Wall clock time and date at job start Mon Mar 30 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47083 * 2 1 4 4 C 1.34520 * 125.78870 * 89.99643 * 3 2 1 5 5 C 1.41377 * 106.84062 * 179.78923 * 4 3 2 6 6 C 1.34511 * 106.83957 * 0.37616 * 5 4 3 7 7 C 1.50701 * 125.78853 * 179.88795 * 6 5 4 8 8 H 1.09004 * 110.67434 * 336.74756 * 7 6 5 9 9 C 1.54994 * 110.62295 * 99.71491 * 7 6 5 10 10 C 1.54807 * 102.09528 * 155.52490 * 9 7 6 11 11 C 1.54102 * 104.18898 * 339.12160 * 10 9 7 12 12 C 1.52995 * 109.87837 * 238.39902 * 11 10 9 13 13 C 1.50700 * 109.87997 * 117.39051 * 11 10 9 14 14 H 1.07997 * 119.99901 * 4.71942 * 13 11 10 15 15 C 1.37876 * 119.99919 * 184.71128 * 13 11 10 16 16 N 1.31511 * 120.00085 * 6.49433 * 15 13 11 17 17 Si 1.86803 * 119.99933 * 186.49169 * 15 13 11 18 18 H 1.48502 * 109.46747 * 85.21153 * 17 15 13 19 19 H 1.48494 * 109.47136 * 205.21482 * 17 15 13 20 20 H 1.48504 * 109.46869 * 325.21625 * 17 15 13 21 21 O 1.43745 * 107.29119 * 357.96943 * 11 10 9 22 22 O 1.34297 * 125.79279 * 270.02149 * 3 2 1 23 23 H 1.09007 * 109.46833 * 59.99737 * 1 2 3 24 24 H 1.08995 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47308 * 300.00258 * 1 2 3 26 26 H 1.08995 * 109.47555 * 240.00084 * 2 1 3 27 27 H 1.08996 * 109.47016 * 119.99779 * 2 1 3 28 28 H 1.08005 * 126.58069 * 0.05270 * 4 3 2 29 29 H 1.08007 * 126.58016 * 180.23590 * 5 4 3 30 30 H 1.09004 * 110.90278 * 37.32523 * 9 7 6 31 31 H 1.08997 * 110.90564 * 273.72512 * 9 7 6 32 32 H 1.08994 * 110.48768 * 97.80018 * 10 9 7 33 33 H 1.09003 * 110.48714 * 220.44682 * 10 9 7 34 34 H 1.09005 * 109.47471 * 54.39576 * 12 11 10 35 35 H 1.09005 * 109.47224 * 174.39856 * 12 11 10 36 36 H 1.09002 * 109.47161 * 294.39538 * 12 11 10 37 37 H 0.97002 * 119.99953 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7449 3.4215 0.6321 6 6 2.7232 3.3768 -0.7121 7 6 3.1196 4.4980 -1.6377 8 1 3.0380 5.4607 -1.1331 9 6 4.5584 4.2820 -2.1720 10 6 4.5362 5.0829 -3.4966 11 6 3.0392 5.1968 -3.8441 12 6 2.7753 4.5770 -5.2177 13 6 2.6225 6.6451 -3.8469 14 1 3.3607 7.4196 -3.6998 15 6 1.2991 6.9813 -4.0375 16 7 0.3823 6.0399 -4.0891 17 14 0.8082 8.7742 -4.2225 18 1 0.9648 9.1864 -5.6405 19 1 -0.6084 8.9445 -3.8109 20 1 1.6781 9.6167 -3.3631 21 8 2.3102 4.4806 -2.8332 22 8 2.2938 2.1615 -1.0893 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1862 1.8539 2.1205 29 1 3.0463 4.2594 1.2435 30 1 4.7490 3.2252 -2.3595 31 1 5.2953 4.6923 -1.4817 32 1 4.9705 6.0720 -3.3517 33 1 5.0692 4.5419 -4.2785 34 1 3.1532 3.5547 -5.2338 35 1 1.7030 4.5711 -5.4138 36 1 3.2816 5.1635 -5.9844 37 1 -0.5489 6.2765 -4.2228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390506854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:38 Heat of formation + Delta-G solvation = -58.642423 kcal Electronic energy + Delta-G solvation = -18810.010183 eV Core-core repulsion = 15939.038585 eV Total energy + Delta-G solvation = -2870.971597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49780 -40.06002 -35.25258 -34.79666 -33.82319 -32.78725 -32.05561 -29.43191 -27.27596 -26.29046 -24.08677 -22.80513 -22.42847 -21.21916 -20.89335 -18.49366 -17.71251 -17.11829 -16.84965 -16.44437 -15.97426 -15.35716 -15.20057 -14.38858 -14.28921 -14.06017 -13.95419 -13.63853 -13.41221 -13.23918 -13.08293 -12.87805 -12.73000 -12.47389 -12.35447 -12.27115 -12.25367 -11.88192 -11.69491 -11.28774 -11.05068 -10.75417 -10.58736 -9.92969 -9.14591 -8.01477 -6.24915 0.79390 1.41262 1.41847 1.50852 1.69448 2.07503 2.43414 3.13058 3.45447 3.75663 3.90117 4.01747 4.16933 4.22255 4.28122 4.37813 4.51674 4.60347 4.62748 4.72339 4.87916 4.90235 4.92316 4.98411 4.99927 5.06057 5.10665 5.20293 5.23126 5.28937 5.34765 5.44253 5.68493 5.72508 5.95290 6.26228 6.35941 6.64927 6.98946 7.50744 9.00009 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025565 B = 0.006373 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.970146 B = 4392.423248 C = 4673.304128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.034 4.034 4 C -0.212 4.212 5 C -0.215 4.215 6 C -0.014 4.014 7 C 0.146 3.854 8 H 0.078 0.922 9 C -0.129 4.129 10 C -0.136 4.136 11 C 0.205 3.795 12 C -0.118 4.118 13 C -0.561 4.561 14 H 0.059 0.941 15 C 0.031 3.969 16 N -0.887 5.887 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.267 1.267 21 O -0.372 6.372 22 O -0.190 6.190 23 H 0.032 0.968 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -9.228 9.077 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C -0.084 4.084 4 C -0.230 4.230 5 C -0.234 4.234 6 C -0.064 4.064 7 C 0.088 3.912 8 H 0.095 0.905 9 C -0.167 4.167 10 C -0.174 4.174 11 C 0.167 3.833 12 C -0.175 4.175 13 C -0.599 4.599 14 H 0.077 0.923 15 C -0.172 4.172 16 N -0.524 5.524 17 Si 0.772 3.228 18 H -0.197 1.197 19 H -0.216 1.216 20 H -0.191 1.191 21 O -0.292 6.292 22 O -0.087 6.087 23 H 0.051 0.949 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.142 0.858 28 H 0.195 0.805 29 H 0.181 0.819 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.630 -9.463 8.710 13.669 hybrid contribution -0.480 1.392 -0.206 1.486 sum 4.150 -8.071 8.504 12.437 Atomic orbital electron populations 1.21787 0.93781 1.03353 1.01608 1.20259 0.96479 0.85521 1.05339 1.23356 1.04198 0.96819 0.84028 1.21814 1.07274 0.93609 1.00347 1.21791 1.08004 1.00815 0.92759 1.22574 1.03770 0.85237 0.94865 1.21385 0.91186 0.91330 0.87316 0.90463 1.23037 0.95563 1.00566 0.97518 1.23011 0.97460 1.00153 0.96788 1.19858 0.87145 0.90241 0.86039 1.21619 1.01382 0.97294 0.97250 1.21799 0.93705 0.92471 1.51882 0.92281 1.25776 0.96848 1.00600 0.93940 1.70248 1.00770 1.33744 1.47626 0.85769 0.77089 0.81182 0.78719 1.19722 1.21571 1.19119 1.89109 1.43841 1.76319 1.19964 1.84020 1.65293 1.22853 1.36511 0.94912 0.89043 0.92049 0.90128 0.85822 0.80510 0.81861 0.91435 0.88438 0.90935 0.90831 0.94982 0.94003 0.92708 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.89 71.98 0.71 -2.42 16 2 C -0.04 -0.85 6.47 29.85 0.19 -0.66 16 3 C -0.03 -1.09 6.58 24.83 0.16 -0.92 16 4 C -0.21 -6.20 10.81 22.19 0.24 -5.96 16 5 C -0.21 -7.30 10.81 22.19 0.24 -7.06 16 6 C -0.01 -0.59 6.30 24.83 0.16 -0.43 16 7 C 0.15 6.51 3.75 30.53 0.11 6.62 16 8 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 9 C -0.13 -4.79 6.57 31.89 0.21 -4.58 16 10 C -0.14 -5.55 6.26 31.58 0.20 -5.35 16 11 C 0.20 10.44 0.74 -11.17 -0.01 10.43 16 12 C -0.12 -5.86 8.43 71.98 0.61 -5.26 16 13 C -0.56 -30.87 8.15 25.60 0.21 -30.66 16 14 H 0.06 3.14 7.35 -2.91 -0.02 3.12 16 15 C 0.03 1.75 5.23 84.65 0.44 2.19 16 16 N -0.89 -53.52 11.27 21.45 0.24 -53.28 16 17 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 O -0.37 -20.38 9.65 -146.94 -1.42 -21.80 16 22 O -0.19 -7.94 10.65 -0.36 0.00 -7.94 16 23 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.07 2.44 8.05 -2.38 -0.02 2.42 16 31 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.07 2.84 7.40 -2.39 -0.02 2.82 16 33 H 0.07 2.69 7.70 -2.39 -0.02 2.68 16 34 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.04 2.33 6.78 -2.38 -0.02 2.31 16 36 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -68.84 307.41 5.36 -63.48 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.04 Total: 17.53 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.48 Total: -44.06 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.24 Total: -53.28 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.42 Total: -29.75 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.84 5.36 -63.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390506854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.840 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds