Wall clock time and date at job start Mon Mar 30 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47083 * 2 1 4 4 C 1.34520 * 125.78870 * 89.99643 * 3 2 1 5 5 C 1.41377 * 106.84062 * 179.78923 * 4 3 2 6 6 C 1.34511 * 106.83957 * 0.37616 * 5 4 3 7 7 C 1.50701 * 125.78853 * 179.88795 * 6 5 4 8 8 H 1.09004 * 110.67434 * 336.74756 * 7 6 5 9 9 C 1.54994 * 110.62295 * 99.71491 * 7 6 5 10 10 C 1.54807 * 102.09528 * 155.52490 * 9 7 6 11 11 C 1.54102 * 104.18898 * 339.12160 * 10 9 7 12 12 C 1.52995 * 109.87837 * 238.39902 * 11 10 9 13 13 C 1.50700 * 109.87997 * 117.39051 * 11 10 9 14 14 H 1.07997 * 119.99901 * 4.71942 * 13 11 10 15 15 C 1.37876 * 119.99919 * 184.71128 * 13 11 10 16 16 N 1.31511 * 120.00085 * 6.49433 * 15 13 11 17 17 Si 1.86803 * 119.99933 * 186.49169 * 15 13 11 18 18 H 1.48502 * 109.46747 * 85.21153 * 17 15 13 19 19 H 1.48494 * 109.47136 * 205.21482 * 17 15 13 20 20 H 1.48504 * 109.46869 * 325.21625 * 17 15 13 21 21 O 1.43745 * 107.29119 * 357.96943 * 11 10 9 22 22 O 1.34297 * 125.79279 * 270.02149 * 3 2 1 23 23 H 1.09007 * 109.46833 * 59.99737 * 1 2 3 24 24 H 1.08995 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47308 * 300.00258 * 1 2 3 26 26 H 1.08995 * 109.47555 * 240.00084 * 2 1 3 27 27 H 1.08996 * 109.47016 * 119.99779 * 2 1 3 28 28 H 1.08005 * 126.58069 * 0.05270 * 4 3 2 29 29 H 1.08007 * 126.58016 * 180.23590 * 5 4 3 30 30 H 1.09004 * 110.90278 * 37.32523 * 9 7 6 31 31 H 1.08997 * 110.90564 * 273.72512 * 9 7 6 32 32 H 1.08994 * 110.48768 * 97.80018 * 10 9 7 33 33 H 1.09003 * 110.48714 * 220.44682 * 10 9 7 34 34 H 1.09005 * 109.47471 * 54.39576 * 12 11 10 35 35 H 1.09005 * 109.47224 * 174.39856 * 12 11 10 36 36 H 1.09002 * 109.47161 * 294.39538 * 12 11 10 37 37 H 0.97002 * 119.99953 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7449 3.4215 0.6321 6 6 2.7232 3.3768 -0.7121 7 6 3.1196 4.4980 -1.6377 8 1 3.0380 5.4607 -1.1331 9 6 4.5584 4.2820 -2.1720 10 6 4.5362 5.0829 -3.4966 11 6 3.0392 5.1968 -3.8441 12 6 2.7753 4.5770 -5.2177 13 6 2.6225 6.6451 -3.8469 14 1 3.3607 7.4196 -3.6998 15 6 1.2991 6.9813 -4.0375 16 7 0.3823 6.0399 -4.0891 17 14 0.8082 8.7742 -4.2225 18 1 0.9648 9.1864 -5.6405 19 1 -0.6084 8.9445 -3.8109 20 1 1.6781 9.6167 -3.3631 21 8 2.3102 4.4806 -2.8332 22 8 2.2938 2.1615 -1.0893 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1862 1.8539 2.1205 29 1 3.0463 4.2594 1.2435 30 1 4.7490 3.2252 -2.3595 31 1 5.2953 4.6923 -1.4817 32 1 4.9705 6.0720 -3.3517 33 1 5.0692 4.5419 -4.2785 34 1 3.1532 3.5547 -5.2338 35 1 1.7030 4.5711 -5.4138 36 1 3.2816 5.1635 -5.9844 37 1 -0.5489 6.2765 -4.2228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390506854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:38 Heat of formation + Delta-G solvation = -41.101465 kcal Electronic energy + Delta-G solvation = -18809.249550 eV Core-core repulsion = 15939.038585 eV Total energy + Delta-G solvation = -2870.210964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11845 -38.27586 -34.05155 -33.00934 -32.33564 -30.98106 -30.36751 -27.96902 -25.21496 -24.80492 -22.80374 -21.37999 -20.94481 -19.52655 -19.35292 -16.50112 -16.29385 -15.61327 -15.17424 -14.70252 -14.42958 -14.19720 -13.46795 -12.92044 -12.73369 -12.70408 -12.32931 -12.30456 -12.16900 -11.48792 -11.44310 -11.21860 -11.12045 -10.95409 -10.84790 -10.56961 -10.54086 -10.39667 -9.89776 -9.55273 -9.37335 -9.18441 -8.47999 -8.03217 -7.74122 -5.92369 -4.09386 2.16904 3.00552 3.31314 3.37526 3.38521 3.40054 4.43719 4.81318 4.98977 5.15293 5.30331 5.33982 5.41552 5.51030 5.57029 5.61824 5.80190 5.81383 5.91677 6.09919 6.16685 6.23209 6.27406 6.32690 6.49725 6.55762 6.63449 6.68937 6.84459 6.90799 6.94414 7.06697 7.34775 7.71767 7.80912 7.95055 8.31452 8.55984 8.99595 9.61977 11.10048 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025565 B = 0.006373 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.970146 B = 4392.423248 C = 4673.304128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.039 4.039 3 C -0.029 4.029 4 C -0.210 4.210 5 C -0.225 4.225 6 C 0.030 3.970 7 C 0.154 3.846 8 H 0.091 0.909 9 C -0.144 4.144 10 C -0.142 4.142 11 C 0.223 3.777 12 C -0.124 4.124 13 C -0.551 4.551 14 H 0.058 0.942 15 C 0.082 3.918 16 N -0.852 5.852 17 Si 0.884 3.116 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.335 6.335 22 O -0.156 6.156 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -8.636 7.468 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.079 4.079 4 C -0.230 4.230 5 C -0.244 4.244 6 C -0.021 4.021 7 C 0.094 3.906 8 H 0.108 0.892 9 C -0.182 4.182 10 C -0.180 4.180 11 C 0.185 3.815 12 C -0.181 4.181 13 C -0.588 4.588 14 H 0.076 0.924 15 C -0.124 4.124 16 N -0.487 5.487 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.200 1.200 21 O -0.254 6.254 22 O -0.051 6.051 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.556 -8.880 7.097 11.911 hybrid contribution -0.140 1.284 0.233 1.313 sum 3.417 -7.596 7.331 11.096 Atomic orbital electron populations 1.21794 0.94189 1.01808 1.02987 1.19987 0.96261 0.87914 1.03437 1.22368 1.05487 0.95369 0.84711 1.21396 1.08048 0.94695 0.98812 1.21406 1.09875 0.99507 0.93661 1.22690 1.00341 0.84948 0.94105 1.21318 0.89978 0.90826 0.88431 0.89195 1.23111 0.96515 1.00484 0.98069 1.23107 1.00329 0.99230 0.95296 1.19685 0.84560 0.91268 0.85967 1.21696 1.03508 0.96163 0.96760 1.21411 0.93603 0.91055 1.52766 0.92372 1.25015 0.96679 0.96730 0.94010 1.70081 1.00764 1.31774 1.46067 0.86766 0.77735 0.85883 0.78471 1.20512 1.21275 1.19957 1.89174 1.41805 1.76268 1.18189 1.84062 1.64410 1.22298 1.34327 0.91897 0.92033 0.92332 0.90362 0.89462 0.84137 0.83826 0.91740 0.91530 0.91410 0.92538 0.96395 0.90654 0.93784 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 37.16 0.37 -1.36 16 2 C -0.04 -0.47 6.47 -27.88 -0.18 -0.65 16 3 C -0.03 -0.48 6.58 -35.62 -0.23 -0.71 16 4 C -0.21 -3.34 10.81 -39.70 -0.43 -3.76 16 5 C -0.23 -3.98 10.81 -39.71 -0.43 -4.41 16 6 C 0.03 0.62 6.30 -35.63 -0.22 0.40 16 7 C 0.15 3.37 3.75 -26.83 -0.10 3.27 16 8 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 9 C -0.14 -2.75 6.57 -24.73 -0.16 -2.91 16 10 C -0.14 -2.96 6.26 -25.20 -0.16 -3.11 16 11 C 0.22 5.61 0.74 -91.20 -0.07 5.54 16 12 C -0.12 -3.02 8.43 37.16 0.31 -2.71 16 13 C -0.55 -14.99 8.15 -34.44 -0.28 -15.27 16 14 H 0.06 1.55 7.35 -52.49 -0.39 1.16 16 15 C 0.08 2.28 5.23 -17.82 -0.09 2.18 16 16 N -0.85 -24.85 11.27 55.43 0.62 -24.23 16 17 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.34 -8.90 9.65 -37.36 -0.36 -9.26 16 22 O -0.16 -3.22 10.65 3.61 0.04 -3.18 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.37 7.40 -51.93 -0.38 0.99 16 33 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 2.03 6.78 -51.93 -0.35 1.68 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -30.91 307.41 -7.49 -38.40 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.73 Total: 1.00 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.68 Total: -23.51 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.62 Total: -24.23 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.32 Total: -12.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.91 -7.49 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390506854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds