Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.58166 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.86812 * 119.25876 * 5 4 3 7 7 C 1.54097 * 109.88087 * 240.26504 * 5 4 3 8 8 C 1.54813 * 104.18813 * 121.45141 * 7 5 4 9 9 C 1.54993 * 102.09146 * 20.88440 * 8 7 5 10 10 H 1.09002 * 110.62118 * 81.62774 * 9 8 7 11 11 C 1.50702 * 110.61751 * 204.47510 * 9 8 7 12 12 H 1.07998 * 119.99965 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00017 * 180.02562 * 11 9 8 14 14 N 1.31511 * 119.99993 * 180.02562 * 13 11 9 15 15 Si 1.86808 * 119.99828 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46828 * 90.00486 * 15 13 11 17 17 H 1.48499 * 109.46913 * 210.00450 * 15 13 11 18 18 H 1.48499 * 109.47337 * 330.00533 * 15 13 11 19 19 O 1.43742 * 109.87883 * 358.25111 * 5 4 3 20 20 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 21 21 C 1.50696 * 125.79261 * 180.02562 * 20 4 3 22 22 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 25 25 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 26 26 H 1.08007 * 126.58045 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47467 * 60.70287 * 6 5 4 28 28 H 1.09000 * 109.46920 * 180.70606 * 6 5 4 29 29 H 1.08997 * 109.46701 * 300.69811 * 6 5 4 30 30 H 1.09002 * 110.49185 * 240.12929 * 7 5 4 31 31 H 1.09003 * 110.48915 * 2.77647 * 7 5 4 32 32 H 1.09005 * 110.90404 * 139.07929 * 8 7 5 33 33 H 1.08990 * 110.90853 * 262.68098 * 8 7 5 34 34 H 0.97002 * 120.00055 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47537 * 179.97438 * 21 20 4 36 36 H 1.09000 * 109.47123 * 299.99999 * 21 20 4 37 37 H 1.08997 * 109.47126 * 59.99692 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0003 6 6 5.7002 1.1986 1.2547 7 6 5.7117 1.1899 -1.2590 8 6 5.8213 2.5598 -1.9718 9 6 5.5267 3.5510 -0.8172 10 1 6.4213 3.7183 -0.2173 11 6 5.0011 4.8554 -1.3587 12 1 4.8804 4.9885 -2.4236 13 6 4.6754 5.8793 -0.4947 14 7 4.2163 7.0175 -0.9672 15 14 4.8850 5.6493 1.3473 16 1 6.2490 6.0787 1.7477 17 1 3.8769 6.4691 2.0663 18 1 4.6956 4.2174 1.6921 19 8 4.5114 2.8755 -0.0405 20 6 3.5814 -0.7122 -0.0015 21 6 4.7705 -1.6379 -0.0019 22 8 2.2924 -1.0894 -0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5135 -0.8901 26 1 1.9665 2.1204 0.0004 27 1 5.9965 0.1497 1.2632 28 1 6.5904 1.8276 1.2545 29 1 5.1029 1.4147 2.1405 30 1 6.7004 0.8240 -0.9818 31 1 5.2017 0.4678 -1.8966 32 1 6.8248 2.7124 -2.3689 33 1 5.0746 2.6486 -2.7607 34 1 3.9867 7.7377 -0.3593 35 1 4.4260 -2.6719 -0.0022 36 1 5.3730 -1.4550 -0.8916 37 1 5.3726 -1.4562 0.8883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393775191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -38.494049 kcal Electronic energy + Delta-G solvation = -19174.670562 eV Core-core repulsion = 16304.572663 eV Total energy + Delta-G solvation = -2870.097898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.32426 -38.75569 -33.93152 -32.77186 -32.34506 -31.04817 -29.93741 -29.37147 -27.03984 -24.65254 -23.40041 -21.52560 -20.81029 -19.94261 -18.27992 -16.89869 -16.21977 -16.02076 -15.23842 -14.74960 -14.11956 -13.82383 -13.45799 -13.33157 -13.17969 -13.02530 -12.64742 -12.61030 -12.49531 -12.25092 -12.08295 -11.79302 -11.43843 -11.25932 -10.89199 -10.75561 -10.44944 -10.19668 -9.81346 -9.67303 -9.38293 -9.11773 -8.56341 -8.33677 -7.81491 -6.10005 -4.17898 2.00045 2.99509 3.18679 3.37801 3.45046 3.68830 4.53099 4.70099 4.88129 5.10365 5.25839 5.28277 5.36582 5.39754 5.45370 5.51898 5.56240 5.61989 5.73305 5.80499 5.85017 5.97595 6.01680 6.09657 6.21692 6.41471 6.41990 6.49734 6.55345 6.61748 6.74497 6.77421 6.97797 7.18444 7.51518 7.63245 8.27375 8.46754 8.92253 9.53869 11.00623 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.007998 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.013761 B = 3499.969638 C = 3976.399848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.040 4.040 3 C -0.171 4.171 4 C -0.145 4.145 5 C 0.161 3.839 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.134 4.134 9 C 0.171 3.829 10 H 0.026 0.974 11 C -0.516 4.516 12 H 0.079 0.921 13 C 0.084 3.916 14 N -0.892 5.892 15 Si 0.868 3.132 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.228 1.228 19 O -0.358 6.358 20 C -0.032 4.032 21 C -0.071 4.071 22 O -0.179 6.179 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -16.438 3.084 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.146 4.146 5 C 0.120 3.880 6 C -0.217 4.217 7 C -0.180 4.180 8 C -0.172 4.172 9 C 0.116 3.884 10 H 0.044 0.956 11 C -0.553 4.553 12 H 0.097 0.903 13 C -0.120 4.120 14 N -0.529 5.529 15 Si 0.694 3.306 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.150 1.150 19 O -0.278 6.278 20 C -0.081 4.081 21 C -0.127 4.127 22 O -0.078 6.078 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.170 0.830 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.261 -16.470 3.224 16.830 hybrid contribution 0.214 0.266 0.829 0.897 sum -1.047 -16.203 4.053 16.735 Atomic orbital electron populations 1.20201 0.85451 1.03155 1.03441 1.22285 0.93710 0.84172 1.08740 1.21513 0.91918 0.99760 1.05860 1.20201 0.95764 0.92381 1.06253 1.20073 0.88934 0.85195 0.93752 1.22295 1.00125 1.00792 0.98446 1.23024 0.99136 0.99125 0.96755 1.22993 1.01167 0.93306 0.99725 1.21133 0.88166 0.91934 0.87179 0.95650 1.20921 1.45673 0.93479 0.95210 0.90345 1.25045 0.92954 0.94546 0.99477 1.69920 1.42851 1.04414 1.35760 0.86992 0.77385 0.81069 0.85171 1.21043 1.21726 1.15044 1.89331 1.49925 1.14392 1.74201 1.21873 0.83198 0.93871 1.09191 1.20360 0.91701 0.97108 1.03528 1.83883 1.16122 1.35014 1.72754 0.91199 0.90071 0.89938 0.82989 0.92363 0.92172 0.92452 0.91563 0.91651 0.91790 0.91214 0.92535 0.91173 0.89858 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.00 0.38 -0.38 16 2 C -0.04 -0.64 7.32 -35.63 -0.26 -0.90 16 3 C -0.17 -3.23 10.19 -39.70 -0.40 -3.63 16 4 C -0.14 -2.68 4.68 -104.75 -0.49 -3.17 16 5 C 0.16 3.10 0.93 -91.20 -0.08 3.02 16 6 C -0.16 -2.67 8.46 37.16 0.31 -2.36 16 7 C -0.14 -2.46 5.28 -25.20 -0.13 -2.59 16 8 C -0.13 -2.73 6.55 -24.72 -0.16 -2.89 16 9 C 0.17 4.16 2.47 -26.83 -0.07 4.09 16 10 H 0.03 0.62 7.46 -51.93 -0.39 0.23 16 11 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 12 H 0.08 2.42 8.01 -52.49 -0.42 1.99 16 13 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 14 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 15 Si 0.87 22.20 27.06 -169.99 -4.60 17.60 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.23 -5.71 5.62 56.52 0.32 -5.39 16 19 O -0.36 -8.62 7.55 -35.23 -0.27 -8.89 16 20 C -0.03 -0.51 7.00 -35.63 -0.25 -0.76 16 21 C -0.07 -0.81 9.23 36.00 0.33 -0.48 16 22 O -0.18 -2.93 10.65 5.71 0.06 -2.87 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.15 3.05 8.01 -52.48 -0.42 2.63 16 27 H 0.06 0.78 5.47 -51.93 -0.28 0.50 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 31 H 0.06 1.06 6.88 -51.93 -0.36 0.70 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 34 H 0.27 7.69 8.31 -40.82 -0.34 7.36 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.88 6.94 -51.93 -0.36 0.52 16 37 H 0.08 0.86 6.12 -51.93 -0.32 0.55 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -32.78 296.37 -6.36 -39.14 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.54 Total: 0.23 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.25 Total: -22.84 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.21 Total: -11.75 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.60 Total: 17.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.78 -6.36 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.648 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds