Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.27600 * 2 1 4 4 H 1.07995 * 120.00167 * 121.81041 * 3 2 1 5 5 C 1.37879 * 119.99394 * 302.08739 * 3 2 1 6 6 N 1.31514 * 120.00338 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99424 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47474 * 90.00322 * 7 5 3 9 9 H 1.48507 * 109.46754 * 210.00056 * 7 5 3 10 10 H 1.48498 * 109.47278 * 329.99887 * 7 5 3 11 11 C 1.54951 * 110.30872 * 122.08599 * 2 1 3 12 12 C 1.55308 * 100.93819 * 82.57377 * 11 2 1 13 13 C 1.54383 * 102.25463 * 34.13293 * 12 11 2 14 14 C 1.52995 * 109.82659 * 98.24692 * 13 12 11 15 15 C 1.53005 * 109.82789 * 219.13009 * 13 12 11 16 16 C 1.50696 * 109.46796 * 185.00135 * 15 13 12 17 17 C 1.34510 * 125.79327 * 89.71731 * 16 15 13 18 18 C 1.41382 * 106.84492 * 179.88985 * 17 16 15 19 19 C 1.34512 * 106.84063 * 0.37058 * 18 17 16 20 20 O 1.34306 * 108.41960 * 359.77146 * 19 18 17 21 21 O 1.43232 * 107.58675 * 338.64191 * 13 12 11 22 22 H 1.09000 * 109.46624 * 59.30131 * 1 2 3 23 23 H 1.09003 * 109.47000 * 179.30117 * 1 2 3 24 24 H 1.08994 * 109.47348 * 299.30380 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 6 5 3 26 26 H 1.08999 * 111.12455 * 200.48650 * 11 2 1 27 27 H 1.08996 * 111.12542 * 324.60871 * 11 2 1 28 28 H 1.08995 * 110.84643 * 152.32766 * 12 11 2 29 29 H 1.09005 * 110.84678 * 275.94298 * 12 11 2 30 30 H 1.08996 * 109.47088 * 60.00528 * 14 13 12 31 31 H 1.09006 * 109.47055 * 179.97438 * 14 13 12 32 32 H 1.08993 * 109.47391 * 299.99541 * 14 13 12 33 33 H 1.09001 * 109.46888 * 304.99779 * 15 13 12 34 34 H 1.08995 * 109.46764 * 65.00180 * 15 13 12 35 35 H 1.08007 * 126.57724 * 0.02562 * 17 16 15 36 36 H 1.07999 * 126.57825 * 180.16210 * 18 17 16 37 37 H 1.07999 * 125.79192 * 179.75035 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4137 0.0000 4 1 2.7018 1.7494 0.7948 5 6 1.6961 2.2801 -1.0117 6 7 0.9003 1.8730 -1.9764 7 14 2.3440 4.0321 -1.0121 8 1 3.6280 4.0850 -1.7563 9 1 1.3550 4.9254 -1.6674 10 1 2.5639 4.4789 0.3869 11 6 2.0678 -0.7719 1.2312 12 6 1.9852 -2.2362 0.7201 13 6 2.3008 -2.0770 -0.7827 14 6 3.7737 -2.4007 -1.0408 15 6 1.4119 -3.0151 -1.6018 16 6 1.8101 -2.9438 -3.0535 17 6 2.7344 -3.7143 -3.6545 18 6 2.7844 -3.3130 -5.0092 19 6 1.8933 -2.3156 -5.1533 20 8 1.3061 -2.0963 -3.9655 21 8 2.0306 -0.7165 -1.1399 22 1 -0.3632 0.5247 -0.8837 23 1 -0.3633 -1.0276 -0.0125 24 1 -0.3634 0.5029 0.8961 25 1 0.6495 2.4827 -2.6879 26 1 3.0974 -0.4905 1.4523 27 1 1.4268 -0.6215 2.0999 28 1 2.7327 -2.8605 1.2095 29 1 0.9840 -2.6419 0.8654 30 1 3.9788 -3.4271 -0.7366 31 1 3.9899 -2.2870 -2.1031 32 1 4.4015 -1.7192 -0.4669 33 1 1.5329 -4.0367 -1.2417 34 1 0.3701 -2.7131 -1.4955 35 1 3.3238 -4.4920 -3.1915 36 1 3.4188 -3.7255 -5.7797 37 1 1.6856 -1.7816 -6.0687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390516697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = -54.121635 kcal Electronic energy + Delta-G solvation = -19487.830322 eV Core-core repulsion = 16617.054760 eV Total energy + Delta-G solvation = -2870.775561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.33866 -40.49597 -35.80351 -34.11609 -33.35169 -32.72198 -31.05914 -28.72452 -27.79782 -27.12905 -24.43107 -22.48349 -21.50902 -21.36892 -20.39451 -18.42740 -17.96810 -17.02623 -16.72525 -16.32202 -15.80121 -15.57441 -15.06818 -14.50885 -13.95725 -13.78860 -13.65475 -13.56613 -13.42036 -13.22532 -13.02159 -12.86285 -12.81864 -12.42479 -12.36623 -12.23918 -11.97458 -11.93162 -11.42391 -11.07687 -10.80973 -10.65052 -10.52995 -9.78319 -9.10834 -8.00349 -6.23848 0.99585 1.39008 1.40340 1.49588 1.84491 2.38132 2.43102 3.09570 3.56844 3.93734 4.01991 4.10959 4.23761 4.29452 4.30834 4.43601 4.55035 4.71726 4.74266 4.87371 4.90636 5.00791 5.01489 5.03572 5.11956 5.12990 5.17902 5.25221 5.35866 5.44681 5.53466 5.57260 5.70391 5.81756 6.20975 6.39506 6.45759 6.72304 7.26566 7.51795 8.98968 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.008780 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.780968 B = 3188.238925 C = 3919.632097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.217 3.783 3 C -0.545 4.545 4 H 0.054 0.946 5 C 0.032 3.968 6 N -0.885 5.885 7 Si 0.946 3.054 8 H -0.282 1.282 9 H -0.282 1.282 10 H -0.264 1.264 11 C -0.139 4.139 12 C -0.132 4.132 13 C 0.087 3.913 14 C -0.142 4.142 15 C -0.044 4.044 16 C -0.002 4.002 17 C -0.225 4.225 18 C -0.219 4.219 19 C -0.070 4.070 20 O -0.198 6.198 21 O -0.374 6.374 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.255 0.745 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -12.111 -0.335 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.179 3.821 3 C -0.583 4.583 4 H 0.073 0.927 5 C -0.171 4.171 6 N -0.522 5.522 7 Si 0.772 3.228 8 H -0.208 1.208 9 H -0.208 1.208 10 H -0.189 1.189 11 C -0.176 4.176 12 C -0.170 4.170 13 C 0.047 3.953 14 C -0.199 4.199 15 C -0.082 4.082 16 C -0.052 4.052 17 C -0.243 4.243 18 C -0.238 4.238 19 C -0.137 4.137 20 O -0.094 6.094 21 O -0.295 6.295 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.370 -11.751 -0.629 12.004 hybrid contribution 0.256 1.245 -0.310 1.309 sum 2.626 -10.506 -0.939 10.869 Atomic orbital electron populations 1.21982 0.98459 0.98099 1.01070 1.19926 0.90320 0.89959 0.81867 1.21418 1.31244 0.96128 1.09499 0.92747 1.25738 0.94540 1.01787 0.94988 1.70120 1.34422 1.35896 1.11767 0.85771 0.78011 0.80613 0.78452 1.20817 1.20797 1.18866 1.23185 1.00646 0.95023 0.98777 1.23106 1.02960 0.97039 0.93861 1.22171 0.94425 0.85111 0.93613 1.22053 0.94820 1.01767 1.01298 1.20712 0.99970 1.01820 0.85652 1.22693 0.98412 0.91846 0.92294 1.21777 1.02734 1.05114 0.94711 1.22093 1.03202 1.00557 0.97974 1.24607 0.98908 1.01826 0.88375 1.84138 1.55344 1.50992 1.18929 1.88820 1.84578 1.19089 1.36965 0.92476 0.95185 0.94567 0.93540 0.92522 0.90869 0.88302 0.90132 0.89117 0.93793 0.93858 0.85277 0.91845 0.81521 0.81138 0.76567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 8.61 71.98 0.62 -6.23 16 2 C 0.22 10.92 0.73 -10.87 -0.01 10.91 16 3 C -0.55 -30.89 8.30 25.60 0.21 -30.68 16 4 H 0.05 3.03 7.76 -2.91 -0.02 3.00 16 5 C 0.03 1.82 5.28 84.66 0.45 2.27 16 6 N -0.88 -53.24 10.98 21.45 0.24 -53.00 16 7 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 8 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 11 C -0.14 -5.55 6.01 32.05 0.19 -5.36 16 12 C -0.13 -4.25 5.71 31.86 0.18 -4.07 16 13 C 0.09 3.28 0.94 -10.32 -0.01 3.27 16 14 C -0.14 -4.78 8.15 71.98 0.59 -4.19 16 15 C -0.04 -1.49 4.94 29.85 0.15 -1.34 16 16 C 0.00 -0.08 5.57 24.83 0.14 0.06 16 17 C -0.22 -6.84 9.22 22.19 0.20 -6.64 16 18 C -0.22 -6.38 10.91 22.19 0.24 -6.14 16 19 C -0.07 -2.32 12.09 66.97 0.81 -1.51 16 20 O -0.20 -8.38 10.65 -2.58 -0.03 -8.40 16 21 O -0.37 -19.26 9.54 -148.98 -1.42 -20.68 16 22 H 0.06 3.24 5.96 -2.39 -0.01 3.22 16 23 H 0.03 1.30 7.35 -2.39 -0.02 1.28 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 27 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 28 H 0.10 2.50 7.82 -2.39 -0.02 2.49 16 29 H 0.08 2.35 7.51 -2.38 -0.02 2.33 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.61 6.16 -2.38 -0.01 1.60 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.06 2.33 8.00 -2.39 -0.02 2.31 16 35 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 Total: -1.00 -69.83 300.15 5.62 -64.21 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.04 Total: 20.50 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 3.76 Total: -49.65 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.45 Total: -29.08 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.83 5.62 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390516697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.087 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds