Wall clock time and date at job start Mon Mar 30 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.89345 * 2 1 4 4 H 1.07993 * 120.00345 * 239.06946 * 3 2 1 5 5 C 1.37882 * 119.99898 * 59.06730 * 3 2 1 6 6 N 1.31513 * 119.99797 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 120.00063 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.46985 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46901 * 120.00275 * 7 5 3 10 10 H 1.48498 * 109.47393 * 240.00134 * 7 5 3 11 11 C 1.54382 * 109.83046 * 239.07282 * 2 1 3 12 12 C 1.55305 * 102.43395 * 219.02208 * 11 2 1 13 13 C 1.55503 * 100.69731 * 34.13038 * 12 11 2 14 14 C 1.53002 * 110.29481 * 82.50537 * 13 12 11 15 15 C 1.52995 * 110.36774 * 204.61167 * 13 12 11 16 16 C 1.50702 * 109.47212 * 182.25172 * 15 13 12 17 17 C 1.34514 * 125.78997 * 89.70801 * 16 15 13 18 18 C 1.41376 * 106.84242 * 179.89216 * 17 16 15 19 19 C 1.34513 * 106.83845 * 0.37611 * 18 17 16 20 20 O 1.34298 * 108.42486 * 359.77049 * 19 18 17 21 21 O 1.43232 * 109.83494 * 120.93361 * 2 1 3 22 22 H 1.09007 * 109.46675 * 180.93078 * 1 2 3 23 23 H 1.08997 * 109.47404 * 300.92842 * 1 2 3 24 24 H 1.08991 * 109.47455 * 60.93557 * 1 2 3 25 25 H 0.97008 * 120.00051 * 179.97438 * 6 5 3 26 26 H 1.09002 * 110.84829 * 337.31512 * 11 2 1 27 27 H 1.09001 * 110.84937 * 100.73612 * 11 2 1 28 28 H 1.09007 * 111.12701 * 152.15066 * 12 11 2 29 29 H 1.08995 * 111.13053 * 276.31315 * 12 11 2 30 30 H 1.08994 * 109.47281 * 302.79677 * 14 13 12 31 31 H 1.09005 * 109.46722 * 62.79220 * 14 13 12 32 32 H 1.08996 * 109.47078 * 182.79188 * 14 13 12 33 33 H 1.09004 * 109.46635 * 302.24771 * 15 13 12 34 34 H 1.08997 * 109.47601 * 62.24788 * 15 13 12 35 35 H 1.08006 * 126.58040 * 0.03243 * 17 16 15 36 36 H 1.08000 * 126.58588 * 180.16593 * 18 17 16 37 37 H 1.08005 * 125.79012 * 179.79608 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4171 0.0000 4 1 2.6786 1.7613 -0.8022 5 6 1.7002 2.2742 1.0243 6 7 0.9263 1.8549 2.0015 7 14 2.3364 4.0305 1.0247 8 1 3.1815 4.2511 -0.1763 9 1 1.1887 4.9727 1.0018 10 1 3.1442 4.2642 2.2486 11 6 2.0537 -0.7464 -1.2458 12 6 3.2756 -1.5218 -0.6820 13 6 2.7749 -1.8444 0.7545 14 6 1.8841 -3.0882 0.7391 15 6 3.9614 -2.0534 1.6975 16 6 3.4547 -2.4187 3.0690 17 6 3.2140 -3.6657 3.5123 18 6 2.7568 -3.5456 4.8447 19 6 2.7375 -2.2319 5.1331 20 8 3.1612 -1.5541 4.0539 21 8 2.0160 -0.6926 1.1557 22 1 -0.3633 -1.0276 0.0167 23 1 -0.3634 0.5282 0.8815 24 1 -0.3634 0.4992 -0.8982 25 1 0.6856 2.4578 2.7223 26 1 1.3012 -1.4348 -1.6304 27 1 2.3638 -0.0424 -2.0180 28 1 3.4597 -2.4327 -1.2516 29 1 4.1637 -0.8905 -0.6563 30 1 1.0502 -2.9295 0.0554 31 1 2.4665 -3.9482 0.4083 32 1 1.5010 -3.2732 1.7426 33 1 4.5908 -2.8577 1.3166 34 1 4.5437 -1.1341 1.7583 35 1 3.3468 -4.5829 2.9577 36 1 2.4738 -4.3533 5.5034 37 1 2.4334 -1.7960 6.0734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390516695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:24 Heat of formation + Delta-G solvation = -53.472301 kcal Electronic energy + Delta-G solvation = -19482.765238 eV Core-core repulsion = 16612.017834 eV Total energy + Delta-G solvation = -2870.747404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.33903 -40.42707 -35.79490 -34.08698 -33.36029 -32.66766 -31.01207 -29.09653 -27.52874 -27.13383 -24.25149 -22.48814 -21.50278 -21.42853 -20.40468 -18.62560 -17.98415 -16.99577 -16.58133 -16.27562 -15.75906 -15.53098 -14.90986 -14.52540 -14.21417 -13.89551 -13.56680 -13.52894 -13.39974 -13.22922 -13.03984 -12.85494 -12.75499 -12.49523 -12.33822 -12.13692 -11.99888 -11.90254 -11.28680 -11.19729 -10.84294 -10.65611 -10.53388 -9.68757 -9.14183 -7.97662 -6.20144 0.99136 1.37793 1.40361 1.50240 1.84779 2.37557 2.44186 3.12603 3.52565 3.96028 3.98220 4.17560 4.21772 4.29851 4.31429 4.41346 4.60175 4.71148 4.75256 4.85099 4.94040 4.97153 5.03114 5.10534 5.12926 5.14300 5.18485 5.20677 5.40258 5.44740 5.54030 5.60239 5.72251 5.81846 6.15413 6.41058 6.45427 6.74823 7.27103 7.56414 9.02056 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021149 B = 0.008932 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.598853 B = 3133.987922 C = 3850.841797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.216 3.784 3 C -0.546 4.546 4 H 0.053 0.947 5 C 0.032 3.968 6 N -0.887 5.887 7 Si 0.942 3.058 8 H -0.265 1.265 9 H -0.280 1.280 10 H -0.287 1.287 11 C -0.138 4.138 12 C -0.128 4.128 13 C 0.089 3.911 14 C -0.150 4.150 15 C -0.034 4.034 16 C -0.004 4.004 17 C -0.222 4.222 18 C -0.218 4.218 19 C -0.070 4.070 20 O -0.200 6.200 21 O -0.372 6.372 22 H 0.024 0.976 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.254 0.746 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -11.712 0.094 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.178 3.822 3 C -0.584 4.584 4 H 0.071 0.929 5 C -0.170 4.170 6 N -0.524 5.524 7 Si 0.768 3.232 8 H -0.189 1.189 9 H -0.205 1.205 10 H -0.214 1.214 11 C -0.176 4.176 12 C -0.165 4.165 13 C 0.049 3.951 14 C -0.207 4.207 15 C -0.071 4.071 16 C -0.055 4.055 17 C -0.240 4.240 18 C -0.237 4.237 19 C -0.137 4.137 20 O -0.097 6.097 21 O -0.293 6.293 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.740 -11.279 0.430 12.242 hybrid contribution -0.095 1.217 0.271 1.250 sum 4.644 -10.063 0.701 11.105 Atomic orbital electron populations 1.21916 0.98488 0.97810 1.00981 1.19650 0.90403 0.90066 0.82064 1.21650 1.31805 0.96680 1.08224 0.92888 1.25696 0.94642 1.01519 0.95094 1.70133 1.35670 1.35764 1.10877 0.85775 0.78321 0.81214 0.77852 1.18927 1.20538 1.21382 1.23095 0.97529 0.98540 0.98394 1.23214 0.97766 1.00675 0.94861 1.22490 0.91065 0.88620 0.92958 1.22173 0.99842 0.97294 1.01400 1.20410 0.96955 1.03263 0.86425 1.22684 1.03437 0.88262 0.91071 1.21781 1.08251 0.97348 0.96661 1.22097 1.07219 0.96876 0.97535 1.24619 1.04875 0.92365 0.91802 1.84129 1.64769 1.39182 1.21582 1.88778 1.69891 1.38087 1.32504 0.95682 0.92634 0.94336 0.93719 0.91473 0.91715 0.87916 0.91570 0.93478 0.89271 0.93630 0.84842 0.91945 0.81414 0.81053 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 8.52 71.98 0.61 -6.16 16 2 C 0.22 10.85 0.82 -11.07 -0.01 10.84 16 3 C -0.55 -30.55 8.23 25.60 0.21 -30.34 16 4 H 0.05 2.91 7.48 -2.91 -0.02 2.89 16 5 C 0.03 1.86 5.26 84.66 0.45 2.30 16 6 N -0.89 -53.56 10.92 21.45 0.23 -53.33 16 7 Si 0.94 45.05 29.54 68.60 2.03 47.08 16 8 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 C -0.14 -5.48 5.67 31.86 0.18 -5.30 16 12 C -0.13 -4.31 6.09 32.25 0.20 -4.12 16 13 C 0.09 3.36 0.86 -9.93 -0.01 3.35 16 14 C -0.15 -4.86 8.29 71.98 0.60 -4.27 16 15 C -0.03 -1.14 5.12 29.85 0.15 -0.99 16 16 C 0.00 -0.16 5.64 24.83 0.14 -0.02 16 17 C -0.22 -6.64 9.32 22.19 0.21 -6.44 16 18 C -0.22 -6.24 10.91 22.19 0.24 -5.99 16 19 C -0.07 -2.28 12.09 66.97 0.81 -1.47 16 20 O -0.20 -8.45 10.65 -2.45 -0.03 -8.48 16 21 O -0.37 -19.13 9.37 -148.98 -1.40 -20.53 16 22 H 0.02 1.13 8.03 -2.38 -0.02 1.11 16 23 H 0.05 3.18 6.01 -2.39 -0.01 3.17 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 26 H 0.07 2.41 7.48 -2.39 -0.02 2.39 16 27 H 0.06 2.56 7.61 -2.39 -0.02 2.54 16 28 H 0.10 2.60 8.05 -2.38 -0.02 2.58 16 29 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 30 H 0.05 1.58 7.34 -2.39 -0.02 1.57 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.04 1.61 6.34 -2.39 -0.02 1.60 16 33 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.22 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -69.83 300.06 5.65 -64.18 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.04 Total: 19.68 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.78 Total: -48.61 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.23 Total: -53.33 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.42 Total: -29.01 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.83 5.65 -64.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.708 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds