Wall clock time and date at job start Mon Mar 30 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46920 * 2 1 4 4 C 1.35967 * 117.00080 * 180.02562 * 3 2 1 5 5 C 1.37822 * 120.01869 * 359.72798 * 4 3 2 6 6 C 1.40786 * 119.64372 * 180.31876 * 5 4 3 7 7 C 1.41206 * 120.15972 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99428 * 335.13034 * 7 6 5 9 9 C 1.39866 * 120.00259 * 155.13054 * 7 6 5 10 10 N 1.30888 * 120.00165 * 343.52044 * 9 7 6 11 11 Si 1.86796 * 120.00137 * 163.52468 * 9 7 6 12 12 H 1.48498 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47453 * 119.99820 * 11 9 7 14 14 H 1.48503 * 109.47252 * 239.99745 * 11 9 7 15 15 C 1.40851 * 119.68960 * 359.93506 * 6 5 4 16 16 C 1.36461 * 120.02200 * 0.04224 * 15 6 5 17 17 C 1.39154 * 120.36616 * 0.02562 * 16 15 6 18 18 O 1.35736 * 119.84041 * 179.97438 * 17 16 15 19 19 C 1.42902 * 117.00065 * 354.67286 * 18 17 16 20 20 C 1.53000 * 109.47288 * 85.70972 * 19 18 17 21 21 C 1.53003 * 109.47266 * 205.70887 * 19 18 17 22 22 H 1.09001 * 109.47014 * 299.99248 * 1 2 3 23 23 H 1.08997 * 109.48016 * 59.99365 * 1 2 3 24 24 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47014 * 240.00752 * 2 1 3 26 26 H 1.08993 * 109.47557 * 120.00769 * 2 1 3 27 27 H 1.07998 * 120.17211 * 0.25156 * 5 4 3 28 28 H 0.96994 * 120.00714 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.98688 * 180.02562 * 15 6 5 30 30 H 1.08010 * 119.81578 * 179.97438 * 16 15 6 31 31 H 1.09005 * 109.47273 * 325.70478 * 19 18 17 32 32 H 1.08997 * 109.47355 * 180.02562 * 20 19 18 33 33 H 1.08999 * 109.46974 * 300.00044 * 20 19 18 34 34 H 1.09001 * 109.46943 * 59.99822 * 20 19 18 35 35 H 1.09003 * 109.47111 * 59.99439 * 21 19 18 36 36 H 1.08992 * 109.47360 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.46640 * 299.99978 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1942 0.4328 0.0046 6 6 5.5886 0.6265 0.0108 7 6 6.4593 -0.4852 0.0167 8 1 6.1222 -1.4329 0.4100 9 6 7.7580 -0.3590 -0.4869 10 7 8.0696 0.6609 -1.2457 11 14 9.0480 -1.6462 -0.0765 12 1 8.4471 -2.6898 0.7924 13 1 9.5418 -2.2697 -1.3305 14 1 10.1810 -1.0022 0.6355 15 6 6.1113 1.9345 0.0103 16 6 5.2675 3.0069 0.0047 17 6 3.8890 2.8174 0.0000 18 8 3.0595 3.8918 -0.0050 19 6 3.6661 5.1802 0.1130 20 6 4.0909 5.6728 -1.2718 21 6 2.6618 6.1633 0.7180 22 1 -0.3633 0.5137 0.8901 23 1 -0.3635 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.7848 -0.5665 0.0050 28 1 8.9703 0.7486 -1.5946 29 1 7.1802 2.0886 0.0146 30 1 5.6719 4.0084 0.0048 31 1 4.5416 5.1119 0.7588 32 1 4.5540 6.6554 -1.1817 33 1 4.8064 4.9725 -1.7028 34 1 3.2153 5.7412 -1.9175 35 1 2.3590 5.8124 1.7046 36 1 3.1242 7.1461 0.8076 37 1 1.7862 6.2316 0.0722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390049586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:40 Heat of formation + Delta-G solvation = -86.527803 kcal Electronic energy + Delta-G solvation = -18431.806826 eV Core-core repulsion = 15559.626027 eV Total energy + Delta-G solvation = -2872.180798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.03777 -39.43649 -37.90532 -35.21696 -33.78071 -32.48393 -31.33734 -29.80904 -28.12318 -26.89426 -24.66208 -23.17166 -22.70620 -21.12995 -19.81982 -18.74408 -17.56137 -17.17303 -16.89952 -16.46135 -16.01649 -15.38478 -15.23058 -15.04943 -14.23215 -14.10226 -13.81507 -13.60056 -13.35066 -13.30163 -13.18799 -12.90812 -12.84483 -12.72344 -12.48016 -12.31614 -12.10910 -11.93118 -11.56596 -11.49336 -11.41256 -11.25907 -10.81013 -9.32419 -8.64100 -8.52477 -6.28020 0.87407 1.04822 1.39490 1.50588 1.54753 2.21355 2.54695 2.68199 2.71052 3.64999 3.99042 4.10338 4.11745 4.16891 4.25800 4.36445 4.42713 4.60220 4.73641 4.76886 4.83141 4.90270 4.92801 4.95892 4.98193 5.01272 5.13199 5.26208 5.26440 5.32826 5.34697 5.48853 5.94259 5.97240 6.16323 6.50320 6.57335 6.81612 6.91829 7.20627 8.33818 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.007157 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.616788 B = 3911.475241 C = 5274.605010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 O -0.332 6.332 4 C 0.112 3.888 5 C -0.290 4.290 6 C 0.085 3.915 7 C -0.494 4.494 8 H 0.076 0.924 9 C 0.035 3.965 10 N -0.826 5.826 11 Si 0.984 3.016 12 H -0.258 1.258 13 H -0.266 1.266 14 H -0.263 1.263 15 C -0.179 4.179 16 C -0.143 4.143 17 C -0.030 4.030 18 O -0.328 6.328 19 C 0.065 3.935 20 C -0.171 4.171 21 C -0.137 4.137 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.289 0.711 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 4.241 1.992 7.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 O -0.247 6.247 4 C 0.067 3.933 5 C -0.311 4.311 6 C 0.083 3.917 7 C -0.523 4.523 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.452 5.452 11 Si 0.805 3.195 12 H -0.182 1.182 13 H -0.191 1.191 14 H -0.188 1.188 15 C -0.199 4.199 16 C -0.162 4.162 17 C -0.074 4.074 18 O -0.245 6.245 19 C 0.009 3.991 20 C -0.228 4.228 21 C -0.194 4.194 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.411 4.487 1.832 8.037 hybrid contribution 1.088 -0.758 -0.098 1.330 sum -5.322 3.729 1.734 6.726 Atomic orbital electron populations 1.21746 0.90603 1.04051 1.03101 1.22883 0.97148 0.81836 1.00900 1.85992 1.19054 1.29939 1.89736 1.18168 0.82076 0.91597 1.01419 1.21014 0.93792 0.96018 1.20231 1.17733 0.91246 0.93810 0.88958 1.19722 0.97521 0.97481 1.37574 0.90592 1.26752 1.00879 0.98578 0.91729 1.69898 1.21906 1.29998 1.23422 0.85125 0.77135 0.78095 0.79136 1.18203 1.19079 1.18799 1.20899 0.99149 0.92010 1.07806 1.20647 0.91193 0.99255 1.05070 1.17939 0.88771 0.84776 1.15917 1.85944 1.34905 1.13169 1.90478 1.22537 0.97235 0.81920 0.97391 1.22305 1.01732 1.02039 0.96721 1.21809 0.98889 0.97994 1.00694 0.91691 0.91905 0.87946 0.93055 0.92686 0.86710 0.90080 0.87032 0.85533 0.92118 0.88803 0.94182 0.91945 0.92479 0.88184 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 10.28 71.98 0.74 -2.75 16 2 C 0.05 1.65 5.46 71.98 0.39 2.05 16 3 O -0.33 -14.92 9.92 -79.28 -0.79 -15.70 16 4 C 0.11 5.63 6.70 22.55 0.15 5.78 16 5 C -0.29 -15.05 8.78 22.79 0.20 -14.85 16 6 C 0.08 4.73 5.58 -21.29 -0.12 4.61 16 7 C -0.49 -26.86 9.04 23.39 0.21 -26.65 16 8 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.04 1.77 5.16 85.23 0.44 2.21 16 10 N -0.83 -43.20 10.89 21.81 0.24 -42.96 16 11 Si 0.98 38.05 29.59 68.60 2.03 40.08 16 12 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 13 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 15 C -0.18 -9.66 8.63 22.49 0.19 -9.46 16 16 C -0.14 -6.95 8.20 22.07 0.18 -6.77 16 17 C -0.03 -1.46 6.65 22.87 0.15 -1.31 16 18 O -0.33 -14.39 9.57 -76.69 -0.73 -15.13 16 19 C 0.07 2.17 2.84 30.60 0.09 2.26 16 20 C -0.17 -5.07 9.19 71.98 0.66 -4.41 16 21 C -0.14 -3.42 9.56 71.98 0.69 -2.73 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.80 7.67 -2.39 -0.02 1.78 16 26 H 0.05 1.88 7.65 -2.39 -0.02 1.86 16 27 H 0.12 5.53 6.29 -2.91 -0.02 5.51 16 28 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 29 H 0.11 6.18 6.11 -2.91 -0.02 6.16 16 30 H 0.13 5.40 5.42 -2.91 -0.02 5.38 16 31 H 0.06 2.04 6.24 -2.38 -0.01 2.03 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.38 6.99 -2.39 -0.02 1.36 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -64.27 305.04 5.78 -58.49 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 1.05 Total: 27.24 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.98 Total: -52.02 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.24 Total: -42.96 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.52 Total: -30.83 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -64.27 5.78 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390049586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.035 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds