Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.27780 * 2 1 4 4 C 1.50703 * 109.47106 * 59.29984 * 3 2 1 5 5 C 1.34513 * 125.78797 * 89.71512 * 4 3 2 6 6 C 1.41387 * 106.83840 * 179.89269 * 5 4 3 7 7 C 1.34519 * 106.84155 * 0.37240 * 6 5 4 8 8 O 1.34302 * 125.78879 * 270.02637 * 4 3 2 9 9 C 1.54947 * 110.30930 * 237.91061 * 2 1 3 10 10 C 1.55571 * 100.82464 * 277.47564 * 9 2 1 11 11 C 1.54379 * 102.27683 * 325.88164 * 10 9 2 12 12 C 1.52995 * 109.83177 * 261.83810 * 11 10 9 13 13 C 1.50704 * 109.90354 * 140.90649 * 11 10 9 14 14 H 1.07998 * 120.00039 * 0.37386 * 13 11 10 15 15 C 1.37876 * 119.99489 * 180.36590 * 13 11 10 16 16 N 1.31512 * 120.00617 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99806 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47360 * 119.99730 * 17 15 13 20 20 H 1.48495 * 109.47097 * 240.00374 * 17 15 13 21 21 O 1.43243 * 107.58660 * 21.35769 * 11 10 9 22 22 H 1.09002 * 109.47153 * 60.69859 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.70049 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.70031 * 1 2 3 25 25 H 1.09002 * 109.47425 * 179.29510 * 3 2 1 26 26 H 1.09001 * 109.47172 * 299.30363 * 3 2 1 27 27 H 1.07998 * 126.58262 * 0.02587 * 5 4 3 28 28 H 1.08000 * 126.58014 * 180.12381 * 6 5 4 29 29 H 1.07993 * 125.79088 * 179.79314 * 7 6 5 30 30 H 1.08991 * 111.12937 * 35.44769 * 9 2 1 31 31 H 1.09001 * 111.12698 * 159.61457 * 9 2 1 32 32 H 1.08998 * 110.84096 * 207.68347 * 10 9 2 33 33 H 1.09009 * 111.00717 * 84.15826 * 10 9 2 34 34 H 1.09003 * 109.47215 * 179.58540 * 12 11 10 35 35 H 1.08995 * 109.47541 * 299.59123 * 12 11 10 36 36 H 1.09002 * 109.46861 * 59.59153 * 12 11 10 37 37 H 0.96999 * 120.00315 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4351 0.0000 4 6 1.5539 2.1577 1.2217 5 6 2.1670 2.2053 2.4180 6 6 1.3497 2.9873 3.2663 7 6 0.2820 3.3639 2.5400 8 8 0.4110 2.8586 1.3024 9 6 2.0678 -0.7720 -1.2311 10 6 1.9827 -2.2378 -0.7169 11 6 2.2972 -2.0771 0.7860 12 6 3.7699 -2.4005 1.0456 13 6 1.4212 -2.9989 1.5948 14 1 0.7121 -3.6442 1.0976 15 6 1.5253 -3.0185 2.9695 16 7 2.3885 -2.2325 3.5750 17 14 0.4400 -4.1615 3.9721 18 1 -0.4396 -4.9356 3.0598 19 1 1.2916 -5.0963 4.7506 20 1 -0.3953 -3.3609 4.9029 21 8 2.0286 -0.7157 1.1413 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 0.5247 0.8837 24 1 -0.3634 -1.0276 0.0126 25 1 3.1501 1.4199 0.0126 26 1 1.7143 1.9503 -0.8962 27 1 3.1048 1.7378 2.6797 28 1 1.5434 3.2317 4.3003 29 1 -0.5394 3.9701 2.8922 30 1 1.4274 -0.6209 -2.1001 31 1 3.0980 -0.4919 -1.4512 32 1 2.7298 -2.8638 -1.2047 33 1 0.9823 -2.6456 -0.8625 34 1 3.9872 -2.2782 2.1067 35 1 3.9737 -3.4294 0.7492 36 1 4.3980 -1.7242 0.4658 37 1 2.4619 -2.2465 4.5421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390516694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -35.801547 kcal Electronic energy + Delta-G solvation = -19515.055353 eV Core-core repulsion = 16645.074210 eV Total energy + Delta-G solvation = -2869.981143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98987 -38.78852 -33.98678 -32.42389 -31.82646 -30.99294 -29.52187 -27.21860 -26.10562 -25.13354 -22.82823 -21.16130 -20.09519 -19.58209 -18.84674 -16.74157 -16.37119 -15.62807 -14.93517 -14.52812 -14.35264 -13.92726 -13.22820 -13.10896 -12.35321 -12.25269 -12.11504 -11.92219 -11.80579 -11.72118 -11.29881 -11.11946 -11.03430 -10.86921 -10.56689 -10.47254 -10.31216 -10.07046 -9.86740 -9.36004 -9.29516 -9.01654 -8.42091 -7.92514 -7.68743 -5.88295 -4.03521 2.30025 3.25670 3.32188 3.40873 3.43549 3.52655 4.47392 4.87645 5.18978 5.41510 5.48925 5.51092 5.59834 5.64184 5.72981 5.90660 6.04656 6.11418 6.22551 6.37979 6.41525 6.45502 6.57858 6.59402 6.63361 6.71554 6.77466 6.85054 6.96959 7.09134 7.13322 7.18497 7.48173 7.72391 7.85197 8.15723 8.43856 8.72236 9.13402 9.67205 11.13314 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.009361 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.598517 B = 2990.349220 C = 3719.997511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.104 3.896 3 C -0.029 4.029 4 C 0.008 3.992 5 C -0.187 4.187 6 C -0.208 4.208 7 C -0.065 4.065 8 O -0.182 6.182 9 C -0.147 4.147 10 C -0.139 4.139 11 C 0.229 3.771 12 C -0.138 4.138 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.083 3.917 16 N -0.857 5.857 17 Si 0.882 3.118 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.333 6.333 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.193 0.807 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.010 0.990 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 8.058 -5.655 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 C -0.067 4.067 4 C -0.042 4.042 5 C -0.206 4.206 6 C -0.228 4.228 7 C -0.132 4.132 8 O -0.079 6.079 9 C -0.185 4.185 10 C -0.177 4.177 11 C 0.191 3.809 12 C -0.196 4.196 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.122 4.122 16 N -0.493 5.493 17 Si 0.710 3.290 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 O -0.253 6.253 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.210 0.790 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.903 8.221 -5.507 9.936 hybrid contribution -0.651 -0.752 0.807 1.281 sum -1.554 7.469 -4.700 8.960 Atomic orbital electron populations 1.22108 0.95923 1.02360 1.00424 1.21999 0.93249 0.90188 0.88253 1.20346 1.00640 0.93673 0.92010 1.22194 0.85746 0.97678 0.98541 1.21516 1.03298 1.03178 0.92637 1.21784 0.96626 1.03474 1.00889 1.23752 1.01710 1.04565 0.83217 1.83959 1.37937 1.53970 1.32047 1.23280 1.00483 0.97276 0.97435 1.23248 1.01111 0.94464 0.98897 1.19613 0.92699 0.80559 0.88020 1.21972 0.96285 0.97182 1.04142 1.21281 1.22091 1.21917 0.91629 0.92586 1.24951 0.94712 0.94645 0.97898 1.69952 1.34059 1.36628 1.08692 0.86718 0.80901 0.80918 0.80460 1.19855 1.21060 1.21048 1.88821 1.83769 1.23140 1.29541 0.93798 0.92581 0.91741 0.88999 0.90430 0.83555 0.84235 0.79002 0.91778 0.91557 0.92360 0.91806 0.89231 0.94724 0.97066 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.59 37.16 0.32 -2.61 16 2 C 0.10 2.05 0.84 -89.60 -0.08 1.97 16 3 C -0.03 -0.50 5.09 -27.88 -0.14 -0.65 16 4 C 0.01 0.15 5.31 -35.62 -0.19 -0.04 16 5 C -0.19 -3.63 10.74 -39.70 -0.43 -4.06 16 6 C -0.21 -3.56 10.91 -39.70 -0.43 -4.00 16 7 C -0.07 -1.03 12.09 29.42 0.36 -0.67 16 8 O -0.18 -3.26 10.05 5.71 0.06 -3.20 16 9 C -0.15 -2.58 6.07 -24.34 -0.15 -2.73 16 10 C -0.14 -2.85 5.69 -24.64 -0.14 -2.99 16 11 C 0.23 5.61 0.82 -91.05 -0.07 5.53 16 12 C -0.14 -3.33 8.50 37.16 0.32 -3.01 16 13 C -0.53 -14.56 8.22 -34.44 -0.28 -14.84 16 14 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 15 C 0.08 2.31 5.26 -17.82 -0.09 2.22 16 16 N -0.86 -24.58 10.93 55.43 0.61 -23.98 16 17 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 O -0.33 -8.22 9.21 -35.23 -0.32 -8.55 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.18 6.77 -51.93 -0.35 0.83 16 24 H 0.06 1.34 7.49 -51.93 -0.39 0.95 16 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 28 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.19 2.17 8.06 -52.49 -0.42 1.74 16 30 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 32 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 33 H 0.06 1.32 7.32 -51.92 -0.38 0.94 16 34 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -30.34 301.43 -6.74 -37.08 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.59 Total: 3.51 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -1.01 Total: -25.88 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.61 Total: -23.98 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.27 Total: -11.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.34 -6.74 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.277 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds