Wall clock time and date at job start Mon Mar 30 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.34513 * 125.78818 * 89.99906 * 3 2 1 5 5 C 1.41389 * 106.83899 * 180.02562 * 4 3 2 6 6 C 1.34514 * 106.83950 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.78790 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.27042 * 339.30431 * 7 6 5 9 9 C 1.54942 * 110.30875 * 101.39324 * 7 6 5 10 10 C 1.55416 * 100.89400 * 155.28922 * 9 7 6 11 11 C 1.54383 * 102.30751 * 325.99133 * 10 9 7 12 12 C 1.52998 * 109.90763 * 140.84412 * 11 10 9 13 13 C 1.50703 * 109.82635 * 261.77129 * 11 10 9 14 14 H 1.07996 * 120.00180 * 359.59146 * 13 11 10 15 15 C 1.37876 * 119.99557 * 179.58423 * 13 11 10 16 16 N 1.31513 * 120.00259 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99828 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46901 * 60.00057 * 17 15 13 19 19 H 1.48497 * 109.47240 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47221 * 300.00513 * 17 15 13 21 21 O 1.43241 * 107.58978 * 21.28133 * 11 10 9 22 22 O 1.34296 * 108.42298 * 359.73887 * 6 5 4 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 28 28 H 1.07995 * 126.58487 * 359.96651 * 4 3 2 29 29 H 1.07997 * 126.57948 * 180.02562 * 5 4 3 30 30 H 1.09010 * 111.12406 * 273.27766 * 9 7 6 31 31 H 1.08995 * 111.12594 * 37.43566 * 9 7 6 32 32 H 1.08992 * 110.88332 * 207.75157 * 10 9 7 33 33 H 1.08997 * 110.76008 * 84.17187 * 10 9 7 34 34 H 1.09003 * 109.46950 * 300.36133 * 12 11 10 35 35 H 1.08997 * 109.46989 * 60.36274 * 12 11 10 36 36 H 1.08998 * 109.46858 * 180.36668 * 12 11 10 37 37 H 0.97002 * 119.99829 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7396 3.4235 0.6320 6 6 2.7234 3.3767 -0.7122 7 6 3.1188 4.4983 -1.6379 8 1 3.0723 5.4536 -1.1151 9 6 4.5448 4.2587 -2.1945 10 6 4.4843 5.0723 -3.5173 11 6 3.0156 4.8825 -3.9536 12 6 2.4723 6.1886 -4.5363 13 6 2.9262 3.7867 -4.9844 14 1 3.8207 3.2757 -5.3083 15 6 1.7022 3.4367 -5.5138 16 7 0.6129 4.0592 -5.1196 17 14 1.5913 2.0789 -6.7921 18 1 2.1081 0.8121 -6.2147 19 1 0.1748 1.8965 -7.1989 20 1 2.4030 2.4492 -7.9791 21 8 2.2623 4.5185 -2.7909 22 8 2.3000 2.1594 -1.0894 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.1850 1.8543 2.1204 29 1 3.0366 4.2628 1.2433 30 1 5.3021 4.6584 -1.5200 31 1 4.7167 3.2007 -2.3923 32 1 5.1662 4.6580 -4.2598 33 1 4.7016 6.1246 -3.3340 34 1 2.5303 6.9744 -3.7831 35 1 3.0657 6.4735 -5.4051 36 1 1.4337 6.0484 -4.8358 37 1 -0.2482 3.8131 -5.4923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390506858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:40 Heat of formation + Delta-G solvation = -40.200279 kcal Electronic energy + Delta-G solvation = -18980.521872 eV Core-core repulsion = 16110.349986 eV Total energy + Delta-G solvation = -2870.171886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05372 -38.32039 -33.98197 -33.07845 -32.30382 -31.00262 -30.31387 -27.89254 -25.28824 -24.70132 -22.75791 -21.31557 -20.87832 -19.63750 -19.27665 -16.83408 -16.19885 -15.50506 -15.09978 -14.64202 -14.38305 -14.10054 -13.44877 -12.87544 -12.80540 -12.67116 -12.39446 -12.23789 -12.04947 -11.66726 -11.34418 -11.23693 -10.96725 -10.83799 -10.82557 -10.56356 -10.49121 -10.30562 -9.92998 -9.68315 -9.37908 -9.14225 -8.43960 -8.01686 -7.69998 -5.90668 -4.06559 2.23277 3.02954 3.34414 3.38947 3.41516 3.45353 4.46198 4.84106 5.02231 5.19250 5.36177 5.37840 5.45958 5.50283 5.54569 5.65300 5.71004 5.87496 5.98537 6.04265 6.10033 6.25727 6.30873 6.32029 6.46735 6.53196 6.65404 6.75607 6.82578 6.91929 6.98568 7.12468 7.32437 7.78855 7.83297 8.11739 8.38763 8.60753 9.05560 9.64163 11.11452 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.008771 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.921887 B = 3191.646716 C = 4227.057269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.025 4.025 4 C -0.214 4.214 5 C -0.230 4.230 6 C 0.027 3.973 7 C 0.147 3.853 8 H 0.079 0.921 9 C -0.139 4.139 10 C -0.142 4.142 11 C 0.226 3.774 12 C -0.140 4.140 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.083 3.917 16 N -0.859 5.859 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.340 6.340 22 O -0.145 6.145 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -3.080 9.834 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.234 4.234 5 C -0.250 4.250 6 C -0.025 4.025 7 C 0.087 3.913 8 H 0.097 0.903 9 C -0.177 4.177 10 C -0.179 4.179 11 C 0.189 3.811 12 C -0.198 4.198 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.122 4.122 16 N -0.495 5.495 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.259 6.259 22 O -0.040 6.040 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.945 -3.206 9.485 10.437 hybrid contribution 0.135 -0.636 -0.361 0.743 sum 3.080 -3.841 9.125 10.368 Atomic orbital electron populations 1.21785 0.94207 1.01809 1.02917 1.19997 0.96278 0.88029 1.03471 1.22405 1.05000 0.95443 0.84760 1.21366 1.08515 0.94752 0.98726 1.21379 1.10496 0.99478 0.93620 1.22798 1.00458 0.85323 0.93893 1.21252 0.90831 0.90365 0.88806 0.90318 1.23186 0.95532 1.01704 0.97298 1.23258 1.00687 0.98036 0.95953 1.19725 0.84220 0.93348 0.83781 1.21997 1.05024 0.94966 0.97797 1.21159 0.93421 1.20265 1.22049 0.92429 1.24975 0.95838 0.95716 0.95719 1.69938 0.98084 1.40015 1.41505 0.86772 0.77002 0.82956 0.81875 1.20199 1.21228 1.20238 1.88886 1.32836 1.90094 1.14122 1.84156 1.63855 1.22000 1.33957 0.92055 0.92422 0.91827 0.89509 0.90239 0.84240 0.84033 0.91658 0.90697 0.90938 0.92719 0.96902 0.94331 0.89096 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.90 37.16 0.37 -1.54 16 2 C -0.04 -0.55 6.47 -27.88 -0.18 -0.73 16 3 C -0.03 -0.45 6.58 -35.63 -0.23 -0.68 16 4 C -0.21 -3.49 10.81 -39.70 -0.43 -3.92 16 5 C -0.23 -4.04 10.81 -39.70 -0.43 -4.47 16 6 C 0.03 0.56 6.26 -35.62 -0.22 0.34 16 7 C 0.15 3.11 3.91 -26.86 -0.10 3.00 16 8 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 9 C -0.14 -2.69 6.57 -24.42 -0.16 -2.85 16 10 C -0.14 -2.93 6.08 -24.72 -0.15 -3.08 16 11 C 0.23 5.72 0.82 -91.05 -0.07 5.65 16 12 C -0.14 -3.43 8.53 37.16 0.32 -3.11 16 13 C -0.53 -14.83 8.23 -34.44 -0.28 -15.11 16 14 H 0.06 1.58 7.48 -52.49 -0.39 1.19 16 15 C 0.08 2.34 5.26 -17.82 -0.09 2.25 16 16 N -0.86 -25.16 10.92 55.43 0.61 -24.56 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 O -0.34 -8.99 9.84 -36.76 -0.36 -9.35 16 22 O -0.15 -3.23 10.65 4.18 0.04 -3.18 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.07 1.54 8.05 -51.93 -0.42 1.12 16 32 H 0.07 1.47 7.60 -51.93 -0.39 1.08 16 33 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -31.41 307.20 -7.49 -38.90 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.71 Total: 1.19 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.68 Total: -24.26 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.61 Total: -24.56 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.32 Total: -12.54 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.41 -7.49 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390506858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.299 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds