Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78762 * 2 1 4 4 C 1.41385 * 106.83926 * 179.76997 * 3 2 1 5 5 C 1.50699 * 126.58199 * 180.18893 * 4 3 2 6 6 C 1.52999 * 109.82299 * 119.32774 * 5 4 3 7 7 C 1.54384 * 109.83295 * 240.21276 * 5 4 3 8 8 C 1.55304 * 102.25086 * 140.86785 * 7 5 4 9 9 C 1.54943 * 100.94523 * 325.87099 * 8 7 5 10 10 H 1.09001 * 110.30931 * 277.52900 * 9 8 7 11 11 C 1.50697 * 110.31330 * 155.45829 * 9 8 7 12 12 H 1.08004 * 120.00067 * 359.97438 * 11 9 8 13 13 C 1.37873 * 120.00458 * 180.02562 * 11 9 8 14 14 N 1.31523 * 120.00409 * 179.97438 * 13 11 9 15 15 Si 1.86801 * 119.99985 * 359.97438 * 13 11 9 16 16 H 1.48495 * 109.47243 * 90.00221 * 15 13 11 17 17 H 1.48496 * 109.47298 * 210.00448 * 15 13 11 18 18 H 1.48502 * 109.46870 * 330.00459 * 15 13 11 19 19 O 1.43234 * 109.83099 * 358.44175 * 5 4 3 20 20 C 1.34515 * 106.83992 * 0.23220 * 4 3 2 21 21 C 1.50704 * 125.79063 * 180.02562 * 20 4 3 22 22 O 1.34305 * 125.78789 * 180.16213 * 2 1 3 23 23 H 1.09001 * 109.47378 * 89.99412 * 1 2 3 24 24 H 1.08999 * 109.47456 * 209.99695 * 1 2 3 25 25 H 1.09008 * 109.47140 * 329.99897 * 1 2 3 26 26 H 1.08002 * 126.58498 * 0.04167 * 3 2 1 27 27 H 1.09008 * 109.47015 * 60.70075 * 6 5 4 28 28 H 1.09002 * 109.47298 * 180.70249 * 6 5 4 29 29 H 1.09001 * 109.47211 * 300.70205 * 6 5 4 30 30 H 1.08998 * 110.85091 * 259.06208 * 7 5 4 31 31 H 1.09001 * 110.84090 * 22.48297 * 7 5 4 32 32 H 1.09003 * 111.12230 * 83.78637 * 8 7 5 33 33 H 1.09000 * 111.12840 * 207.90801 * 8 7 5 34 34 H 0.97000 * 119.99621 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46823 * 89.99453 * 21 20 4 36 36 H 1.08996 * 109.46985 * 209.99865 * 21 20 4 37 37 H 1.09000 * 109.47266 * 329.99985 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0054 5 6 4.8732 1.4850 0.0115 6 6 5.6945 1.1964 1.2697 7 6 5.7188 1.1876 -1.2455 8 6 6.2301 2.5999 -1.6404 9 6 5.0217 3.4767 -1.2260 10 1 4.2619 3.4676 -2.0076 11 6 5.4701 4.8888 -0.9502 12 1 6.5117 5.1547 -1.0543 13 6 4.5509 5.8410 -0.5638 14 7 4.9424 7.0732 -0.3226 15 14 2.7495 5.3810 -0.3830 16 1 2.4917 4.9267 1.0070 17 1 1.9040 6.5647 -0.6817 18 1 2.4207 4.2860 -1.3307 19 8 4.5117 2.8704 -0.0257 20 6 3.5814 -0.7122 0.0032 21 6 4.7706 -1.6379 0.0078 22 8 2.2924 -1.0895 -0.0031 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.9666 2.1205 0.0006 27 1 5.9903 0.1473 1.2778 28 1 6.5850 1.8251 1.2744 29 1 5.0934 1.4114 2.1532 30 1 6.5516 0.5266 -1.0054 31 1 5.1017 0.7601 -2.0358 32 1 7.1221 2.8674 -1.0739 33 1 6.4144 2.6654 -2.7127 34 1 4.2955 7.7432 -0.0512 35 1 5.0521 -1.8625 1.0366 36 1 4.5131 -2.5626 -0.5086 37 1 5.6065 -1.1581 -0.5011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393775190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -61.450782 kcal Electronic energy + Delta-G solvation = -19237.473539 eV Core-core repulsion = 16366.380162 eV Total energy + Delta-G solvation = -2871.093377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.62119 -40.39405 -35.56692 -34.40026 -33.97478 -32.72801 -31.53787 -30.36194 -28.69613 -25.91741 -24.99446 -23.00517 -22.24286 -21.80042 -19.81177 -18.99290 -17.54869 -17.26297 -17.03037 -16.69446 -15.80659 -15.09046 -14.87299 -14.67476 -14.39513 -14.27748 -14.18782 -13.81125 -13.65016 -13.59959 -13.48259 -13.28869 -12.91598 -12.86032 -12.58584 -12.40783 -12.11441 -11.84106 -11.73523 -11.47965 -11.30674 -10.89690 -10.55862 -10.13748 -9.06522 -8.39943 -6.50822 0.74923 1.26966 1.35016 1.44665 1.59940 1.99932 2.31205 2.80191 3.39167 3.67289 3.81346 3.90996 4.07254 4.09507 4.28243 4.42232 4.46018 4.48090 4.59479 4.65234 4.71412 4.73010 4.77813 4.87503 4.90291 4.96170 5.00233 5.07323 5.18533 5.21880 5.34614 5.39753 5.49619 5.53913 5.61171 6.17184 6.21000 6.49647 6.74720 7.25305 8.74337 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.008995 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.589774 B = 3112.095822 C = 4014.258231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.025 4.025 3 C -0.224 4.224 4 C -0.193 4.193 5 C 0.157 3.843 6 C -0.141 4.141 7 C -0.128 4.128 8 C -0.131 4.131 9 C 0.168 3.832 10 H 0.018 0.982 11 C -0.523 4.523 12 H 0.049 0.951 13 C 0.031 3.969 14 N -0.936 5.936 15 Si 0.955 3.045 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.257 1.257 19 O -0.400 6.400 20 C -0.014 4.014 21 C -0.074 4.074 22 O -0.179 6.179 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -20.310 0.022 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.244 4.244 4 C -0.194 4.194 5 C 0.117 3.883 6 C -0.198 4.198 7 C -0.165 4.165 8 C -0.169 4.169 9 C 0.112 3.888 10 H 0.035 0.965 11 C -0.561 4.561 12 H 0.067 0.933 13 C -0.168 4.168 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.182 1.182 19 O -0.321 6.321 20 C -0.063 4.063 21 C -0.130 4.130 22 O -0.077 6.077 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.465 -20.336 0.217 20.821 hybrid contribution -0.676 1.108 0.135 1.305 sum -5.141 -19.228 0.351 19.907 Atomic orbital electron populations 1.20426 0.82376 1.05010 1.04603 1.22875 0.95358 0.83213 1.05972 1.21491 0.93718 0.99167 1.10006 1.20663 0.95634 0.94075 1.09036 1.20415 0.89673 0.81591 0.96615 1.22064 0.99051 1.02852 0.95858 1.23160 0.99775 0.97434 0.96181 1.23055 0.98132 0.93917 1.01761 1.20916 0.92065 0.91728 0.84071 0.96455 1.21362 0.95413 0.92573 1.46719 0.93288 1.25807 1.03529 0.94458 0.93055 1.70036 1.36622 1.03533 1.47390 0.85559 0.79944 0.77035 0.79243 1.20675 1.21497 1.18168 1.88548 1.77919 1.21087 1.44524 1.22597 0.83973 0.93594 1.06147 1.20623 0.90053 0.97455 1.04892 1.83917 1.16576 1.34784 1.72393 0.88875 0.88668 0.89044 0.86368 0.88426 0.92415 0.94051 0.87007 0.90800 0.91388 0.89880 0.92269 0.88458 0.88829 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.42 71.24 0.74 -0.65 16 2 C -0.02 -0.75 7.32 24.83 0.18 -0.57 16 3 C -0.22 -8.52 10.19 22.19 0.23 -8.30 16 4 C -0.19 -6.86 4.70 -19.94 -0.09 -6.95 16 5 C 0.16 5.84 0.99 -11.07 -0.01 5.82 16 6 C -0.14 -4.52 8.58 71.98 0.62 -3.90 16 7 C -0.13 -3.99 4.76 31.86 0.15 -3.84 16 8 C -0.13 -5.08 6.53 32.05 0.21 -4.87 16 9 C 0.17 8.37 2.66 30.51 0.08 8.46 16 10 H 0.02 0.92 7.09 -2.39 -0.02 0.90 16 11 C -0.52 -31.24 9.38 25.60 0.24 -31.00 16 12 H 0.05 3.13 8.00 -2.91 -0.02 3.11 16 13 C 0.03 1.92 5.47 84.65 0.46 2.39 16 14 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 15 Si 0.96 50.02 26.46 68.60 1.82 51.84 16 16 H -0.28 -14.89 7.11 99.48 0.71 -14.18 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.26 -13.02 6.49 99.48 0.65 -12.37 16 19 O -0.40 -19.62 7.99 -148.98 -1.19 -20.81 16 20 C -0.01 -0.39 7.17 24.83 0.18 -0.21 16 21 C -0.07 -1.32 8.80 71.24 0.63 -0.69 16 22 O -0.18 -5.30 10.65 -2.52 -0.03 -5.33 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.12 5.05 8.01 -2.91 -0.02 5.03 16 27 H 0.10 2.24 6.21 -2.38 -0.01 2.23 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 2.56 6.90 -2.39 -0.02 2.55 16 31 H 0.07 2.21 7.84 -2.39 -0.02 2.20 16 32 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.10 1.40 7.91 -2.39 -0.02 1.38 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.60 5.51 -2.39 -0.01 1.58 16 Total: -1.00 -74.85 297.52 5.50 -69.35 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.99 Total: 9.03 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 3.61 Total: -44.31 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.30 Total: -59.77 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.22 Total: -26.14 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.82 Total: 51.84 kcal Total: -74.85 5.50 -69.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.902 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds