Wall clock time and date at job start Mon Mar 30 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.34513 * 125.78818 * 89.99906 * 3 2 1 5 5 C 1.41389 * 106.83899 * 180.02562 * 4 3 2 6 6 C 1.34514 * 106.83950 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.78790 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.27042 * 339.30431 * 7 6 5 9 9 C 1.54942 * 110.30875 * 101.39324 * 7 6 5 10 10 C 1.55416 * 100.89400 * 155.28922 * 9 7 6 11 11 C 1.54383 * 102.30751 * 325.99133 * 10 9 7 12 12 C 1.52998 * 109.90763 * 140.84412 * 11 10 9 13 13 C 1.50703 * 109.82635 * 261.77129 * 11 10 9 14 14 H 1.07996 * 120.00180 * 359.59146 * 13 11 10 15 15 C 1.37876 * 119.99557 * 179.58423 * 13 11 10 16 16 N 1.31513 * 120.00259 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99828 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46901 * 60.00057 * 17 15 13 19 19 H 1.48497 * 109.47240 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47221 * 300.00513 * 17 15 13 21 21 O 1.43241 * 107.58978 * 21.28133 * 11 10 9 22 22 O 1.34296 * 108.42298 * 359.73887 * 6 5 4 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 28 28 H 1.07995 * 126.58487 * 359.96651 * 4 3 2 29 29 H 1.07997 * 126.57948 * 180.02562 * 5 4 3 30 30 H 1.09010 * 111.12406 * 273.27766 * 9 7 6 31 31 H 1.08995 * 111.12594 * 37.43566 * 9 7 6 32 32 H 1.08992 * 110.88332 * 207.75157 * 10 9 7 33 33 H 1.08997 * 110.76008 * 84.17187 * 10 9 7 34 34 H 1.09003 * 109.46950 * 300.36133 * 12 11 10 35 35 H 1.08997 * 109.46989 * 60.36274 * 12 11 10 36 36 H 1.08998 * 109.46858 * 180.36668 * 12 11 10 37 37 H 0.97002 * 119.99829 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7396 3.4235 0.6320 6 6 2.7234 3.3767 -0.7122 7 6 3.1188 4.4983 -1.6379 8 1 3.0723 5.4536 -1.1151 9 6 4.5448 4.2587 -2.1945 10 6 4.4843 5.0723 -3.5173 11 6 3.0156 4.8825 -3.9536 12 6 2.4723 6.1886 -4.5363 13 6 2.9262 3.7867 -4.9844 14 1 3.8207 3.2757 -5.3083 15 6 1.7022 3.4367 -5.5138 16 7 0.6129 4.0592 -5.1196 17 14 1.5913 2.0789 -6.7921 18 1 2.1081 0.8121 -6.2147 19 1 0.1748 1.8965 -7.1989 20 1 2.4030 2.4492 -7.9791 21 8 2.2623 4.5185 -2.7909 22 8 2.3000 2.1594 -1.0894 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.1850 1.8543 2.1204 29 1 3.0366 4.2628 1.2433 30 1 5.3021 4.6584 -1.5200 31 1 4.7167 3.2007 -2.3923 32 1 5.1662 4.6580 -4.2598 33 1 4.7016 6.1246 -3.3340 34 1 2.5303 6.9744 -3.7831 35 1 3.0657 6.4735 -5.4051 36 1 1.4337 6.0484 -4.8358 37 1 -0.2482 3.8131 -5.4923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390506858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:40 Heat of formation + Delta-G solvation = -58.505362 kcal Electronic energy + Delta-G solvation = -18981.315640 eV Core-core repulsion = 16110.349986 eV Total energy + Delta-G solvation = -2870.965654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.46761 -40.08076 -35.30300 -34.86464 -33.80396 -32.77232 -32.01962 -29.38793 -27.30859 -26.26754 -24.07929 -22.74652 -22.34830 -21.38556 -20.80902 -18.78824 -17.68098 -16.97906 -16.76161 -16.56270 -15.92988 -15.31532 -15.13915 -14.68374 -14.25066 -13.96887 -13.86705 -13.57287 -13.56636 -13.21773 -13.21121 -12.79947 -12.65591 -12.43090 -12.31656 -12.25720 -12.17108 -11.94612 -11.76112 -11.45213 -10.99834 -10.73102 -10.57048 -9.89055 -9.12206 -8.02703 -6.24996 0.82483 1.36896 1.39107 1.45683 1.71503 2.14489 2.41582 3.08795 3.51797 3.74291 3.89557 3.96428 4.13048 4.20688 4.24798 4.34823 4.48846 4.57971 4.60067 4.73942 4.86724 4.89254 4.91881 4.97290 5.01366 5.08578 5.13651 5.20411 5.23306 5.33091 5.36622 5.41661 5.65694 5.75281 6.11652 6.33754 6.41502 6.63807 7.09840 7.50007 8.97625 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.008771 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.921887 B = 3191.646716 C = 4227.057269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.041 4.041 4 C -0.211 4.211 5 C -0.213 4.213 6 C -0.021 4.021 7 C 0.137 3.863 8 H 0.102 0.898 9 C -0.127 4.127 10 C -0.135 4.135 11 C 0.210 3.790 12 C -0.134 4.134 13 C -0.549 4.549 14 H 0.052 0.948 15 C 0.033 3.967 16 N -0.889 5.889 17 Si 0.943 3.057 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.264 1.264 21 O -0.380 6.380 22 O -0.193 6.193 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.027 0.973 26 H 0.125 0.875 27 H 0.071 0.929 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -3.538 11.795 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.229 4.229 5 C -0.232 4.232 6 C -0.071 4.071 7 C 0.079 3.921 8 H 0.119 0.881 9 C -0.165 4.165 10 C -0.173 4.173 11 C 0.173 3.827 12 C -0.191 4.191 13 C -0.587 4.587 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.526 5.526 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.189 1.189 21 O -0.301 6.301 22 O -0.090 6.090 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.144 0.856 27 H 0.089 0.911 28 H 0.196 0.804 29 H 0.190 0.810 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.033 -3.658 11.449 12.678 hybrid contribution -0.199 -0.513 -0.874 1.032 sum 3.834 -4.171 10.575 11.997 Atomic orbital electron populations 1.21769 0.93706 1.03286 1.01575 1.20245 0.96639 0.86067 1.04940 1.23327 1.04615 0.96872 0.84320 1.21817 1.07221 0.93841 1.00046 1.21809 1.08146 1.00727 0.92493 1.22949 1.03628 0.85357 0.95157 1.21561 0.90981 0.91903 0.87671 0.88108 1.23123 0.95806 1.00339 0.97209 1.23170 0.97543 0.99992 0.96584 1.19843 0.86945 0.92481 0.83460 1.21879 1.02950 0.95675 0.98639 1.21581 0.93211 1.20954 1.22944 0.92996 1.25707 0.95699 0.97831 0.97686 1.70097 0.98269 1.41421 1.42799 0.85870 0.77133 0.80140 0.79983 1.20443 1.20909 1.18877 1.88792 1.34983 1.90469 1.15819 1.84105 1.65136 1.23203 1.36546 0.89183 0.91506 0.95349 0.85650 0.91061 0.80449 0.81019 0.87437 0.92935 0.91065 0.89989 0.94808 0.93580 0.92478 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.90 71.98 0.71 -2.83 16 2 C -0.04 -1.07 6.47 29.85 0.19 -0.88 16 3 C -0.04 -1.43 6.58 24.83 0.16 -1.27 16 4 C -0.21 -6.29 10.81 22.19 0.24 -6.05 16 5 C -0.21 -6.98 10.81 22.19 0.24 -6.74 16 6 C -0.02 -0.85 6.26 24.83 0.16 -0.69 16 7 C 0.14 5.75 3.91 30.51 0.12 5.87 16 8 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 9 C -0.13 -4.74 6.57 32.09 0.21 -4.53 16 10 C -0.14 -5.45 6.08 31.89 0.19 -5.26 16 11 C 0.21 10.73 0.82 -11.07 -0.01 10.72 16 12 C -0.13 -6.60 8.53 71.98 0.61 -5.98 16 13 C -0.55 -31.39 8.23 25.60 0.21 -31.18 16 14 H 0.05 2.92 7.48 -2.91 -0.02 2.89 16 15 C 0.03 1.91 5.26 84.65 0.45 2.36 16 16 N -0.89 -53.97 10.92 21.45 0.23 -53.74 16 17 Si 0.94 45.53 29.54 68.60 2.03 47.55 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 21 O -0.38 -20.57 9.84 -147.52 -1.45 -22.02 16 22 O -0.19 -8.79 10.65 -1.02 -0.01 -8.80 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.11 3.04 8.14 -2.38 -0.02 3.03 16 31 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 32 H 0.07 2.84 7.60 -2.39 -0.02 2.82 16 33 H 0.08 2.82 7.85 -2.39 -0.02 2.80 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 3.20 6.04 -2.39 -0.01 3.19 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.22 307.20 5.32 -65.89 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.04 Total: 17.57 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 3.49 Total: -46.46 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.23 Total: -53.74 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.46 Total: -30.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.22 5.32 -65.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390506858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.389 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds