Wall clock time and date at job start Mon Mar 30 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.89345 * 2 1 4 4 H 1.07993 * 120.00345 * 239.06946 * 3 2 1 5 5 C 1.37882 * 119.99898 * 59.06730 * 3 2 1 6 6 N 1.31513 * 119.99797 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 120.00063 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.46985 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46901 * 120.00275 * 7 5 3 10 10 H 1.48498 * 109.47393 * 240.00134 * 7 5 3 11 11 C 1.54382 * 109.83046 * 239.07282 * 2 1 3 12 12 C 1.55305 * 102.43395 * 219.02208 * 11 2 1 13 13 C 1.55503 * 100.69731 * 34.13038 * 12 11 2 14 14 C 1.53002 * 110.29481 * 82.50537 * 13 12 11 15 15 C 1.52995 * 110.36774 * 204.61167 * 13 12 11 16 16 C 1.50702 * 109.47212 * 182.25172 * 15 13 12 17 17 C 1.34514 * 125.78997 * 89.70801 * 16 15 13 18 18 C 1.41376 * 106.84242 * 179.89216 * 17 16 15 19 19 C 1.34513 * 106.83845 * 0.37611 * 18 17 16 20 20 O 1.34298 * 108.42486 * 359.77049 * 19 18 17 21 21 O 1.43232 * 109.83494 * 120.93361 * 2 1 3 22 22 H 1.09007 * 109.46675 * 180.93078 * 1 2 3 23 23 H 1.08997 * 109.47404 * 300.92842 * 1 2 3 24 24 H 1.08991 * 109.47455 * 60.93557 * 1 2 3 25 25 H 0.97008 * 120.00051 * 179.97438 * 6 5 3 26 26 H 1.09002 * 110.84829 * 337.31512 * 11 2 1 27 27 H 1.09001 * 110.84937 * 100.73612 * 11 2 1 28 28 H 1.09007 * 111.12701 * 152.15066 * 12 11 2 29 29 H 1.08995 * 111.13053 * 276.31315 * 12 11 2 30 30 H 1.08994 * 109.47281 * 302.79677 * 14 13 12 31 31 H 1.09005 * 109.46722 * 62.79220 * 14 13 12 32 32 H 1.08996 * 109.47078 * 182.79188 * 14 13 12 33 33 H 1.09004 * 109.46635 * 302.24771 * 15 13 12 34 34 H 1.08997 * 109.47601 * 62.24788 * 15 13 12 35 35 H 1.08006 * 126.58040 * 0.03243 * 17 16 15 36 36 H 1.08000 * 126.58588 * 180.16593 * 18 17 16 37 37 H 1.08005 * 125.79012 * 179.79608 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4171 0.0000 4 1 2.6786 1.7613 -0.8022 5 6 1.7002 2.2742 1.0243 6 7 0.9263 1.8549 2.0015 7 14 2.3364 4.0305 1.0247 8 1 3.1815 4.2511 -0.1763 9 1 1.1887 4.9727 1.0018 10 1 3.1442 4.2642 2.2486 11 6 2.0537 -0.7464 -1.2458 12 6 3.2756 -1.5218 -0.6820 13 6 2.7749 -1.8444 0.7545 14 6 1.8841 -3.0882 0.7391 15 6 3.9614 -2.0534 1.6975 16 6 3.4547 -2.4187 3.0690 17 6 3.2140 -3.6657 3.5123 18 6 2.7568 -3.5456 4.8447 19 6 2.7375 -2.2319 5.1331 20 8 3.1612 -1.5541 4.0539 21 8 2.0160 -0.6926 1.1557 22 1 -0.3633 -1.0276 0.0167 23 1 -0.3634 0.5282 0.8815 24 1 -0.3634 0.4992 -0.8982 25 1 0.6856 2.4578 2.7223 26 1 1.3012 -1.4348 -1.6304 27 1 2.3638 -0.0424 -2.0180 28 1 3.4597 -2.4327 -1.2516 29 1 4.1637 -0.8905 -0.6563 30 1 1.0502 -2.9295 0.0554 31 1 2.4665 -3.9482 0.4083 32 1 1.5010 -3.2732 1.7426 33 1 4.5908 -2.8577 1.3166 34 1 4.5437 -1.1341 1.7583 35 1 3.3468 -4.5829 2.9577 36 1 2.4738 -4.3533 5.5034 37 1 2.4334 -1.7960 6.0734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390516695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:24 Heat of formation + Delta-G solvation = -35.121708 kcal Electronic energy + Delta-G solvation = -19481.969497 eV Core-core repulsion = 16612.017834 eV Total energy + Delta-G solvation = -2869.951663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01968 -38.77703 -34.08463 -32.49240 -31.76909 -30.96346 -29.43446 -27.53610 -26.15438 -25.06166 -22.65742 -21.20370 -20.12928 -19.67690 -18.85025 -16.73197 -16.64475 -15.52036 -14.79655 -14.51789 -14.20630 -14.03041 -13.29186 -12.74096 -12.62925 -12.45759 -12.33601 -12.22579 -11.90972 -11.58280 -11.33337 -11.12319 -10.95505 -10.84018 -10.59606 -10.40428 -10.32867 -10.01284 -9.72087 -9.50495 -9.37233 -9.02884 -8.41850 -7.96248 -7.72184 -5.87349 -4.03609 2.30242 3.07110 3.32616 3.41154 3.43714 3.59679 4.47597 4.82773 5.21313 5.42517 5.44784 5.48535 5.54292 5.60985 5.68228 5.80942 6.01372 6.08510 6.17990 6.23722 6.26789 6.41274 6.43936 6.56171 6.58279 6.70086 6.78173 6.85821 6.97933 6.99365 7.03417 7.19320 7.43930 7.74011 7.84710 8.17627 8.45275 8.72610 9.14212 9.67262 11.14013 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021149 B = 0.008932 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.598853 B = 3133.987922 C = 3850.841797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.229 3.771 3 C -0.531 4.531 4 H 0.057 0.943 5 C 0.082 3.918 6 N -0.856 5.856 7 Si 0.884 3.116 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.284 1.284 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.102 3.898 14 C -0.159 4.159 15 C -0.036 4.036 16 C 0.032 3.968 17 C -0.234 4.234 18 C -0.221 4.221 19 C -0.049 4.049 20 O -0.154 6.154 21 O -0.334 6.334 22 H 0.010 0.990 23 H 0.089 0.911 24 H 0.033 0.967 25 H 0.257 0.743 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -9.665 0.814 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.192 3.808 3 C -0.569 4.569 4 H 0.075 0.925 5 C -0.123 4.123 6 N -0.493 5.493 7 Si 0.712 3.288 8 H -0.198 1.198 9 H -0.211 1.211 10 H -0.210 1.210 11 C -0.179 4.179 12 C -0.176 4.176 13 C 0.061 3.939 14 C -0.217 4.217 15 C -0.074 4.074 16 C -0.020 4.020 17 C -0.253 4.253 18 C -0.241 4.241 19 C -0.118 4.118 20 O -0.048 6.048 21 O -0.254 6.254 22 H 0.029 0.971 23 H 0.108 0.892 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.830 -9.223 1.166 10.054 hybrid contribution 0.196 0.645 0.012 0.674 sum 4.026 -8.578 1.178 9.549 Atomic orbital electron populations 1.22021 0.97755 0.97527 1.02522 1.19615 0.90733 0.90445 0.80032 1.21247 1.32336 0.94706 1.08627 0.92458 1.24982 0.94253 0.97891 0.95200 1.69971 1.34261 1.34740 1.10280 0.86694 0.78805 0.85374 0.77972 1.19835 1.21071 1.20992 1.23191 0.96042 0.98340 1.00329 1.23228 0.99353 0.99386 0.95604 1.22111 0.90495 0.89524 0.91736 1.22271 1.00032 0.96969 1.02413 1.20347 0.97576 1.02856 0.86587 1.22334 1.01417 0.87477 0.90736 1.21403 1.10191 0.97358 0.96363 1.21659 1.08440 0.96610 0.97356 1.23900 1.04829 0.91436 0.91614 1.84171 1.63518 1.37123 1.20007 1.88854 1.68877 1.35817 1.31814 0.97082 0.89191 0.94753 0.93267 0.93156 0.91481 0.92126 0.90923 0.92611 0.93295 0.92028 0.89054 0.89466 0.84267 0.84301 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.52 37.16 0.32 -3.18 16 2 C 0.23 5.73 0.82 -91.05 -0.07 5.65 16 3 C -0.53 -14.64 8.23 -34.44 -0.28 -14.92 16 4 H 0.06 1.56 7.48 -52.49 -0.39 1.16 16 5 C 0.08 2.30 5.26 -17.82 -0.09 2.20 16 6 N -0.86 -24.96 10.92 55.43 0.61 -24.36 16 7 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 8 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 C -0.14 -2.92 5.67 -24.78 -0.14 -3.06 16 12 C -0.14 -2.51 6.09 -24.18 -0.15 -2.66 16 13 C 0.10 2.02 0.86 -89.29 -0.08 1.94 16 14 C -0.16 -2.81 8.29 37.16 0.31 -2.50 16 15 C -0.04 -0.64 5.12 -27.88 -0.14 -0.79 16 16 C 0.03 0.59 5.64 -35.62 -0.20 0.39 16 17 C -0.23 -3.80 9.32 -39.71 -0.37 -4.18 16 18 C -0.22 -3.41 10.91 -39.71 -0.43 -3.84 16 19 C -0.05 -0.82 12.09 29.42 0.36 -0.46 16 20 O -0.15 -3.18 10.65 5.72 0.06 -3.12 16 21 O -0.33 -8.48 9.37 -35.23 -0.33 -8.81 16 22 H 0.01 0.24 8.03 -51.92 -0.42 -0.18 16 23 H 0.09 2.50 6.01 -51.93 -0.31 2.18 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.05 0.96 7.48 -51.93 -0.39 0.57 16 27 H 0.07 1.37 7.61 -51.93 -0.40 0.97 16 28 H 0.06 0.91 8.05 -51.93 -0.42 0.50 16 29 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.05 1.01 7.34 -51.93 -0.38 0.63 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.15 6.34 -51.93 -0.33 0.82 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.19 2.47 8.06 -52.48 -0.42 2.04 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -31.16 300.06 -6.69 -37.85 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.55 Total: 2.88 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.98 Total: -25.40 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.61 Total: -24.36 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.27 Total: -11.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.16 -6.69 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.728 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds