.92231 0.93164 1.22601 0.96152 1.00728 0.85196 1.21694 0.98559 1.04819 0.99658 1.22005 1.01087 1.06794 0.94462 1.24389 0.92859 0.97642 0.97949 1.84066 1.46559 1.56798 1.21170 1.22109 1.01191 0.95911 0.97737 1.21614 1.00619 0.95952 0.97051 1.22147 1.00086 0.99303 0.96354 1.19432 0.92299 0.79530 0.92139 0.99714 1.21427 1.32965 1.13345 0.91748 0.92614 1.25782 0.94591 0.94827 1.02001 1.70201 1.34569 1.21085 1.25264 0.85666 0.78394 0.78520 0.79947 1.19079 1.20244 1.20969 1.88317 1.72644 1.26939 1.41459 0.94328 0.93933 0.89913 0.90745 0.84670 0.82040 0.81755 0.77170 0.91752 0.88449 0.92181 0.90113 0.92679 0.93416 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 7.35 71.98 0.53 -5.47 16 2 C 0.10 3.77 0.79 -10.76 -0.01 3.76 16 3 C -0.03 -0.92 5.06 29.85 0.15 -0.77 16 4 C 0.00 0.14 5.53 24.83 0.14 0.28 16 5 C -0.23 -7.77 9.24 22.19 0.21 -7.57 16 6 C -0.22 -7.50 10.91 22.19 0.24 -7.25 16 7 C -0.06 -2.25 12.09 66.97 0.81 -1.44 16 8 O -0.19 -8.44 10.65 -2.47 -0.03 -8.47 16 9 C -0.13 -4.07 4.92 30.69 0.15 -3.92 16 10 C -0.12 -3.76 5.72 30.71 0.18 -3.59 16 11 C -0.14 -5.99 5.36 30.68 0.16 -5.83 16 12 C 0.22 11.68 2.17 29.88 0.06 11.75 16 13 H -0.01 -0.84 6.34 -2.39 -0.02 -0.86 16 14 C -0.56 -32.56 8.79 25.60 0.23 -32.33 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 16 C 0.03 1.85 5.40 84.65 0.46 2.31 16 17 N -0.88 -52.93 12.84 21.45 0.28 -52.66 16 18 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 O -0.37 -19.30 9.02 -148.98 -1.34 -20.64 16 23 H 0.04 1.67 6.20 -2.39 -0.01 1.66 16 24 H 0.04 1.71 4.98 -2.39 -0.01 1.70 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.14 3.23 8.14 -2.38 -0.02 3.21 16 28 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.21 6.30 8.06 -2.91 -0.02 6.28 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.94 6.62 -2.39 -0.02 1.93 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -70.77 296.21 5.28 -65.50 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.04 Total: 18.83 kcal Atomic # 6 Polarization: -53.37 SS G_CDS: 3.30 Total: -50.06 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.28 Total: -52.66 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.37 Total: -29.11 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.77 5.28 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.982 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds