Wall clock time and date at job start Mon Mar 30 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46642 * 2 1 4 4 C 1.38163 * 120.02719 * 264.97496 * 3 2 1 5 5 C 1.38243 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.11362 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38708 * 120.02782 * 85.00283 * 3 2 1 9 9 O 1.35898 * 120.05505 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99940 * 179.97438 * 9 8 3 11 11 C 1.53002 * 109.47009 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47271 * 65.00145 * 11 10 9 13 13 C 1.42901 * 114.00080 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47021 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99985 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99875 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46899 * 119.99932 * 18 16 14 21 21 H 1.48501 * 109.46954 * 239.99649 * 18 16 14 22 22 H 1.08999 * 109.46673 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46871 * 300.00084 * 1 2 3 24 24 H 1.08994 * 109.47183 * 60.00173 * 1 2 3 25 25 H 1.08995 * 109.47138 * 240.00188 * 2 1 3 26 26 H 1.08994 * 109.47183 * 119.99827 * 2 1 3 27 27 H 1.08001 * 119.97035 * 0.03182 * 4 3 2 28 28 H 1.08004 * 119.94085 * 180.02562 * 5 4 3 29 29 H 1.07993 * 119.96940 * 180.27537 * 6 5 4 30 30 H 1.08000 * 120.02369 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47040 * 299.99833 * 10 9 8 32 32 H 1.08995 * 109.47340 * 59.99861 * 10 9 8 33 33 H 1.09005 * 109.47018 * 184.99935 * 11 10 9 34 34 H 1.08996 * 109.47457 * 304.99649 * 11 10 9 35 35 H 1.09001 * 109.46754 * 299.99706 * 13 12 11 36 36 H 1.09000 * 109.46900 * 59.99327 * 13 12 11 37 37 H 0.96993 * 120.00253 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3615 2.0379 -1.1916 5 6 2.8228 3.3411 -1.1922 6 6 2.9564 4.0303 -0.0008 7 6 2.6286 3.4179 1.1931 8 6 2.1650 2.1102 1.1963 9 8 1.8419 1.5055 2.3697 10 6 2.0041 2.2756 3.5626 11 6 1.5930 1.4342 4.7726 12 8 2.4888 0.3294 4.9110 13 6 2.1922 -0.5242 6.0180 14 6 3.1938 -1.6491 6.0674 15 1 3.9786 -1.7061 5.3278 16 6 3.1081 -2.6054 7.0569 17 7 2.1527 -2.5356 7.9579 18 14 4.3501 -3.9993 7.1186 19 1 5.3167 -3.8509 6.0010 20 1 5.0781 -3.9568 8.4123 21 1 3.6425 -5.2987 6.9913 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2583 1.5016 -2.1233 28 1 3.0792 3.8217 -2.1248 29 1 3.3127 5.0498 -0.0044 30 1 2.7328 3.9568 2.1233 31 1 3.0478 2.5729 3.6640 32 1 1.3765 3.1651 3.5090 33 1 1.6318 2.0484 5.6723 34 1 0.5781 1.0633 4.6294 35 1 2.2437 0.0496 6.9433 36 1 1.1896 -0.9356 5.9010 37 1 2.0926 -3.2081 8.6543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385328010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:04 Heat of formation + Delta-G solvation = -96.525100 kcal Electronic energy + Delta-G solvation = -17780.205389 eV Core-core repulsion = 14907.591075 eV Total energy + Delta-G solvation = -2872.614314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20870 -38.98396 -37.98182 -35.06653 -34.94166 -31.85062 -30.91063 -29.81889 -28.91849 -24.96319 -24.64885 -24.31714 -22.50271 -21.77567 -19.07082 -18.68705 -17.75396 -17.12007 -16.86167 -16.59674 -16.23617 -15.95826 -15.40271 -15.25534 -14.67366 -14.59220 -14.13217 -13.97776 -13.66422 -13.26761 -13.06820 -12.89373 -12.73787 -12.70332 -12.43641 -12.34236 -12.00901 -11.89308 -11.72943 -11.48323 -11.29720 -10.92274 -10.29807 -9.75108 -9.02558 -8.34917 -6.47340 0.41627 0.54683 1.38296 1.39859 1.54693 2.28006 2.32893 2.85485 2.98865 3.07519 3.80627 3.88082 3.99333 4.09843 4.20513 4.29133 4.35128 4.44017 4.46993 4.52649 4.57963 4.65620 4.68996 4.82193 4.85560 4.99956 5.11421 5.13936 5.20984 5.37643 5.48224 5.51815 5.58506 5.64851 5.92327 5.95459 6.46604 6.55000 6.77487 7.24570 8.77713 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.004349 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.692624 B = 6437.450226 C = 6765.437614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.089 4.089 7 C -0.220 4.220 8 C 0.106 3.894 9 O -0.327 6.327 10 C 0.071 3.929 11 C 0.052 3.948 12 O -0.409 6.409 13 C 0.208 3.792 14 C -0.550 4.550 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.270 1.270 22 H 0.062 0.938 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.046 0.954 35 H -0.007 1.007 36 H -0.014 1.014 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 12.543 -17.284 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.136 4.136 4 C -0.103 4.103 5 C -0.178 4.178 6 C -0.107 4.107 7 C -0.239 4.239 8 C 0.060 3.940 9 O -0.241 6.241 10 C -0.004 4.004 11 C -0.024 4.024 12 O -0.329 6.329 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.195 1.195 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.011 0.989 36 H 0.003 0.997 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.137 12.234 -17.202 21.139 hybrid contribution 0.116 -0.483 0.929 1.053 sum -1.021 11.751 -16.273 20.098 Atomic orbital electron populations 1.21642 0.94302 1.01924 1.01517 1.20359 0.96728 0.92222 1.02254 1.19559 1.05313 0.97501 0.91209 1.21180 0.96996 0.95433 0.96656 1.21398 1.02406 0.94830 0.99143 1.21283 0.97258 1.00705 0.91429 1.21502 1.07013 0.94381 1.00968 1.19305 0.96417 0.92389 0.85854 1.86170 1.81807 1.42731 1.13393 1.22930 1.02389 0.93777 0.81301 1.22646 0.93720 0.89280 0.96782 1.87875 1.54061 1.39424 1.51544 1.19864 0.95010 0.88372 0.83439 1.21396 1.13993 1.09845 1.13562 0.92409 1.25940 0.98193 1.00706 0.94161 1.70062 1.33839 1.36778 1.16157 0.85144 0.78148 0.77599 0.78564 1.19090 1.19306 1.19517 0.91941 0.94468 0.91321 0.89459 0.93593 0.83290 0.83124 0.83271 0.84470 0.91214 0.87672 0.90136 0.93530 0.98918 0.99667 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.90 71.98 0.71 -2.68 16 2 C -0.08 -2.15 5.79 29.85 0.17 -1.98 16 3 C -0.14 -3.72 5.15 -19.77 -0.10 -3.83 16 4 C -0.08 -1.79 9.68 22.25 0.22 -1.57 16 5 C -0.16 -2.92 10.04 22.28 0.22 -2.70 16 6 C -0.09 -1.74 10.04 22.25 0.22 -1.51 16 7 C -0.22 -5.42 9.04 22.36 0.20 -5.21 16 8 C 0.11 3.22 6.66 22.50 0.15 3.37 16 9 O -0.33 -11.72 9.24 -87.77 -0.81 -12.53 16 10 C 0.07 2.18 5.12 71.98 0.37 2.55 16 11 C 0.05 1.99 6.32 71.98 0.45 2.45 16 12 O -0.41 -21.00 10.29 -144.35 -1.49 -22.48 16 13 C 0.21 12.05 5.69 71.24 0.41 12.45 16 14 C -0.55 -33.85 9.43 25.60 0.24 -33.61 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 18 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 26 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 27 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.14 2.92 6.30 -2.91 -0.02 2.90 16 31 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 32 H 0.11 2.40 7.66 -2.39 -0.02 2.38 16 33 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.75 316.64 4.77 -66.98 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.03 Total: 8.27 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 3.73 Total: -31.30 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.30 Total: -35.01 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.75 4.77 -66.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385328010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.548 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds