Wall clock time and date at job start Mon Mar 30 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 O 1.42900 * 109.46800 * 119.99907 * 2 1 3 5 5 C 1.42897 * 114.00397 * 269.99738 * 4 2 1 6 6 C 1.52996 * 109.47481 * 180.02562 * 5 4 2 7 7 O 1.42897 * 109.47217 * 65.00466 * 6 5 4 8 8 C 1.42900 * 114.00136 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47024 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99727 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00171 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47485 * 89.99602 * 13 11 9 15 15 H 1.48507 * 109.46790 * 209.99777 * 13 11 9 16 16 H 1.48496 * 109.47130 * 329.99078 * 13 11 9 17 17 C 1.50700 * 109.47363 * 240.00091 * 2 1 3 18 18 C 1.38231 * 119.99825 * 279.86689 * 17 2 1 19 19 C 1.38243 * 120.00070 * 180.02562 * 18 17 2 20 20 C 1.38235 * 119.99602 * 0.07188 * 19 18 17 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00292 * 99.99827 * 17 2 1 23 23 H 1.08996 * 109.47169 * 299.99750 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00263 * 1 2 3 25 25 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47350 * 300.00820 * 5 4 2 27 27 H 1.09009 * 109.46869 * 60.00129 * 5 4 2 28 28 H 1.09004 * 109.47238 * 185.00593 * 6 5 4 29 29 H 1.08997 * 109.47003 * 305.00253 * 6 5 4 30 30 H 1.09000 * 109.47024 * 299.99950 * 8 7 6 31 31 H 1.09004 * 109.47293 * 59.99707 * 8 7 6 32 32 H 0.96996 * 119.99963 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.00367 * 0.10906 * 18 17 2 34 34 H 1.08000 * 119.99728 * 180.34119 * 19 18 17 35 35 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.99474 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7090 -0.6406 3.4789 7 8 4.0036 -1.1634 3.1745 8 6 4.5723 -1.9530 4.2210 9 6 5.9292 -2.4505 3.7941 10 1 6.3181 -2.1902 2.8208 11 6 6.6737 -3.2390 4.6457 12 7 6.1999 -3.5564 5.8308 13 14 8.3559 -3.8551 4.1168 14 1 9.3929 -2.8720 4.5211 15 1 8.6317 -5.1613 4.7674 16 1 8.3806 -4.0221 2.6415 17 6 2.0324 -0.7104 -1.2305 18 6 2.0694 -2.0918 -1.2643 19 6 2.5308 -2.7435 -2.3928 20 6 2.9565 -2.0136 -3.4868 21 6 2.9204 -0.6322 -3.4527 22 6 2.4588 0.0194 -2.3243 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9319 0.9513 2.0451 27 1 1.2537 0.6547 2.5589 28 1 2.7722 -0.0055 4.3625 29 1 2.0208 -1.4637 3.6716 30 1 4.6741 -1.3454 5.1202 31 1 3.9227 -2.8033 4.4287 32 1 6.7237 -4.1107 6.4300 33 1 1.7366 -2.6620 -0.4096 34 1 2.5545 -3.8228 -2.4212 35 1 3.3173 -2.5228 -4.3683 36 1 3.2534 -0.0619 -4.3073 37 1 2.4315 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385207019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:20 Heat of formation + Delta-G solvation = -98.765505 kcal Electronic energy + Delta-G solvation = -17683.754447 eV Core-core repulsion = 14811.042982 eV Total energy + Delta-G solvation = -2872.711465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50219 -39.11823 -38.07005 -34.98874 -33.79317 -31.77598 -30.95483 -29.98870 -28.85613 -24.79139 -24.52013 -23.72638 -23.04187 -21.71979 -18.69121 -18.10537 -17.73210 -17.49497 -16.66692 -16.46747 -16.19791 -15.71871 -15.42155 -15.30145 -14.78040 -14.22488 -14.05814 -13.91807 -13.62923 -13.33941 -13.12287 -13.04146 -12.87827 -12.68353 -12.38334 -12.24663 -11.95540 -11.76885 -11.57302 -11.31635 -10.89981 -10.55962 -10.25896 -9.79500 -9.63577 -8.33975 -6.46416 0.42852 0.52810 1.37922 1.41260 1.53472 2.33617 2.65253 2.95729 2.99475 3.17673 3.76795 3.97973 4.12531 4.16545 4.22686 4.28855 4.31288 4.33689 4.52040 4.57932 4.64002 4.69384 4.72062 4.84856 4.88990 4.89373 5.12504 5.15302 5.17671 5.26201 5.52597 5.57632 5.64215 5.66392 5.94110 6.13168 6.35793 6.52601 6.80501 7.25512 8.78537 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.004918 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.204241 B = 5691.468856 C = 6754.380036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.082 0.918 4 O -0.397 6.397 5 C 0.074 3.926 6 C 0.051 3.949 7 O -0.408 6.408 8 C 0.208 3.792 9 C -0.550 4.550 10 H 0.057 0.943 11 C 0.008 3.992 12 N -0.930 5.930 13 Si 0.983 3.017 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.120 4.120 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.041 0.959 30 H -0.009 1.009 31 H -0.017 1.017 32 H 0.272 0.728 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 8.384 -16.265 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.100 0.900 4 O -0.317 6.317 5 C -0.002 4.002 6 C -0.026 4.026 7 O -0.328 6.328 8 C 0.133 3.867 9 C -0.588 4.588 10 H 0.075 0.925 11 C -0.190 4.190 12 N -0.569 5.569 13 Si 0.805 3.195 14 H -0.189 1.189 15 H -0.196 1.196 16 H -0.192 1.192 17 C -0.101 4.101 18 C -0.133 4.133 19 C -0.154 4.154 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.138 4.138 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.001 0.999 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.821 8.129 -16.265 21.160 hybrid contribution 0.465 -0.453 0.656 0.923 sum -10.356 7.676 -15.609 20.244 Atomic orbital electron populations 1.22210 0.93427 1.02701 1.03436 1.21075 0.94743 0.95270 0.82858 0.90034 1.88047 1.86926 1.36102 1.20638 1.22621 1.00235 0.92117 0.85241 1.22659 0.85308 0.97414 0.97214 1.87875 1.32036 1.69540 1.43348 1.19836 0.92785 0.88335 0.85710 1.21367 1.02178 1.32544 1.02694 0.92481 1.25955 1.03189 0.95406 0.94500 1.70061 1.40039 1.37778 1.08991 0.85191 0.77584 0.78051 0.78633 1.18942 1.19606 1.19221 1.19985 1.00461 0.94164 0.95490 1.21082 0.99573 0.94790 0.97874 1.21426 0.99444 1.00852 0.93709 1.21498 0.99340 0.94756 0.98829 1.21465 0.99370 0.94795 0.98704 1.21266 0.98716 1.00792 0.93018 0.90920 0.89861 0.92897 0.92510 0.88562 0.91206 0.94020 0.99142 0.99909 0.91939 0.87538 0.85123 0.83733 0.83187 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.51 71.98 0.68 -2.52 16 2 C 0.12 3.02 2.93 29.85 0.09 3.11 16 3 H 0.08 1.79 7.65 -2.39 -0.02 1.77 16 4 O -0.40 -13.62 9.27 -144.35 -1.34 -14.96 16 5 C 0.07 2.26 6.13 71.98 0.44 2.70 16 6 C 0.05 1.99 6.32 71.98 0.45 2.44 16 7 O -0.41 -21.48 10.29 -144.35 -1.49 -22.96 16 8 C 0.21 12.32 5.69 71.23 0.41 12.73 16 9 C -0.55 -34.36 9.43 25.60 0.24 -34.12 16 10 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 11 C 0.01 0.48 5.46 84.66 0.46 0.94 16 12 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 13 Si 0.98 45.70 29.54 68.60 2.03 47.73 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 C -0.10 -2.76 4.97 -19.87 -0.10 -2.86 16 18 C -0.11 -3.47 9.36 22.27 0.21 -3.26 16 19 C -0.14 -3.53 10.05 22.27 0.22 -3.30 16 20 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 21 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 22 C -0.12 -2.68 9.67 22.27 0.22 -2.46 16 23 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.69 8.09 -2.38 -0.02 1.67 16 27 H 0.10 2.12 7.87 -2.38 -0.02 2.10 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.11 3.53 7.78 -2.91 -0.02 3.51 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.14 2.39 8.04 -2.91 -0.02 2.36 16 Total: -1.00 -73.56 319.75 4.28 -69.28 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.02 Total: 9.18 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.77 Total: -31.40 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -2.82 Total: -37.93 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.56 4.28 -69.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385207019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.487 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds