Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.27780 * 2 1 4 4 C 1.50703 * 109.47106 * 59.29984 * 3 2 1 5 5 C 1.34513 * 125.78797 * 89.71512 * 4 3 2 6 6 C 1.41387 * 106.83840 * 179.89269 * 5 4 3 7 7 C 1.34519 * 106.84155 * 0.37240 * 6 5 4 8 8 O 1.34302 * 125.78879 * 270.02637 * 4 3 2 9 9 C 1.54947 * 110.30930 * 237.91061 * 2 1 3 10 10 C 1.55571 * 100.82464 * 277.47564 * 9 2 1 11 11 C 1.54379 * 102.27683 * 325.88164 * 10 9 2 12 12 C 1.52995 * 109.83177 * 261.83810 * 11 10 9 13 13 C 1.50704 * 109.90354 * 140.90649 * 11 10 9 14 14 H 1.07998 * 120.00039 * 0.37386 * 13 11 10 15 15 C 1.37876 * 119.99489 * 180.36590 * 13 11 10 16 16 N 1.31512 * 120.00617 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99806 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47360 * 119.99730 * 17 15 13 20 20 H 1.48495 * 109.47097 * 240.00374 * 17 15 13 21 21 O 1.43243 * 107.58660 * 21.35769 * 11 10 9 22 22 H 1.09002 * 109.47153 * 60.69859 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.70049 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.70031 * 1 2 3 25 25 H 1.09002 * 109.47425 * 179.29510 * 3 2 1 26 26 H 1.09001 * 109.47172 * 299.30363 * 3 2 1 27 27 H 1.07998 * 126.58262 * 0.02587 * 5 4 3 28 28 H 1.08000 * 126.58014 * 180.12381 * 6 5 4 29 29 H 1.07993 * 125.79088 * 179.79314 * 7 6 5 30 30 H 1.08991 * 111.12937 * 35.44769 * 9 2 1 31 31 H 1.09001 * 111.12698 * 159.61457 * 9 2 1 32 32 H 1.08998 * 110.84096 * 207.68347 * 10 9 2 33 33 H 1.09009 * 111.00717 * 84.15826 * 10 9 2 34 34 H 1.09003 * 109.47215 * 179.58540 * 12 11 10 35 35 H 1.08995 * 109.47541 * 299.59123 * 12 11 10 36 36 H 1.09002 * 109.46861 * 59.59153 * 12 11 10 37 37 H 0.96999 * 120.00315 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4351 0.0000 4 6 1.5539 2.1577 1.2217 5 6 2.1670 2.2053 2.4180 6 6 1.3497 2.9873 3.2663 7 6 0.2820 3.3639 2.5400 8 8 0.4110 2.8586 1.3024 9 6 2.0678 -0.7720 -1.2311 10 6 1.9827 -2.2378 -0.7169 11 6 2.2972 -2.0771 0.7860 12 6 3.7699 -2.4005 1.0456 13 6 1.4212 -2.9989 1.5948 14 1 0.7121 -3.6442 1.0976 15 6 1.5253 -3.0185 2.9695 16 7 2.3885 -2.2325 3.5750 17 14 0.4400 -4.1615 3.9721 18 1 -0.4396 -4.9356 3.0598 19 1 1.2916 -5.0963 4.7506 20 1 -0.3953 -3.3609 4.9029 21 8 2.0286 -0.7157 1.1413 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 0.5247 0.8837 24 1 -0.3634 -1.0276 0.0126 25 1 3.1501 1.4199 0.0126 26 1 1.7143 1.9503 -0.8962 27 1 3.1048 1.7378 2.6797 28 1 1.5434 3.2317 4.3003 29 1 -0.5394 3.9701 2.8922 30 1 1.4274 -0.6209 -2.1001 31 1 3.0980 -0.4919 -1.4512 32 1 2.7298 -2.8638 -1.2047 33 1 0.9823 -2.6456 -0.8625 34 1 3.9872 -2.2782 2.1067 35 1 3.9737 -3.4294 0.7492 36 1 4.3980 -1.7242 0.4658 37 1 2.4619 -2.2465 4.5421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390516694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -53.034107 kcal Electronic energy + Delta-G solvation = -19515.802613 eV Core-core repulsion = 16645.074210 eV Total energy + Delta-G solvation = -2870.728403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.33660 -40.43285 -35.72577 -33.94307 -33.53384 -32.67182 -31.08937 -28.86391 -27.61722 -27.07394 -24.44528 -22.52702 -21.50042 -21.31583 -20.42093 -18.39893 -18.00771 -17.05126 -16.70784 -16.30185 -15.84575 -15.46117 -14.98034 -14.58567 -14.07911 -13.64991 -13.58192 -13.50270 -13.45306 -13.31220 -13.02072 -12.83124 -12.71803 -12.48167 -12.40919 -12.21135 -12.02655 -11.90938 -11.47185 -11.04601 -10.82540 -10.67990 -10.51893 -9.67102 -9.13996 -7.97198 -6.18242 0.97030 1.36470 1.39717 1.48779 1.85919 2.24033 2.44125 3.14644 3.55719 3.88382 3.99567 4.15039 4.22537 4.28698 4.32629 4.53125 4.59366 4.68375 4.75714 4.87093 4.92786 5.02981 5.04958 5.05473 5.13433 5.19070 5.20266 5.23300 5.34557 5.45969 5.58819 5.61429 5.72876 5.77581 6.19928 6.36103 6.41682 6.75446 7.27122 7.57421 9.02246 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.009361 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.598517 B = 2990.349220 C = 3719.997511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 C -0.026 4.026 4 C -0.003 4.003 5 C -0.219 4.219 6 C -0.232 4.232 7 C -0.051 4.051 8 O -0.187 6.187 9 C -0.132 4.132 10 C -0.137 4.137 11 C 0.216 3.784 12 C -0.131 4.131 13 C -0.546 4.546 14 H 0.048 0.952 15 C 0.036 3.964 16 N -0.883 5.883 17 Si 0.936 3.064 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.288 1.288 21 O -0.365 6.365 22 H 0.079 0.921 23 H 0.032 0.968 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.156 0.844 29 H 0.239 0.761 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 8.964 -7.272 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.051 3.949 3 C -0.063 4.063 4 C -0.052 4.052 5 C -0.238 4.238 6 C -0.251 4.251 7 C -0.118 4.118 8 O -0.084 6.084 9 C -0.170 4.170 10 C -0.175 4.175 11 C 0.178 3.822 12 C -0.189 4.189 13 C -0.584 4.584 14 H 0.066 0.934 15 C -0.166 4.166 16 N -0.521 5.521 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.215 1.215 21 O -0.285 6.285 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.174 0.826 29 H 0.255 0.745 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.811 9.121 -7.136 11.721 hybrid contribution -0.394 -0.997 1.324 1.703 sum -2.206 8.124 -5.812 10.230 Atomic orbital electron populations 1.22039 0.96000 1.01020 1.01025 1.22318 0.93322 0.91402 0.87899 1.20389 1.00936 0.92089 0.92858 1.22424 0.85973 0.97972 0.98858 1.21624 1.03487 1.04546 0.94186 1.22076 0.97120 1.03973 1.01908 1.24613 1.01977 1.03185 0.82025 1.83964 1.37477 1.53932 1.33045 1.23251 1.02178 0.94234 0.97312 1.23142 1.01034 0.96949 0.96367 1.19648 0.91954 0.80408 0.90199 1.21852 0.96992 0.97843 1.02231 1.21667 1.22105 1.22370 0.92263 0.93413 1.25612 0.95921 0.96035 0.99044 1.70100 1.35407 1.38071 1.08485 0.85866 0.79451 0.79333 0.79060 1.19254 1.20433 1.21483 1.88760 1.84164 1.23177 1.32395 0.90215 0.94932 0.93901 0.88557 0.86947 0.85561 0.82593 0.74499 0.88488 0.89865 0.90987 0.92534 0.92549 0.94407 0.95112 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.59 71.98 0.62 -4.73 16 2 C 0.09 3.42 0.84 -10.13 -0.01 3.41 16 3 C -0.03 -0.83 5.09 29.85 0.15 -0.67 16 4 C 0.00 -0.10 5.31 24.83 0.13 0.04 16 5 C -0.22 -8.64 10.74 22.19 0.24 -8.40 16 6 C -0.23 -7.80 10.91 22.19 0.24 -7.56 16 7 C -0.05 -1.51 12.09 66.97 0.81 -0.70 16 8 O -0.19 -6.34 10.05 -2.50 -0.03 -6.37 16 9 C -0.13 -4.21 6.07 32.15 0.20 -4.01 16 10 C -0.14 -5.37 5.69 31.95 0.18 -5.19 16 11 C 0.22 10.57 0.82 -11.07 -0.01 10.56 16 12 C -0.13 -6.36 8.50 71.98 0.61 -5.75 16 13 C -0.55 -30.31 8.22 25.60 0.21 -30.10 16 14 H 0.05 2.64 7.52 -2.91 -0.02 2.62 16 15 C 0.04 2.04 5.26 84.65 0.45 2.49 16 16 N -0.88 -52.17 10.93 21.45 0.23 -51.93 16 17 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 O -0.36 -18.06 9.21 -148.98 -1.37 -19.43 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.03 1.33 6.77 -2.39 -0.02 1.32 16 24 H 0.04 1.75 7.49 -2.38 -0.02 1.73 16 25 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.13 5.36 8.06 -2.91 -0.02 5.34 16 28 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.24 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 31 H 0.08 2.38 8.06 -2.39 -0.02 2.36 16 32 H 0.07 2.58 7.82 -2.39 -0.02 2.56 16 33 H 0.06 2.26 7.32 -2.38 -0.02 2.24 16 34 H 0.06 3.10 6.04 -2.39 -0.01 3.09 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.06 301.43 5.72 -61.34 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.04 Total: 20.13 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 3.82 Total: -50.63 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.23 Total: -51.93 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.40 Total: -25.80 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.06 5.72 -61.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.306 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds