Wall clock time and date at job start Mon Mar 30 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46920 * 2 1 4 4 C 1.35967 * 117.00080 * 180.02562 * 3 2 1 5 5 C 1.37822 * 120.01869 * 359.72798 * 4 3 2 6 6 C 1.40786 * 119.64372 * 180.31876 * 5 4 3 7 7 C 1.41206 * 120.15972 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99428 * 335.13034 * 7 6 5 9 9 C 1.39866 * 120.00259 * 155.13054 * 7 6 5 10 10 N 1.30888 * 120.00165 * 343.52044 * 9 7 6 11 11 Si 1.86796 * 120.00137 * 163.52468 * 9 7 6 12 12 H 1.48498 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47453 * 119.99820 * 11 9 7 14 14 H 1.48503 * 109.47252 * 239.99745 * 11 9 7 15 15 C 1.40851 * 119.68960 * 359.93506 * 6 5 4 16 16 C 1.36461 * 120.02200 * 0.04224 * 15 6 5 17 17 C 1.39154 * 120.36616 * 0.02562 * 16 15 6 18 18 O 1.35736 * 119.84041 * 179.97438 * 17 16 15 19 19 C 1.42902 * 117.00065 * 354.67286 * 18 17 16 20 20 C 1.53000 * 109.47288 * 85.70972 * 19 18 17 21 21 C 1.53003 * 109.47266 * 205.70887 * 19 18 17 22 22 H 1.09001 * 109.47014 * 299.99248 * 1 2 3 23 23 H 1.08997 * 109.48016 * 59.99365 * 1 2 3 24 24 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47014 * 240.00752 * 2 1 3 26 26 H 1.08993 * 109.47557 * 120.00769 * 2 1 3 27 27 H 1.07998 * 120.17211 * 0.25156 * 5 4 3 28 28 H 0.96994 * 120.00714 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.98688 * 180.02562 * 15 6 5 30 30 H 1.08010 * 119.81578 * 179.97438 * 16 15 6 31 31 H 1.09005 * 109.47273 * 325.70478 * 19 18 17 32 32 H 1.08997 * 109.47355 * 180.02562 * 20 19 18 33 33 H 1.08999 * 109.46974 * 300.00044 * 20 19 18 34 34 H 1.09001 * 109.46943 * 59.99822 * 20 19 18 35 35 H 1.09003 * 109.47111 * 59.99439 * 21 19 18 36 36 H 1.08992 * 109.47360 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.46640 * 299.99978 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1942 0.4328 0.0046 6 6 5.5886 0.6265 0.0108 7 6 6.4593 -0.4852 0.0167 8 1 6.1222 -1.4329 0.4100 9 6 7.7580 -0.3590 -0.4869 10 7 8.0696 0.6609 -1.2457 11 14 9.0480 -1.6462 -0.0765 12 1 8.4471 -2.6898 0.7924 13 1 9.5418 -2.2697 -1.3305 14 1 10.1810 -1.0022 0.6355 15 6 6.1113 1.9345 0.0103 16 6 5.2675 3.0069 0.0047 17 6 3.8890 2.8174 0.0000 18 8 3.0595 3.8918 -0.0050 19 6 3.6661 5.1802 0.1130 20 6 4.0909 5.6728 -1.2718 21 6 2.6618 6.1633 0.7180 22 1 -0.3633 0.5137 0.8901 23 1 -0.3635 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.7848 -0.5665 0.0050 28 1 8.9703 0.7486 -1.5946 29 1 7.1802 2.0886 0.0146 30 1 5.6719 4.0084 0.0048 31 1 4.5416 5.1119 0.7588 32 1 4.5540 6.6554 -1.1817 33 1 4.8064 4.9725 -1.7028 34 1 3.2153 5.7412 -1.9175 35 1 2.3590 5.8124 1.7046 36 1 3.1242 7.1461 0.8076 37 1 1.7862 6.2316 0.0722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390049586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:41 Heat of formation + Delta-G solvation = -70.970812 kcal Electronic energy + Delta-G solvation = -18431.132224 eV Core-core repulsion = 15559.626027 eV Total energy + Delta-G solvation = -2871.506197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27719 -37.80591 -36.08152 -33.42643 -32.27991 -31.12661 -29.42997 -27.97117 -26.91835 -25.04814 -23.09758 -21.68985 -20.85423 -19.52651 -17.99267 -17.01514 -15.78276 -15.42225 -15.34566 -14.71612 -14.55041 -13.72743 -13.60841 -13.37325 -12.72248 -12.58631 -12.35626 -12.19487 -12.00735 -11.88162 -11.79133 -11.52000 -11.23058 -11.14415 -10.90533 -10.74585 -10.50254 -10.36638 -10.01639 -9.85056 -9.66823 -9.47375 -8.95718 -7.40311 -6.76233 -6.63357 -4.30024 2.73191 2.95967 3.06735 3.11878 3.20798 3.92198 4.14139 4.24367 4.59132 5.25466 5.37989 5.38653 5.49631 5.55762 5.64399 5.72695 5.81261 5.89876 6.00008 6.05215 6.14869 6.20180 6.20192 6.30115 6.37799 6.59259 6.69679 6.80251 6.86315 7.03507 7.23862 7.37918 7.89588 7.90551 8.11391 8.28349 8.47954 8.71787 8.87706 9.05336 10.18548 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.007157 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.616788 B = 3911.475241 C = 5274.605010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.321 6.321 4 C 0.123 3.877 5 C -0.281 4.281 6 C 0.115 3.885 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.796 5.796 11 Si 0.908 3.092 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.272 1.272 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.027 4.027 18 O -0.313 6.313 19 C 0.080 3.920 20 C -0.176 4.176 21 C -0.144 4.144 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.279 0.721 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 3.823 1.751 7.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.236 6.236 4 C 0.078 3.922 5 C -0.301 4.301 6 C 0.112 3.888 7 C -0.490 4.490 8 H 0.095 0.905 9 C -0.142 4.142 10 N -0.422 5.422 11 Si 0.733 3.267 12 H -0.184 1.184 13 H -0.200 1.200 14 H -0.197 1.197 15 C -0.176 4.176 16 C -0.166 4.166 17 C -0.070 4.070 18 O -0.230 6.230 19 C 0.023 3.977 20 C -0.233 4.233 21 C -0.201 4.201 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.008 4.052 1.592 7.419 hybrid contribution 1.092 -0.722 -0.003 1.309 sum -4.916 3.330 1.589 6.147 Atomic orbital electron populations 1.21732 0.94083 1.01781 1.02866 1.22504 0.94436 0.83848 1.00918 1.86001 1.20454 1.27061 1.90048 1.17950 0.80978 0.91350 1.01874 1.20875 0.94081 0.95185 1.19960 1.17368 0.90269 0.93101 0.88054 1.19482 0.96043 0.97450 1.36004 0.90493 1.25885 0.99377 0.96321 0.92611 1.69851 1.20910 1.28364 1.23081 0.86267 0.80236 0.81053 0.79190 1.18447 1.20021 1.19728 1.20931 0.99431 0.91423 1.05787 1.20467 0.91253 0.98706 1.06195 1.17747 0.88451 0.83842 1.17001 1.85959 1.34361 1.12014 1.90619 1.22079 0.96147 0.83304 0.96159 1.22344 1.02076 1.00975 0.97950 1.21802 0.99486 0.97585 1.01257 0.92064 0.92038 0.91257 0.92805 0.92889 0.87576 0.90976 0.85861 0.87764 0.91807 0.92297 0.91625 0.92222 0.92167 0.91603 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.62 16 2 C 0.06 1.04 5.46 37.16 0.20 1.24 16 3 O -0.32 -7.18 9.92 -34.17 -0.34 -7.51 16 4 C 0.12 3.02 6.70 -39.14 -0.26 2.76 16 5 C -0.28 -7.06 8.78 -38.77 -0.34 -7.40 16 6 C 0.11 3.08 5.58 -106.82 -0.60 2.48 16 7 C -0.46 -12.17 9.04 -37.85 -0.34 -12.51 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 10 N -0.80 -20.46 10.89 55.54 0.60 -19.85 16 11 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 12 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 13 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 C -0.16 -4.07 8.63 -39.23 -0.34 -4.41 16 16 C -0.15 -3.51 8.20 -39.88 -0.33 -3.84 16 17 C -0.03 -0.65 6.65 -38.65 -0.26 -0.90 16 18 O -0.31 -6.92 9.57 -33.45 -0.32 -7.24 16 19 C 0.08 1.39 2.84 -26.73 -0.08 1.31 16 20 C -0.18 -2.76 9.19 37.16 0.34 -2.42 16 21 C -0.14 -1.98 9.56 37.16 0.36 -1.63 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.94 7.67 -51.93 -0.40 0.54 16 26 H 0.05 0.91 7.65 -51.93 -0.40 0.51 16 27 H 0.11 2.48 6.29 -52.49 -0.33 2.15 16 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.12 3.28 6.11 -52.49 -0.32 2.96 16 30 H 0.10 2.21 5.42 -52.48 -0.28 1.92 16 31 H 0.06 1.11 6.24 -51.93 -0.32 0.79 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.16 6.99 -51.93 -0.36 0.79 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -29.10 305.04 -7.18 -36.28 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.35 Total: 5.36 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -1.35 Total: -25.15 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.60 Total: -19.85 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.66 Total: -14.75 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.10 -7.18 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390049586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.687 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds