Wall clock time and date at job start Mon Mar 30 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00288 * 2 1 4 4 C 1.38792 * 120.02181 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05460 * 179.97438 * 4 3 2 6 6 C 1.38197 * 120.10483 * 359.74469 * 5 4 3 7 7 C 1.38759 * 120.05434 * 0.50840 * 6 5 4 8 8 O 1.35897 * 120.02233 * 179.77041 * 7 6 5 9 9 C 1.42898 * 117.00481 * 359.71967 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00346 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46909 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.47155 * 209.99623 * 17 15 13 20 20 H 1.48495 * 109.46964 * 329.99741 * 17 15 13 21 21 C 1.38611 * 120.02944 * 180.02562 * 3 2 1 22 22 H 1.08992 * 109.47022 * 60.00048 * 1 2 3 23 23 H 1.09006 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47243 * 299.99704 * 1 2 3 25 25 H 1.08001 * 119.97914 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.94783 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.97366 * 180.25270 * 6 5 4 28 28 H 1.09002 * 109.47259 * 300.00417 * 9 8 7 29 29 H 1.09001 * 109.47074 * 60.00439 * 9 8 7 30 30 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 31 31 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 32 32 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 33 33 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 34 34 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 35 35 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 36 36 H 0.96993 * 120.00442 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.05552 * 0.04226 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6821 0.0064 7 6 4.0567 2.5209 0.0006 8 8 5.4136 2.5960 0.0011 9 6 5.9911 3.9031 0.0016 10 6 7.5166 3.7867 0.0015 11 6 8.1349 5.1861 0.0027 12 6 9.6605 5.0697 0.0032 13 6 10.2695 6.4481 0.0050 14 1 9.6322 7.3200 0.0053 15 6 11.6403 6.5962 0.0053 16 7 12.4164 5.5345 0.0044 17 14 12.3952 8.3049 0.0067 18 1 12.5951 8.7565 1.4072 19 1 13.7044 8.2682 -0.6931 20 1 11.4863 9.2482 -0.6926 21 6 3.4302 1.2840 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2121 2.3187 0.0014 26 1 1.3277 4.5114 0.0011 27 1 3.7847 4.6457 0.0109 28 1 5.6682 4.4433 -0.8884 29 1 5.6676 4.4429 0.8916 30 1 7.8398 3.2463 0.8912 31 1 7.8398 3.2470 -0.8887 32 1 7.8117 5.7268 -0.8869 33 1 7.8118 5.7253 0.8931 34 1 9.9833 4.5290 0.8930 35 1 9.9841 4.5303 -0.8870 36 1 13.3807 5.6386 0.0050 37 1 4.0197 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385356086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:12 Heat of formation + Delta-G solvation = -91.986776 kcal Electronic energy + Delta-G solvation = -17006.555534 eV Core-core repulsion = 14134.138017 eV Total energy + Delta-G solvation = -2872.417517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41097 -40.07614 -37.58372 -36.41566 -34.41691 -32.05172 -30.86715 -30.06068 -28.16758 -26.78707 -24.23338 -23.53086 -22.29509 -21.78008 -19.66847 -18.45050 -17.55001 -17.32760 -17.14696 -16.96624 -16.62972 -16.50178 -15.64706 -15.55559 -14.60471 -14.50237 -14.15344 -13.87135 -13.65316 -13.33019 -13.10986 -13.01129 -12.72660 -12.64555 -12.36893 -12.13924 -12.09131 -11.70726 -11.63943 -11.37678 -11.34531 -11.13268 -10.55310 -9.53690 -9.11852 -8.19684 -6.31216 0.36336 0.41370 1.40765 1.42436 1.53495 1.89424 2.41421 2.65618 2.74410 3.13511 3.79454 3.97253 3.97328 4.09300 4.13017 4.20427 4.35020 4.39411 4.42544 4.53507 4.53987 4.57381 4.75140 4.79665 4.91002 5.10061 5.22742 5.23158 5.24175 5.31541 5.45434 5.52987 5.55993 5.74689 5.85979 6.24132 6.35521 6.46529 6.86534 7.38257 8.92408 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.072150 B = 0.002807 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.984772 B = 9972.275525 C =10323.907262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.156 3.844 4 C -0.245 4.245 5 C -0.038 4.038 6 C -0.254 4.254 7 C 0.152 3.848 8 O -0.333 6.333 9 C 0.068 3.932 10 C -0.111 4.111 11 C -0.093 4.093 12 C 0.021 3.979 13 C -0.543 4.543 14 H 0.064 0.936 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.217 4.217 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.786 -6.004 -0.006 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.110 3.890 4 C -0.264 4.264 5 C -0.056 4.056 6 C -0.272 4.272 7 C 0.106 3.894 8 O -0.247 6.247 9 C -0.006 4.006 10 C -0.148 4.148 11 C -0.130 4.130 12 C -0.016 4.016 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.237 4.237 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.087 0.913 25 H 0.175 0.825 26 H 0.177 0.823 27 H 0.160 0.840 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.392 -6.406 -0.010 27.158 hybrid contribution 0.842 0.683 0.009 1.084 sum -25.550 -5.723 -0.002 26.183 Atomic orbital electron populations 1.23402 0.75872 1.05721 1.02630 1.86040 1.23942 1.26667 1.88322 1.18684 0.90999 0.85258 0.94036 1.21452 1.01382 0.91476 1.12083 1.21112 0.93240 0.98402 0.92831 1.21476 0.95771 0.97615 1.12387 1.18849 0.82449 0.94030 0.94024 1.86035 1.17708 1.32803 1.88146 1.22938 0.93234 0.81780 1.02642 1.21501 0.92283 0.98514 1.02550 1.21339 0.95577 0.94646 1.01463 1.19031 0.92103 0.95666 0.94848 1.21731 0.92168 0.93813 1.50386 0.91776 1.26046 0.98130 1.01256 0.94789 1.70106 1.04516 1.31200 1.51768 0.85409 0.77678 0.79227 0.78506 1.19742 1.20891 1.18506 1.19567 0.92541 0.96703 1.14840 0.91316 0.86318 0.91309 0.82518 0.82290 0.84034 0.90558 0.90544 0.92097 0.92090 0.92096 0.92083 0.99113 0.99102 0.92796 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.87 10.49 -92.39 -0.97 -7.84 16 3 C 0.16 3.54 6.68 22.49 0.15 3.69 16 4 C -0.25 -4.31 9.04 22.38 0.20 -4.11 16 5 C -0.04 -0.67 10.04 22.24 0.22 -0.45 16 6 C -0.25 -5.71 9.04 22.38 0.20 -5.51 16 7 C 0.15 4.23 6.68 22.49 0.15 4.38 16 8 O -0.33 -10.39 10.13 -92.39 -0.94 -11.33 16 9 C 0.07 1.93 4.74 71.98 0.34 2.28 16 10 C -0.11 -3.84 5.58 30.59 0.17 -3.67 16 11 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 12 C 0.02 1.10 4.97 29.85 0.15 1.25 16 13 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 16 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 17 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 C -0.22 -5.90 9.93 22.46 0.22 -5.67 16 22 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 23 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 25 H 0.16 1.72 6.29 -2.91 -0.02 1.70 16 26 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 27 H 0.14 2.81 6.29 -2.91 -0.02 2.79 16 28 H 0.08 1.93 7.67 -2.39 -0.02 1.91 16 29 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -69.36 313.39 5.22 -64.14 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.03 Total: 6.89 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.78 Total: -40.71 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.28 Total: -57.58 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.91 Total: -19.17 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.36 5.22 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385356086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.847 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds