Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.42899 * 114.00025 * 90.00268 * 4 2 1 6 6 C 1.53006 * 109.47075 * 179.97438 * 5 4 2 7 7 O 1.42903 * 109.46576 * 65.00209 * 6 5 4 8 8 C 1.42904 * 113.99194 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46349 * 179.97438 * 8 7 6 10 10 H 1.07990 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99344 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00713 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99688 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47212 * 90.00310 * 13 11 9 15 15 H 1.48507 * 109.47086 * 210.00203 * 13 11 9 16 16 H 1.48495 * 109.47141 * 330.00318 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.38236 * 119.99787 * 84.72732 * 17 2 1 19 19 C 1.38241 * 119.99636 * 179.81278 * 18 17 2 20 20 C 1.38234 * 120.00115 * 0.39672 * 19 18 17 21 21 C 1.38240 * 119.99714 * 359.85290 * 20 19 18 22 22 C 1.38228 * 120.00011 * 265.00375 * 17 2 1 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47064 * 299.99806 * 5 4 2 27 27 H 1.09007 * 109.47276 * 60.00167 * 5 4 2 28 28 H 1.09000 * 109.46444 * 185.00060 * 6 5 4 29 29 H 1.08996 * 109.47376 * 305.00185 * 6 5 4 30 30 H 1.08994 * 109.47655 * 299.99595 * 8 7 6 31 31 H 1.09000 * 109.47108 * 60.00634 * 8 7 6 32 32 H 0.96996 * 120.00462 * 179.97438 * 12 11 9 33 33 H 1.07996 * 120.00216 * 359.97438 * 18 17 2 34 34 H 1.08000 * 119.99857 * 180.22806 * 19 18 17 35 35 H 1.07998 * 120.00030 * 179.84064 * 20 19 18 36 36 H 1.08003 * 119.99655 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00508 * 359.97379 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6407 -3.4788 7 8 1.7015 -1.5713 -3.8799 8 6 2.0777 -2.3941 -4.9860 9 6 0.9470 -3.3324 -5.3213 10 1 0.0326 -3.3029 -4.7474 11 6 1.0800 -4.2284 -6.3607 12 7 2.1937 -4.2647 -7.0593 13 14 -0.3218 -5.3909 -6.7769 14 1 -1.2177 -4.7497 -7.7726 15 1 0.2294 -6.6479 -7.3440 16 1 -1.0913 -5.6993 -5.5449 17 6 2.0323 -0.7104 1.2305 18 6 2.1590 -2.0870 1.2305 19 6 2.6234 -2.7382 2.3580 20 6 2.9534 -2.0137 3.4881 21 6 2.8218 -0.6376 3.4897 22 6 2.3610 0.0139 2.3610 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2539 0.6546 -2.5588 27 1 2.9321 0.9513 -2.0450 28 1 2.9413 0.0245 -4.3105 29 1 3.6081 -1.1827 -3.1851 30 1 2.2964 -1.7653 -5.8489 31 1 2.9636 -2.9725 -4.7239 32 1 2.2874 -4.8953 -7.7904 33 1 1.8976 -2.6533 0.3489 34 1 2.7258 -3.8134 2.3568 35 1 3.3138 -2.5228 4.3697 36 1 3.0792 -0.0716 4.3728 37 1 2.2582 1.0891 2.3624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385207020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = -78.784339 kcal Electronic energy + Delta-G solvation = -17602.395593 eV Core-core repulsion = 14730.550577 eV Total energy + Delta-G solvation = -2871.845016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56212 -37.82653 -36.35050 -32.98718 -32.49879 -30.90255 -29.51061 -28.91363 -26.76811 -23.78501 -22.72959 -22.31388 -21.73381 -20.77883 -17.10398 -16.67734 -16.33519 -15.86852 -15.48225 -14.76435 -14.69788 -14.36681 -14.12945 -13.98745 -13.36868 -13.29769 -12.89719 -12.64922 -12.19683 -12.15448 -11.71987 -11.47511 -11.28240 -11.06959 -10.83025 -10.76399 -10.62740 -10.45654 -9.97390 -9.44275 -9.06552 -8.92486 -8.79931 -8.73856 -8.13706 -6.07842 -4.09159 1.29815 1.40558 3.32549 3.37321 3.43348 3.68988 3.88072 4.37403 4.71497 4.84663 4.90690 4.96173 5.10874 5.13662 5.26780 5.28601 5.47038 5.47700 5.59417 5.60451 5.66810 5.82876 5.97729 6.02647 6.03773 6.10481 6.24458 6.27740 6.42085 6.53806 6.60864 6.98757 7.12993 7.45417 7.48283 7.83099 8.18778 8.61693 9.04530 9.55524 11.03845 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027095 B = 0.004092 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.135226 B = 6840.521973 C = 7252.313482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 H 0.064 0.936 4 O -0.363 6.363 5 C 0.068 3.932 6 C 0.064 3.936 7 O -0.388 6.388 8 C 0.194 3.806 9 C -0.513 4.513 10 H 0.066 0.934 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.907 3.093 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.082 4.082 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.116 4.116 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.264 0.736 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 9.565 18.526 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.082 0.918 4 O -0.282 6.282 5 C -0.008 4.008 6 C -0.014 4.014 7 O -0.308 6.308 8 C 0.120 3.880 9 C -0.551 4.551 10 H 0.085 0.915 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.735 3.265 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.134 4.134 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.083 9.250 18.451 20.668 hybrid contribution -0.337 -0.334 -0.492 0.683 sum 0.746 8.917 17.959 20.065 Atomic orbital electron populations 1.22245 0.94929 1.03474 1.01874 1.20814 0.93825 0.94568 0.84183 0.91804 1.88075 1.86269 1.34707 1.19150 1.22624 0.99716 0.92456 0.86006 1.22252 0.92644 0.92737 0.93758 1.87915 1.39088 1.50825 1.52975 1.20207 0.96457 0.88624 0.82736 1.21065 1.01208 1.17575 1.15246 0.91534 1.24947 0.96384 0.97399 0.95789 1.69964 1.25638 1.37354 1.20959 0.86342 0.81668 0.79848 0.78670 1.20488 1.21080 1.19601 1.19819 0.99601 0.94368 0.94447 1.21176 0.97035 0.94108 0.98294 1.21233 0.99418 1.00102 0.93316 1.21150 1.00455 0.94291 0.98299 1.21036 1.00650 0.94685 0.98061 1.20921 0.99882 0.99542 0.93052 0.92016 0.91837 0.91316 0.92706 0.92864 0.93036 0.93686 0.97818 0.97654 0.92690 0.84872 0.85984 0.86346 0.86254 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.51 37.16 0.35 -1.73 16 2 C 0.12 1.64 2.93 -27.88 -0.08 1.56 16 3 H 0.06 0.72 7.70 -51.93 -0.40 0.32 16 4 O -0.36 -6.16 9.11 -40.09 -0.37 -6.53 16 5 C 0.07 1.08 6.13 37.16 0.23 1.30 16 6 C 0.06 1.23 6.32 37.16 0.23 1.47 16 7 O -0.39 -9.77 10.29 -40.09 -0.41 -10.19 16 8 C 0.19 5.48 5.69 36.01 0.20 5.69 16 9 C -0.51 -15.47 9.43 -34.44 -0.32 -15.80 16 10 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 13 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 C -0.08 -1.07 5.00 -104.62 -0.52 -1.60 16 18 C -0.09 -1.23 9.35 -39.58 -0.37 -1.60 16 19 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.27 9.68 -39.59 -0.38 -1.65 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 27 H 0.05 0.67 8.09 -51.92 -0.42 0.25 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.13 2.06 7.64 -52.49 -0.40 1.66 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -32.88 319.56 -8.01 -40.89 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.81 Total: -3.52 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.95 Total: -16.02 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.78 Total: -16.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.88 -8.01 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385207020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.895 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds