Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78762 * 2 1 4 4 C 1.41385 * 106.83926 * 179.76997 * 3 2 1 5 5 C 1.50699 * 126.58199 * 180.18893 * 4 3 2 6 6 C 1.52999 * 109.82299 * 119.32774 * 5 4 3 7 7 C 1.54384 * 109.83295 * 240.21276 * 5 4 3 8 8 C 1.55304 * 102.25086 * 140.86785 * 7 5 4 9 9 C 1.54943 * 100.94523 * 325.87099 * 8 7 5 10 10 H 1.09001 * 110.30931 * 277.52900 * 9 8 7 11 11 C 1.50697 * 110.31330 * 155.45829 * 9 8 7 12 12 H 1.08004 * 120.00067 * 359.97438 * 11 9 8 13 13 C 1.37873 * 120.00458 * 180.02562 * 11 9 8 14 14 N 1.31523 * 120.00409 * 179.97438 * 13 11 9 15 15 Si 1.86801 * 119.99985 * 359.97438 * 13 11 9 16 16 H 1.48495 * 109.47243 * 90.00221 * 15 13 11 17 17 H 1.48496 * 109.47298 * 210.00448 * 15 13 11 18 18 H 1.48502 * 109.46870 * 330.00459 * 15 13 11 19 19 O 1.43234 * 109.83099 * 358.44175 * 5 4 3 20 20 C 1.34515 * 106.83992 * 0.23220 * 4 3 2 21 21 C 1.50704 * 125.79063 * 180.02562 * 20 4 3 22 22 O 1.34305 * 125.78789 * 180.16213 * 2 1 3 23 23 H 1.09001 * 109.47378 * 89.99412 * 1 2 3 24 24 H 1.08999 * 109.47456 * 209.99695 * 1 2 3 25 25 H 1.09008 * 109.47140 * 329.99897 * 1 2 3 26 26 H 1.08002 * 126.58498 * 0.04167 * 3 2 1 27 27 H 1.09008 * 109.47015 * 60.70075 * 6 5 4 28 28 H 1.09002 * 109.47298 * 180.70249 * 6 5 4 29 29 H 1.09001 * 109.47211 * 300.70205 * 6 5 4 30 30 H 1.08998 * 110.85091 * 259.06208 * 7 5 4 31 31 H 1.09001 * 110.84090 * 22.48297 * 7 5 4 32 32 H 1.09003 * 111.12230 * 83.78637 * 8 7 5 33 33 H 1.09000 * 111.12840 * 207.90801 * 8 7 5 34 34 H 0.97000 * 119.99621 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46823 * 89.99453 * 21 20 4 36 36 H 1.08996 * 109.46985 * 209.99865 * 21 20 4 37 37 H 1.09000 * 109.47266 * 329.99985 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0054 5 6 4.8732 1.4850 0.0115 6 6 5.6945 1.1964 1.2697 7 6 5.7188 1.1876 -1.2455 8 6 6.2301 2.5999 -1.6404 9 6 5.0217 3.4767 -1.2260 10 1 4.2619 3.4676 -2.0076 11 6 5.4701 4.8888 -0.9502 12 1 6.5117 5.1547 -1.0543 13 6 4.5509 5.8410 -0.5638 14 7 4.9424 7.0732 -0.3226 15 14 2.7495 5.3810 -0.3830 16 1 2.4917 4.9267 1.0070 17 1 1.9040 6.5647 -0.6817 18 1 2.4207 4.2860 -1.3307 19 8 4.5117 2.8704 -0.0257 20 6 3.5814 -0.7122 0.0032 21 6 4.7706 -1.6379 0.0078 22 8 2.2924 -1.0895 -0.0031 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.9666 2.1205 0.0006 27 1 5.9903 0.1473 1.2778 28 1 6.5850 1.8251 1.2744 29 1 5.0934 1.4114 2.1532 30 1 6.5516 0.5266 -1.0054 31 1 5.1017 0.7601 -2.0358 32 1 7.1221 2.8674 -1.0739 33 1 6.4144 2.6654 -2.7127 34 1 4.2955 7.7432 -0.0512 35 1 5.0521 -1.8625 1.0366 36 1 4.5131 -2.5626 -0.5086 37 1 5.6065 -1.1581 -0.5011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393775190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -40.522790 kcal Electronic energy + Delta-G solvation = -19236.566033 eV Core-core repulsion = 16366.380162 eV Total energy + Delta-G solvation = -2870.185871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36494 -38.76568 -33.96661 -32.83098 -32.33874 -31.14084 -30.03080 -29.37883 -26.86999 -24.67395 -23.43729 -21.55330 -20.77856 -20.12628 -18.40889 -16.83221 -16.28232 -16.04585 -15.38109 -14.76999 -14.30199 -13.63888 -13.35734 -13.32146 -13.17308 -12.89195 -12.69259 -12.58263 -12.40029 -12.22425 -12.20480 -11.94056 -11.60339 -11.31901 -10.87030 -10.67461 -10.46835 -10.30620 -9.89951 -9.66565 -9.43131 -9.15770 -8.60875 -8.29634 -7.86194 -6.09693 -4.17896 1.95870 2.93836 3.14149 3.41245 3.47281 3.55870 4.48403 4.67259 4.84665 5.05421 5.24922 5.25387 5.32674 5.36219 5.48155 5.49792 5.51865 5.56422 5.71998 5.76710 5.84144 5.94759 6.03539 6.15012 6.19490 6.37465 6.44060 6.46324 6.50364 6.59735 6.69551 6.78506 6.92950 7.25204 7.47241 7.64383 8.36086 8.45004 8.91864 9.54212 11.00853 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.008995 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.589774 B = 3112.095822 C = 4014.258231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.037 4.037 3 C -0.177 4.177 4 C -0.159 4.159 5 C 0.170 3.830 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.134 4.134 9 C 0.169 3.831 10 H 0.031 0.969 11 C -0.517 4.517 12 H 0.079 0.921 13 C 0.083 3.917 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.298 1.298 18 H -0.264 1.264 19 O -0.371 6.371 20 C -0.028 4.028 21 C -0.071 4.071 22 O -0.179 6.179 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.265 0.735 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 -16.719 0.223 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.197 4.197 4 C -0.161 4.161 5 C 0.129 3.871 6 C -0.202 4.202 7 C -0.182 4.182 8 C -0.172 4.172 9 C 0.114 3.886 10 H 0.049 0.951 11 C -0.554 4.554 12 H 0.097 0.903 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.226 1.226 18 H -0.189 1.189 19 O -0.291 6.291 20 C -0.078 4.078 21 C -0.128 4.128 22 O -0.077 6.077 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.164 0.836 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.015 -16.730 0.425 17.210 hybrid contribution -0.850 0.049 0.048 0.853 sum -4.865 -16.682 0.473 17.383 Atomic orbital electron populations 1.20213 0.85450 1.03565 1.03097 1.22270 0.93706 0.84170 1.08527 1.21504 0.92202 0.99487 1.06472 1.20669 0.96321 0.92797 1.06289 1.20060 0.88398 0.84048 0.94598 1.22060 1.00151 1.00421 0.97580 1.23185 0.98945 0.98810 0.97227 1.23127 1.00365 0.92866 1.00821 1.21124 0.90432 0.92900 0.84108 0.95148 1.21049 0.96776 0.89857 1.47704 0.90286 1.25049 0.99619 0.94476 0.92931 1.69931 1.35253 1.02485 1.45428 0.86494 0.84276 0.77065 0.79776 1.19846 1.22577 1.18868 1.88665 1.77485 1.17760 1.45208 1.21930 0.83136 0.93913 1.08807 1.20364 0.91902 0.97397 1.03091 1.83870 1.16202 1.34930 1.72732 0.90541 0.91012 0.89597 0.83610 0.92588 0.91581 0.92467 0.91126 0.91518 0.90908 0.91496 0.92529 0.90490 0.91114 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.39 16 2 C -0.04 -0.61 7.32 -35.62 -0.26 -0.87 16 3 C -0.18 -3.39 10.19 -39.70 -0.40 -3.80 16 4 C -0.16 -2.96 4.70 -104.74 -0.49 -3.45 16 5 C 0.17 3.28 0.99 -91.05 -0.09 3.19 16 6 C -0.14 -2.46 8.58 37.16 0.32 -2.14 16 7 C -0.14 -2.45 4.76 -24.78 -0.12 -2.57 16 8 C -0.13 -2.67 6.53 -24.48 -0.16 -2.83 16 9 C 0.17 4.17 2.66 -26.86 -0.07 4.10 16 10 H 0.03 0.78 7.09 -51.93 -0.37 0.42 16 11 C -0.52 -14.90 9.38 -34.44 -0.32 -15.22 16 12 H 0.08 2.41 8.00 -52.48 -0.42 1.99 16 13 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 14 N -0.89 -27.70 13.96 55.43 0.77 -26.92 16 15 Si 0.90 23.33 26.46 -169.99 -4.50 18.83 16 16 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 18 H -0.26 -6.67 6.49 56.52 0.37 -6.30 16 19 O -0.37 -9.00 7.99 -35.23 -0.28 -9.28 16 20 C -0.03 -0.45 7.17 -35.62 -0.26 -0.71 16 21 C -0.07 -0.81 8.80 36.01 0.32 -0.50 16 22 O -0.18 -2.92 10.65 5.70 0.06 -2.86 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.15 3.01 8.01 -52.49 -0.42 2.59 16 27 H 0.06 0.76 6.21 -51.92 -0.32 0.43 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.98 6.90 -51.93 -0.36 0.63 16 31 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 32 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.97 5.51 -51.93 -0.29 0.69 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -32.91 297.52 -6.26 -39.17 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.54 Total: -0.61 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -1.26 Total: -22.80 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.22 Total: -12.15 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.50 Total: 18.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.91 -6.26 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.350 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds