Wall clock time and date at job start Mon Mar 30 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47248 * 2 1 4 4 O 1.42909 * 109.47310 * 239.99815 * 2 1 3 5 5 C 1.52997 * 109.47124 * 120.00399 * 2 1 3 6 6 C 1.52992 * 109.47443 * 184.99916 * 5 2 1 7 7 C 1.53002 * 109.47778 * 179.97438 * 6 5 2 8 8 O 1.42893 * 109.47618 * 179.97438 * 7 6 5 9 9 C 1.35678 * 116.99866 * 180.02562 * 8 7 6 10 10 C 1.39310 * 119.81876 * 359.72212 * 9 8 7 11 11 C 1.36438 * 120.18241 * 179.75783 * 10 9 8 12 12 C 1.40825 * 119.81402 * 0.51738 * 11 10 9 13 13 C 1.41215 * 120.18048 * 179.71422 * 12 11 10 14 14 H 1.08005 * 119.99763 * 204.56194 * 13 12 11 15 15 C 1.39890 * 120.00210 * 24.56475 * 13 12 11 16 16 N 1.30883 * 119.99792 * 17.92968 * 15 13 12 17 17 Si 1.86793 * 120.00093 * 197.93372 * 15 13 12 18 18 H 1.48494 * 109.47420 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47088 * 119.99869 * 17 15 13 20 20 H 1.48502 * 109.47068 * 239.99475 * 17 15 13 21 21 C 1.40837 * 119.64225 * 359.74278 * 12 11 10 22 22 C 1.36441 * 119.81085 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47638 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46964 * 300.00124 * 1 2 3 25 25 H 1.09004 * 109.46847 * 59.99825 * 1 2 3 26 26 H 0.96698 * 113.99680 * 300.01026 * 4 2 1 27 27 H 1.09000 * 109.46963 * 304.99887 * 5 2 1 28 28 H 1.09002 * 109.47340 * 64.99629 * 5 2 1 29 29 H 1.08998 * 109.47468 * 299.99669 * 6 5 2 30 30 H 1.09003 * 109.47491 * 59.99912 * 6 5 2 31 31 H 1.09000 * 109.47114 * 300.00269 * 7 6 5 32 32 H 1.09003 * 109.46361 * 59.99612 * 7 6 5 33 33 H 1.08003 * 119.90617 * 0.02846 * 10 9 8 34 34 H 1.08004 * 120.09403 * 180.25206 * 11 10 9 35 35 H 0.96996 * 120.00339 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.09591 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.90764 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5647 -0.6134 1.3137 7 6 4.0747 -1.3342 2.5632 8 8 5.4989 -1.2339 2.6231 9 6 6.1142 -1.8252 3.6779 10 6 5.3551 -2.4857 4.6414 11 6 5.9665 -3.0871 5.7026 12 6 7.3680 -3.0295 5.8280 13 6 8.0083 -3.6441 6.9264 14 1 8.9765 -3.2935 7.2524 15 6 7.3887 -4.7070 7.5922 16 7 6.4131 -5.3611 7.0148 17 14 7.9537 -5.1926 9.3051 18 1 9.0644 -4.3036 9.7307 19 1 6.8209 -5.0602 10.2561 20 1 8.4254 -6.6007 9.2901 21 6 8.1275 -2.3551 4.8524 22 6 7.5011 -1.7638 3.7943 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7209 -1.5952 -1.2329 27 1 1.6053 -0.2618 2.1369 28 1 1.7515 -1.7716 1.2055 29 1 3.9994 -1.0729 0.4260 30 1 3.8532 0.4368 1.3574 31 1 3.6401 -0.8744 3.4507 32 1 3.7862 -2.3845 2.5199 33 1 4.2801 -2.5256 4.5458 34 1 5.3770 -3.6023 6.4466 35 1 5.9837 -6.0984 7.4763 36 1 9.2027 -2.3060 4.9416 37 1 8.0819 -1.2459 3.0455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309761807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:35 Heat of formation + Delta-G solvation = -112.727911 kcal Electronic energy + Delta-G solvation = -17401.719065 eV Core-core repulsion = 14528.402145 eV Total energy + Delta-G solvation = -2873.316920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55452 -38.96968 -38.13612 -35.36604 -34.43139 -31.74714 -31.52577 -30.79537 -27.54179 -26.37327 -23.68747 -22.83529 -22.21251 -21.76989 -19.27956 -18.65758 -17.38969 -17.24445 -16.97691 -16.38411 -16.22113 -15.76642 -15.07455 -14.82303 -14.51079 -14.21823 -14.00064 -13.90583 -13.59144 -13.24517 -12.88296 -12.78174 -12.69030 -12.49206 -12.40910 -12.24750 -11.91155 -11.64462 -11.62905 -11.41237 -11.21562 -10.89542 -10.85832 -9.58171 -8.92254 -8.60796 -6.23267 0.92331 1.03198 1.39868 1.50523 1.55237 2.22946 2.57958 2.71568 3.53801 3.69141 3.81815 3.95933 4.04881 4.23941 4.28247 4.33694 4.43390 4.47992 4.59018 4.62232 4.81271 4.90743 4.96419 5.00305 5.04012 5.14536 5.26360 5.30125 5.35489 5.36330 5.52787 5.65815 5.96815 6.05599 6.22836 6.55871 6.79217 6.88342 6.94480 7.09691 8.36380 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.043798 B = 0.003570 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.143995 B = 7840.574735 C = 8294.224650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.094 0.906 4 O -0.583 6.583 5 C -0.142 4.142 6 C -0.105 4.105 7 C 0.060 3.940 8 O -0.340 6.340 9 C -0.004 4.004 10 C -0.176 4.176 11 C -0.155 4.155 12 C 0.054 3.946 13 C -0.499 4.499 14 H 0.076 0.924 15 C 0.033 3.967 16 N -0.831 5.831 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.206 4.206 22 C -0.122 4.122 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.387 0.613 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.111 0.889 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 5.841 -7.822 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.044 3.956 3 H 0.112 0.888 4 O -0.391 6.391 5 C -0.180 4.180 6 C -0.142 4.142 7 C -0.015 4.015 8 O -0.256 6.256 9 C -0.048 4.048 10 C -0.195 4.195 11 C -0.175 4.175 12 C 0.052 3.948 13 C -0.528 4.528 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.458 5.458 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.225 4.225 22 C -0.141 4.141 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.990 6.325 -8.066 15.028 hybrid contribution -0.115 -1.070 1.015 1.480 sum -11.105 5.255 -7.051 14.165 Atomic orbital electron populations 1.22448 0.94914 1.03257 1.03135 1.21925 0.93743 0.96389 0.83526 0.88803 1.86562 1.77795 1.30307 1.44443 1.22209 0.93464 1.02401 0.99877 1.21408 0.96359 1.00730 0.95723 1.22801 0.78949 1.00206 0.99570 1.85795 1.21923 1.73842 1.44012 1.18742 0.92237 1.03127 0.90675 1.20820 0.98820 1.02907 0.96952 1.20918 0.94967 1.02638 0.98975 1.17966 0.92352 0.91838 0.92629 1.19745 1.05249 1.14897 1.12950 0.90577 1.26743 0.93957 0.94534 1.02828 1.69896 1.21137 1.16550 1.38238 0.85146 0.79308 0.78569 0.76586 1.18223 1.18909 1.19156 1.20814 0.98563 1.07018 0.96123 1.19917 0.91468 1.03246 0.99480 0.91490 0.90684 0.91853 0.76371 0.89731 0.90520 0.91455 0.91374 0.92770 0.93249 0.86517 0.87450 0.90234 0.87127 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.53 71.98 0.69 -1.44 16 2 C 0.10 1.64 3.59 30.59 0.11 1.75 16 3 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 4 O -0.58 -10.91 12.88 -148.98 -1.92 -12.82 16 5 C -0.14 -2.46 4.89 30.59 0.15 -2.31 16 6 C -0.10 -2.56 5.48 30.59 0.17 -2.40 16 7 C 0.06 1.90 4.73 71.98 0.34 2.24 16 8 O -0.34 -14.02 10.12 -89.95 -0.91 -14.93 16 9 C 0.00 -0.19 6.71 22.79 0.15 -0.03 16 10 C -0.18 -8.46 8.96 22.11 0.20 -8.26 16 11 C -0.16 -8.36 8.64 22.48 0.19 -8.17 16 12 C 0.05 3.01 5.57 -21.28 -0.12 2.89 16 13 C -0.50 -27.30 9.04 23.40 0.21 -27.09 16 14 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 15 C 0.03 1.69 5.13 85.23 0.44 2.13 16 16 N -0.83 -43.89 10.96 21.82 0.24 -43.65 16 17 Si 0.98 38.49 29.60 68.60 2.03 40.52 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.21 -10.44 9.74 22.49 0.22 -10.22 16 22 C -0.12 -5.81 9.92 22.11 0.22 -5.59 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.39 4.58 9.04 -74.06 -0.67 3.91 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.77 7.82 -2.39 -0.02 1.75 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.65 7.64 -2.39 -0.02 1.64 16 32 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 33 H 0.12 4.91 6.27 -2.91 -0.02 4.89 16 34 H 0.11 5.97 6.16 -2.91 -0.02 5.95 16 35 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 36 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -63.37 310.73 2.79 -60.58 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.38 Total: 26.81 kcal Atomic # 6 Polarization: -59.48 SS G_CDS: 2.97 Total: -56.51 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.24 Total: -43.65 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -2.83 Total: -27.75 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -63.37 2.79 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309761807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.150 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds