Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.27600 * 2 1 4 4 H 1.07995 * 120.00167 * 121.81041 * 3 2 1 5 5 C 1.37879 * 119.99394 * 302.08739 * 3 2 1 6 6 N 1.31514 * 120.00338 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99424 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47474 * 90.00322 * 7 5 3 9 9 H 1.48507 * 109.46754 * 210.00056 * 7 5 3 10 10 H 1.48498 * 109.47278 * 329.99887 * 7 5 3 11 11 C 1.54951 * 110.30872 * 122.08599 * 2 1 3 12 12 C 1.55308 * 100.93819 * 82.57377 * 11 2 1 13 13 C 1.54383 * 102.25463 * 34.13293 * 12 11 2 14 14 C 1.52995 * 109.82659 * 98.24692 * 13 12 11 15 15 C 1.53005 * 109.82789 * 219.13009 * 13 12 11 16 16 C 1.50696 * 109.46796 * 185.00135 * 15 13 12 17 17 C 1.34510 * 125.79327 * 89.71731 * 16 15 13 18 18 C 1.41382 * 106.84492 * 179.88985 * 17 16 15 19 19 C 1.34512 * 106.84063 * 0.37058 * 18 17 16 20 20 O 1.34306 * 108.41960 * 359.77146 * 19 18 17 21 21 O 1.43232 * 107.58675 * 338.64191 * 13 12 11 22 22 H 1.09000 * 109.46624 * 59.30131 * 1 2 3 23 23 H 1.09003 * 109.47000 * 179.30117 * 1 2 3 24 24 H 1.08994 * 109.47348 * 299.30380 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 6 5 3 26 26 H 1.08999 * 111.12455 * 200.48650 * 11 2 1 27 27 H 1.08996 * 111.12542 * 324.60871 * 11 2 1 28 28 H 1.08995 * 110.84643 * 152.32766 * 12 11 2 29 29 H 1.09005 * 110.84678 * 275.94298 * 12 11 2 30 30 H 1.08996 * 109.47088 * 60.00528 * 14 13 12 31 31 H 1.09006 * 109.47055 * 179.97438 * 14 13 12 32 32 H 1.08993 * 109.47391 * 299.99541 * 14 13 12 33 33 H 1.09001 * 109.46888 * 304.99779 * 15 13 12 34 34 H 1.08995 * 109.46764 * 65.00180 * 15 13 12 35 35 H 1.08007 * 126.57724 * 0.02562 * 17 16 15 36 36 H 1.07999 * 126.57825 * 180.16210 * 18 17 16 37 37 H 1.07999 * 125.79192 * 179.75035 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4137 0.0000 4 1 2.7018 1.7494 0.7948 5 6 1.6961 2.2801 -1.0117 6 7 0.9003 1.8730 -1.9764 7 14 2.3440 4.0321 -1.0121 8 1 3.6280 4.0850 -1.7563 9 1 1.3550 4.9254 -1.6674 10 1 2.5639 4.4789 0.3869 11 6 2.0678 -0.7719 1.2312 12 6 1.9852 -2.2362 0.7201 13 6 2.3008 -2.0770 -0.7827 14 6 3.7737 -2.4007 -1.0408 15 6 1.4119 -3.0151 -1.6018 16 6 1.8101 -2.9438 -3.0535 17 6 2.7344 -3.7143 -3.6545 18 6 2.7844 -3.3130 -5.0092 19 6 1.8933 -2.3156 -5.1533 20 8 1.3061 -2.0963 -3.9655 21 8 2.0306 -0.7165 -1.1399 22 1 -0.3632 0.5247 -0.8837 23 1 -0.3633 -1.0276 -0.0125 24 1 -0.3634 0.5029 0.8961 25 1 0.6495 2.4827 -2.6879 26 1 3.0974 -0.4905 1.4523 27 1 1.4268 -0.6215 2.0999 28 1 2.7327 -2.8605 1.2095 29 1 0.9840 -2.6419 0.8654 30 1 3.9788 -3.4271 -0.7366 31 1 3.9899 -2.2870 -2.1031 32 1 4.4015 -1.7192 -0.4669 33 1 1.5329 -4.0367 -1.2417 34 1 0.3701 -2.7131 -1.4955 35 1 3.3238 -4.4920 -3.1915 36 1 3.4188 -3.7255 -5.7797 37 1 1.6856 -1.7816 -6.0687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390516697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -35.781786 kcal Electronic energy + Delta-G solvation = -19487.035046 eV Core-core repulsion = 16617.054760 eV Total energy + Delta-G solvation = -2869.980286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01050 -38.85797 -34.08776 -32.49801 -31.78026 -31.02543 -29.52451 -27.09802 -26.34155 -25.18150 -22.82428 -21.18814 -20.12438 -19.65173 -18.84816 -16.70247 -16.39718 -15.57957 -14.94075 -14.56445 -14.20000 -14.18024 -13.33413 -12.94233 -12.39445 -12.34142 -12.25912 -12.09667 -11.92612 -11.70881 -11.53727 -11.07639 -10.93241 -10.88808 -10.57360 -10.48488 -10.27519 -10.01178 -9.90344 -9.45783 -9.33855 -8.93519 -8.44826 -8.06975 -7.70042 -5.90488 -4.07133 2.31643 3.08256 3.33251 3.39931 3.42081 3.61011 4.45609 4.84352 5.22437 5.43087 5.43817 5.46487 5.50775 5.58212 5.71090 5.78302 6.00161 6.04816 6.17103 6.24862 6.30553 6.38651 6.44410 6.57025 6.61648 6.67212 6.78111 6.79160 6.93405 6.97005 7.04969 7.18431 7.39734 7.75260 7.82281 8.20018 8.41783 8.72328 9.11159 9.63330 11.10738 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.008780 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.780968 B = 3188.238925 C = 3919.632097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 C -0.524 4.524 4 H 0.060 0.940 5 C 0.081 3.919 6 N -0.856 5.856 7 Si 0.887 3.113 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.141 4.141 12 C -0.145 4.145 13 C 0.102 3.898 14 C -0.149 4.149 15 C -0.049 4.049 16 C 0.033 3.967 17 C -0.235 4.235 18 C -0.222 4.222 19 C -0.049 4.049 20 O -0.153 6.153 21 O -0.335 6.335 22 H 0.092 0.908 23 H 0.009 0.991 24 H 0.033 0.967 25 H 0.259 0.741 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -10.238 -0.923 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.194 3.806 3 C -0.562 4.562 4 H 0.078 0.922 5 C -0.125 4.125 6 N -0.492 5.492 7 Si 0.715 3.285 8 H -0.206 1.206 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.179 4.179 12 C -0.183 4.183 13 C 0.060 3.940 14 C -0.207 4.207 15 C -0.086 4.086 16 C -0.018 4.018 17 C -0.254 4.254 18 C -0.241 4.241 19 C -0.118 4.118 20 O -0.047 6.047 21 O -0.254 6.254 22 H 0.111 0.889 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.226 -9.868 -1.230 10.020 hybrid contribution 0.580 0.713 -0.088 0.923 sum 1.806 -9.155 -1.318 9.424 Atomic orbital electron populations 1.22134 0.98161 0.97459 1.02774 1.19885 0.90401 0.90409 0.79887 1.20981 1.31559 0.93879 1.09754 0.92192 1.25010 0.94186 0.98115 0.95146 1.69952 1.33137 1.34902 1.11214 0.86698 0.78857 0.84824 0.78168 1.20621 1.21207 1.19887 1.23297 1.01156 0.93322 1.00138 1.23125 1.00914 0.98733 0.95538 1.21804 0.93001 0.87272 0.91882 1.22105 0.96265 0.99683 1.02620 1.20686 1.01688 1.00254 0.86017 1.22299 0.96812 0.90930 0.91795 1.21398 1.03915 1.05565 0.94509 1.21658 1.03644 1.01389 0.97408 1.23897 0.98545 1.00860 0.88468 1.84177 1.53720 1.49491 1.17299 1.88911 1.84289 1.15893 1.36325 0.88934 0.97152 0.94826 0.93111 0.91850 0.92044 0.91758 0.91616 0.93284 0.92023 0.92401 0.89411 0.89905 0.84297 0.84320 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.61 37.16 0.32 -3.28 16 2 C 0.23 5.78 0.73 -90.74 -0.07 5.72 16 3 C -0.52 -14.57 8.30 -34.44 -0.29 -14.86 16 4 H 0.06 1.64 7.76 -52.49 -0.41 1.23 16 5 C 0.08 2.27 5.28 -17.82 -0.09 2.18 16 6 N -0.86 -24.86 10.98 55.43 0.61 -24.25 16 7 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 C -0.14 -2.93 6.01 -24.48 -0.15 -3.07 16 12 C -0.15 -2.56 5.71 -24.78 -0.14 -2.70 16 13 C 0.10 2.00 0.94 -89.89 -0.08 1.91 16 14 C -0.15 -2.68 8.15 37.16 0.30 -2.38 16 15 C -0.05 -0.86 4.94 -27.88 -0.14 -1.00 16 16 C 0.03 0.62 5.57 -35.63 -0.20 0.42 16 17 C -0.23 -3.86 9.22 -39.70 -0.37 -4.23 16 18 C -0.22 -3.46 10.91 -39.70 -0.43 -3.89 16 19 C -0.05 -0.83 12.09 29.41 0.36 -0.47 16 20 O -0.15 -3.17 10.65 5.68 0.06 -3.11 16 21 O -0.33 -8.51 9.54 -35.23 -0.34 -8.85 16 22 H 0.09 2.53 5.96 -51.93 -0.31 2.22 16 23 H 0.01 0.21 7.35 -51.93 -0.38 -0.17 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 27 H 0.06 1.18 8.03 -51.93 -0.42 0.77 16 28 H 0.06 0.97 7.82 -51.93 -0.41 0.56 16 29 H 0.07 1.07 7.51 -51.93 -0.39 0.68 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.54 8.00 -51.93 -0.42 1.12 16 35 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -31.07 300.15 -6.70 -37.76 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.56 Total: 3.11 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -0.98 Total: -25.65 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.61 Total: -24.25 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.28 Total: -11.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.07 -6.70 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.983 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds