Wall clock time and date at job start Mon Mar 30 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 O 1.42900 * 109.46800 * 119.99907 * 2 1 3 5 5 C 1.42897 * 114.00397 * 269.99738 * 4 2 1 6 6 C 1.52996 * 109.47481 * 180.02562 * 5 4 2 7 7 O 1.42897 * 109.47217 * 65.00466 * 6 5 4 8 8 C 1.42900 * 114.00136 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47024 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99727 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00171 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47485 * 89.99602 * 13 11 9 15 15 H 1.48507 * 109.46790 * 209.99777 * 13 11 9 16 16 H 1.48496 * 109.47130 * 329.99078 * 13 11 9 17 17 C 1.50700 * 109.47363 * 240.00091 * 2 1 3 18 18 C 1.38231 * 119.99825 * 279.86689 * 17 2 1 19 19 C 1.38243 * 120.00070 * 180.02562 * 18 17 2 20 20 C 1.38235 * 119.99602 * 0.07188 * 19 18 17 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00292 * 99.99827 * 17 2 1 23 23 H 1.08996 * 109.47169 * 299.99750 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00263 * 1 2 3 25 25 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47350 * 300.00820 * 5 4 2 27 27 H 1.09009 * 109.46869 * 60.00129 * 5 4 2 28 28 H 1.09004 * 109.47238 * 185.00593 * 6 5 4 29 29 H 1.08997 * 109.47003 * 305.00253 * 6 5 4 30 30 H 1.09000 * 109.47024 * 299.99950 * 8 7 6 31 31 H 1.09004 * 109.47293 * 59.99707 * 8 7 6 32 32 H 0.96996 * 119.99963 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.00367 * 0.10906 * 18 17 2 34 34 H 1.08000 * 119.99728 * 180.34119 * 19 18 17 35 35 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.99474 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7090 -0.6406 3.4789 7 8 4.0036 -1.1634 3.1745 8 6 4.5723 -1.9530 4.2210 9 6 5.9292 -2.4505 3.7941 10 1 6.3181 -2.1902 2.8208 11 6 6.6737 -3.2390 4.6457 12 7 6.1999 -3.5564 5.8308 13 14 8.3559 -3.8551 4.1168 14 1 9.3929 -2.8720 4.5211 15 1 8.6317 -5.1613 4.7674 16 1 8.3806 -4.0221 2.6415 17 6 2.0324 -0.7104 -1.2305 18 6 2.0694 -2.0918 -1.2643 19 6 2.5308 -2.7435 -2.3928 20 6 2.9565 -2.0136 -3.4868 21 6 2.9204 -0.6322 -3.4527 22 6 2.4588 0.0194 -2.3243 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9319 0.9513 2.0451 27 1 1.2537 0.6547 2.5589 28 1 2.7722 -0.0055 4.3625 29 1 2.0208 -1.4637 3.6716 30 1 4.6741 -1.3454 5.1202 31 1 3.9227 -2.8033 4.4287 32 1 6.7237 -4.1107 6.4300 33 1 1.7366 -2.6620 -0.4096 34 1 2.5545 -3.8228 -2.4212 35 1 3.3173 -2.5228 -4.3683 36 1 3.2534 -0.0619 -4.3073 37 1 2.4315 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385207019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:20 Heat of formation + Delta-G solvation = -78.387640 kcal Electronic energy + Delta-G solvation = -17682.870796 eV Core-core repulsion = 14811.042982 eV Total energy + Delta-G solvation = -2871.827814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.50810 -37.80593 -36.34506 -32.97599 -32.48376 -30.83266 -29.48524 -28.95097 -26.76532 -23.77410 -22.68230 -22.29215 -21.73342 -20.74578 -17.05547 -16.66138 -16.31818 -15.83273 -15.45936 -14.97637 -14.51100 -14.28497 -14.12367 -14.01826 -13.33232 -13.26781 -12.80061 -12.66523 -12.30837 -12.20622 -11.77244 -11.37611 -11.30761 -10.98854 -10.82486 -10.74128 -10.61875 -10.46935 -9.96495 -9.43143 -9.05248 -8.84042 -8.79061 -8.68110 -8.12707 -6.06940 -4.07939 1.37700 1.48823 3.33373 3.38008 3.44498 3.72085 3.94888 4.38538 4.72894 4.87466 4.92899 5.02549 5.12340 5.17974 5.25545 5.29562 5.42193 5.49494 5.59024 5.62609 5.67832 5.77575 6.00112 6.02635 6.04836 6.12033 6.13885 6.26075 6.49510 6.59673 6.66044 7.05863 7.13496 7.45868 7.48667 7.84432 8.19912 8.62970 9.05904 9.56657 11.04781 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.004918 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.204241 B = 5691.468856 C = 6754.380036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 H 0.066 0.934 4 O -0.362 6.362 5 C 0.068 3.932 6 C 0.064 3.936 7 O -0.388 6.388 8 C 0.194 3.806 9 C -0.512 4.512 10 H 0.066 0.934 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.907 3.093 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.082 4.082 18 C -0.085 4.085 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.114 4.114 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.263 0.737 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 7.345 -14.734 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.084 0.916 4 O -0.281 6.281 5 C -0.008 4.008 6 C -0.014 4.014 7 O -0.308 6.308 8 C 0.120 3.880 9 C -0.550 4.550 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.734 3.266 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.082 4.082 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.132 4.132 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.359 7.073 -14.733 19.902 hybrid contribution 0.725 -0.156 0.205 0.769 sum -10.634 6.916 -14.528 19.287 Atomic orbital electron populations 1.22267 0.95303 1.03048 1.01905 1.20822 0.93258 0.95005 0.84405 0.91622 1.88087 1.86278 1.34495 1.19283 1.22622 0.98336 0.93209 0.86663 1.22247 0.88076 0.96815 0.94249 1.87927 1.29037 1.69788 1.44020 1.20205 0.93371 0.88980 0.85460 1.21066 1.00733 1.30741 1.02472 0.91563 1.24942 0.98784 0.95998 0.94774 1.69963 1.38208 1.37759 1.08013 0.86346 0.83266 0.78044 0.78917 1.20477 1.21076 1.19603 1.19752 0.99701 0.94292 0.94449 1.21066 0.97599 0.94002 0.97645 1.21204 0.99237 1.00039 0.93548 1.21140 1.00091 0.94234 0.98569 1.21033 1.00611 0.94654 0.98082 1.20933 0.99359 0.99516 0.93402 0.92167 0.91785 0.91592 0.92760 0.92837 0.93048 0.93694 0.97814 0.97666 0.92710 0.85344 0.86025 0.86332 0.86239 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.51 37.16 0.35 -1.44 16 2 C 0.12 1.63 2.93 -27.88 -0.08 1.55 16 3 H 0.07 0.78 7.65 -51.93 -0.40 0.39 16 4 O -0.36 -6.19 9.27 -40.08 -0.37 -6.56 16 5 C 0.07 1.08 6.13 37.16 0.23 1.30 16 6 C 0.06 1.24 6.32 37.16 0.23 1.47 16 7 O -0.39 -9.91 10.29 -40.08 -0.41 -10.32 16 8 C 0.19 5.53 5.69 36.00 0.20 5.73 16 9 C -0.51 -15.60 9.43 -34.44 -0.32 -15.92 16 10 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 13 Si 0.91 22.38 29.54 -169.99 -5.02 17.35 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.08 -1.13 4.97 -104.63 -0.52 -1.65 16 18 C -0.09 -1.23 9.36 -39.58 -0.37 -1.60 16 19 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 20 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 21 C -0.13 -1.42 10.05 -39.59 -0.40 -1.81 16 22 C -0.11 -1.38 9.67 -39.58 -0.38 -1.76 16 23 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.05 0.66 7.87 -51.92 -0.41 0.25 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.13 1.94 7.78 -52.49 -0.41 1.53 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.16 8.04 -52.48 -0.42 0.74 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -33.45 319.75 -8.01 -41.46 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.81 Total: -3.69 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.95 Total: -16.35 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.78 Total: -16.88 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.45 -8.01 -41.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385207019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.924 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds