Wall clock time and date at job start Mon Mar 30 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46642 * 2 1 4 4 C 1.38163 * 120.02719 * 264.97496 * 3 2 1 5 5 C 1.38243 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.11362 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38708 * 120.02782 * 85.00283 * 3 2 1 9 9 O 1.35898 * 120.05505 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99940 * 179.97438 * 9 8 3 11 11 C 1.53002 * 109.47009 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47271 * 65.00145 * 11 10 9 13 13 C 1.42901 * 114.00080 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47021 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99985 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99875 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46899 * 119.99932 * 18 16 14 21 21 H 1.48501 * 109.46954 * 239.99649 * 18 16 14 22 22 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46871 * 300.00084 * 1 2 3 24 24 H 1.08994 * 109.47183 * 60.00173 * 1 2 3 25 25 H 1.08995 * 109.47138 * 240.00188 * 2 1 3 26 26 H 1.08994 * 109.47183 * 119.99827 * 2 1 3 27 27 H 1.08001 * 119.97035 * 0.03182 * 4 3 2 28 28 H 1.08004 * 119.94085 * 180.02562 * 5 4 3 29 29 H 1.07993 * 119.96940 * 180.27537 * 6 5 4 30 30 H 1.08000 * 120.02369 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47040 * 299.99833 * 10 9 8 32 32 H 1.08995 * 109.47340 * 59.99861 * 10 9 8 33 33 H 1.09005 * 109.47018 * 184.99935 * 11 10 9 34 34 H 1.08996 * 109.47457 * 304.99649 * 11 10 9 35 35 H 1.09001 * 109.46754 * 299.99706 * 13 12 11 36 36 H 1.09000 * 109.46900 * 59.99327 * 13 12 11 37 37 H 0.96993 * 120.00253 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3615 2.0379 -1.1916 5 6 2.8228 3.3411 -1.1922 6 6 2.9564 4.0303 -0.0008 7 6 2.6286 3.4179 1.1931 8 6 2.1650 2.1102 1.1963 9 8 1.8419 1.5055 2.3697 10 6 2.0041 2.2756 3.5626 11 6 1.5930 1.4342 4.7726 12 8 2.4888 0.3294 4.9110 13 6 2.1922 -0.5242 6.0180 14 6 3.1938 -1.6491 6.0674 15 1 3.9786 -1.7061 5.3278 16 6 3.1081 -2.6054 7.0569 17 7 2.1527 -2.5356 7.9579 18 14 4.3501 -3.9993 7.1186 19 1 5.3167 -3.8509 6.0010 20 1 5.0781 -3.9568 8.4123 21 1 3.6425 -5.2987 6.9913 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2583 1.5016 -2.1233 28 1 3.0792 3.8217 -2.1248 29 1 3.3127 5.0498 -0.0044 30 1 2.7328 3.9568 2.1233 31 1 3.0478 2.5729 3.6640 32 1 1.3765 3.1651 3.5090 33 1 1.6318 2.0484 5.6723 34 1 0.5781 1.0633 4.6294 35 1 2.2437 0.0496 6.9433 36 1 1.1896 -0.9356 5.9010 37 1 2.0926 -3.2081 8.6543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385328010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:04 Heat of formation + Delta-G solvation = -77.361140 kcal Electronic energy + Delta-G solvation = -17779.374377 eV Core-core repulsion = 14907.591075 eV Total energy + Delta-G solvation = -2871.783302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16346 -37.64417 -36.37338 -34.05797 -32.76207 -30.50177 -29.88239 -28.65192 -26.89607 -23.89517 -23.29463 -22.31814 -21.38798 -20.74522 -17.99204 -16.50674 -16.17800 -15.93260 -15.76209 -14.96769 -14.72321 -14.25982 -14.20973 -13.86202 -13.67179 -13.30748 -12.91175 -12.69778 -12.10481 -11.80970 -11.74893 -11.62578 -11.34966 -11.04860 -10.85419 -10.77774 -10.70497 -10.61461 -10.42843 -10.03267 -9.10643 -8.87074 -8.82971 -8.20453 -8.00985 -6.11457 -4.12883 1.33712 1.50069 3.29541 3.35965 3.39756 3.42976 3.78571 4.33364 4.70895 4.76672 4.84850 5.01217 5.16134 5.24207 5.25318 5.34745 5.41200 5.48839 5.53953 5.62318 5.71202 5.85757 5.91991 5.97520 6.06990 6.11855 6.19945 6.38457 6.41826 6.49917 6.61277 6.85763 7.06079 7.40430 7.60590 7.79444 8.13433 8.53806 9.00374 9.52023 11.00239 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.004349 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.692624 B = 6437.450226 C = 6765.437614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.114 4.114 4 C -0.083 4.083 5 C -0.165 4.165 6 C -0.087 4.087 7 C -0.212 4.212 8 C 0.140 3.860 9 O -0.294 6.294 10 C 0.065 3.935 11 C 0.063 3.937 12 O -0.389 6.389 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.005 0.995 36 H 0.007 0.993 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 11.739 -15.651 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.183 4.183 6 C -0.105 4.105 7 C -0.231 4.231 8 C 0.094 3.906 9 O -0.207 6.207 10 C -0.011 4.011 11 C -0.014 4.014 12 O -0.309 6.309 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.000 11.403 -15.557 19.392 hybrid contribution 0.431 -0.341 0.504 0.745 sum -1.569 11.062 -15.054 18.747 Atomic orbital electron populations 1.21685 0.94966 1.01602 1.01657 1.20392 0.96081 0.92016 1.03160 1.19318 1.04332 0.97330 0.90483 1.20852 0.97811 0.94773 0.96681 1.20958 1.04166 0.95291 0.97914 1.20875 0.98241 0.99399 0.92017 1.21270 1.07184 0.95114 0.99488 1.18962 0.94268 0.91047 0.86339 1.86233 1.80848 1.41301 1.12316 1.22950 1.01537 0.93753 0.82813 1.22271 0.94706 0.90444 0.94023 1.87927 1.52275 1.37910 1.52794 1.20237 0.96545 0.88283 0.82951 1.21089 1.13230 1.08087 1.12747 0.91464 1.24944 0.96188 0.98198 0.95147 1.69968 1.32454 1.35671 1.15761 0.86285 0.80902 0.81311 0.78040 1.19443 1.20831 1.20798 0.92483 0.92380 0.93273 0.91514 0.89878 0.85755 0.86309 0.86195 0.85553 0.91386 0.91458 0.92244 0.93314 0.97675 0.97536 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 37.16 0.37 -1.38 16 2 C -0.08 -1.06 5.79 -27.88 -0.16 -1.23 16 3 C -0.11 -1.59 5.15 -104.47 -0.54 -2.13 16 4 C -0.08 -0.97 9.68 -39.61 -0.38 -1.35 16 5 C -0.16 -1.79 10.04 -39.56 -0.40 -2.18 16 6 C -0.09 -0.98 10.04 -39.60 -0.40 -1.38 16 7 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 8 C 0.14 2.13 6.66 -39.22 -0.26 1.87 16 9 O -0.29 -5.09 9.24 -24.26 -0.22 -5.31 16 10 C 0.06 0.99 5.12 37.16 0.19 1.18 16 11 C 0.06 1.17 6.32 37.16 0.23 1.40 16 12 O -0.39 -9.59 10.29 -40.08 -0.41 -10.00 16 13 C 0.19 5.38 5.69 36.01 0.20 5.58 16 14 C -0.51 -15.33 9.43 -34.44 -0.32 -15.65 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 26 H 0.08 1.32 7.69 -51.93 -0.40 0.92 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 31 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 32 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -32.35 316.64 -7.79 -40.14 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.72 Total: -3.49 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.92 Total: -16.83 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.64 Total: -15.31 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.35 -7.79 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385328010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.224 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds