Wall clock time and date at job start Mon Mar 30 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.58166 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.86812 * 119.25876 * 5 4 3 7 7 C 1.54097 * 109.88087 * 240.26504 * 5 4 3 8 8 C 1.54813 * 104.18813 * 121.45141 * 7 5 4 9 9 C 1.54993 * 102.09146 * 20.88440 * 8 7 5 10 10 H 1.09002 * 110.62118 * 81.62774 * 9 8 7 11 11 C 1.50702 * 110.61751 * 204.47510 * 9 8 7 12 12 H 1.07998 * 119.99965 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00017 * 180.02562 * 11 9 8 14 14 N 1.31511 * 119.99993 * 180.02562 * 13 11 9 15 15 Si 1.86808 * 119.99828 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46828 * 90.00486 * 15 13 11 17 17 H 1.48499 * 109.46913 * 210.00450 * 15 13 11 18 18 H 1.48499 * 109.47337 * 330.00533 * 15 13 11 19 19 O 1.43742 * 109.87883 * 358.25111 * 5 4 3 20 20 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 21 21 C 1.50696 * 125.79261 * 180.02562 * 20 4 3 22 22 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 25 25 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 26 26 H 1.08007 * 126.58045 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47467 * 60.70287 * 6 5 4 28 28 H 1.09000 * 109.46920 * 180.70606 * 6 5 4 29 29 H 1.08997 * 109.46701 * 300.69811 * 6 5 4 30 30 H 1.09002 * 110.49185 * 240.12929 * 7 5 4 31 31 H 1.09003 * 110.48915 * 2.77647 * 7 5 4 32 32 H 1.09005 * 110.90404 * 139.07929 * 8 7 5 33 33 H 1.08990 * 110.90853 * 262.68098 * 8 7 5 34 34 H 0.97002 * 120.00055 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47537 * 179.97438 * 21 20 4 36 36 H 1.09000 * 109.47123 * 299.99999 * 21 20 4 37 37 H 1.08997 * 109.47126 * 59.99692 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0003 6 6 5.7002 1.1986 1.2547 7 6 5.7117 1.1899 -1.2590 8 6 5.8213 2.5598 -1.9718 9 6 5.5267 3.5510 -0.8172 10 1 6.4213 3.7183 -0.2173 11 6 5.0011 4.8554 -1.3587 12 1 4.8804 4.9885 -2.4236 13 6 4.6754 5.8793 -0.4947 14 7 4.2163 7.0175 -0.9672 15 14 4.8850 5.6493 1.3473 16 1 6.2490 6.0787 1.7477 17 1 3.8769 6.4691 2.0663 18 1 4.6956 4.2174 1.6921 19 8 4.5114 2.8755 -0.0405 20 6 3.5814 -0.7122 -0.0015 21 6 4.7705 -1.6379 -0.0019 22 8 2.2924 -1.0894 -0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5135 -0.8901 26 1 1.9665 2.1204 0.0004 27 1 5.9965 0.1497 1.2632 28 1 6.5904 1.8276 1.2545 29 1 5.1029 1.4147 2.1405 30 1 6.7004 0.8240 -0.9818 31 1 5.2017 0.4678 -1.8966 32 1 6.8248 2.7124 -2.3689 33 1 5.0746 2.6486 -2.7607 34 1 3.9867 7.7377 -0.3593 35 1 4.4260 -2.6719 -0.0022 36 1 5.3730 -1.4550 -0.8916 37 1 5.3726 -1.4562 0.8883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393775191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:16 Heat of formation + Delta-G solvation = -59.196044 kcal Electronic energy + Delta-G solvation = -19175.568268 eV Core-core repulsion = 16304.572663 eV Total energy + Delta-G solvation = -2870.995604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.58720 -40.37128 -35.51797 -34.38873 -33.92586 -32.65556 -31.40609 -30.36184 -28.83725 -25.93246 -24.96697 -22.92475 -22.28583 -21.62849 -19.64429 -19.03297 -17.55213 -17.27261 -16.96838 -16.46952 -15.65734 -15.30786 -14.83069 -14.66673 -14.57712 -14.29475 -14.19556 -13.76670 -13.72097 -13.57673 -13.42967 -13.17829 -12.87043 -12.60954 -12.48511 -12.45985 -11.99632 -11.93767 -11.63965 -11.43960 -11.29129 -10.79110 -10.52745 -10.10469 -9.02848 -8.38010 -6.50116 0.78017 1.31881 1.36088 1.63793 1.64851 2.03719 2.38492 2.86283 3.43016 3.70550 3.87543 4.00403 4.06362 4.15210 4.29487 4.41776 4.44623 4.47982 4.56049 4.62635 4.68980 4.76266 4.85683 4.91754 4.93491 4.95776 4.99118 5.14758 5.22098 5.23806 5.36116 5.43724 5.47497 5.54513 5.63949 6.19356 6.24304 6.48198 6.71650 7.25766 8.76540 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.007998 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.013761 B = 3499.969638 C = 3976.399848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.028 4.028 3 C -0.218 4.218 4 C -0.179 4.179 5 C 0.150 3.850 6 C -0.156 4.156 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.170 3.830 10 H 0.033 0.967 11 C -0.527 4.527 12 H 0.039 0.961 13 C 0.028 3.972 14 N -0.939 5.939 15 Si 0.935 3.065 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.222 1.222 19 O -0.389 6.389 20 C -0.018 4.018 21 C -0.073 4.073 22 O -0.180 6.180 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -19.855 4.385 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.237 4.237 4 C -0.181 4.181 5 C 0.110 3.890 6 C -0.213 4.213 7 C -0.166 4.166 8 C -0.171 4.171 9 C 0.114 3.886 10 H 0.050 0.950 11 C -0.564 4.564 12 H 0.057 0.943 13 C -0.171 4.171 14 N -0.579 5.579 15 Si 0.758 3.242 16 H -0.194 1.194 17 H -0.220 1.220 18 H -0.144 1.144 19 O -0.310 6.310 20 C -0.068 4.068 21 C -0.129 4.129 22 O -0.078 6.078 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.200 -19.907 4.517 20.414 hybrid contribution -0.185 1.283 0.336 1.339 sum -0.385 -18.624 4.853 19.250 Atomic orbital electron populations 1.20399 0.82450 1.05004 1.04413 1.22870 0.95332 0.83244 1.06274 1.21489 0.93524 0.99373 1.09347 1.20287 0.95215 0.93702 1.08850 1.20415 0.90120 0.82641 0.95823 1.22296 0.99308 1.03346 0.96392 1.23002 1.00945 0.97195 0.95460 1.22925 1.01578 0.94499 0.98109 1.20964 0.87861 0.90933 0.88814 0.94980 1.21227 1.45247 0.96276 0.93649 0.94321 1.25921 0.92770 0.94177 1.04279 1.70051 1.44890 1.05520 1.37432 0.85955 0.77812 0.81067 0.79370 1.19412 1.21965 1.14418 1.89222 1.50102 1.17531 1.74096 1.22560 0.84014 0.93598 1.06590 1.20618 0.90026 0.97335 1.04929 1.83926 1.16556 1.34883 1.72429 0.88845 0.88871 0.89131 0.85890 0.88440 0.92085 0.93873 0.87784 0.90467 0.89675 0.93520 0.92349 0.88967 0.88372 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.23 0.74 -0.66 16 2 C -0.03 -0.86 7.32 24.83 0.18 -0.68 16 3 C -0.22 -8.33 10.19 22.19 0.23 -8.10 16 4 C -0.18 -6.40 4.68 -19.94 -0.09 -6.50 16 5 C 0.15 5.50 0.93 -11.17 -0.01 5.49 16 6 C -0.16 -4.75 8.46 71.98 0.61 -4.14 16 7 C -0.13 -4.04 5.28 31.58 0.17 -3.88 16 8 C -0.13 -5.32 6.55 31.89 0.21 -5.11 16 9 C 0.17 8.29 2.47 30.53 0.08 8.36 16 10 H 0.03 1.53 7.46 -2.39 -0.02 1.51 16 11 C -0.53 -31.60 9.39 25.60 0.24 -31.36 16 12 H 0.04 2.54 8.01 -2.91 -0.02 2.51 16 13 C 0.03 1.71 5.47 84.66 0.46 2.17 16 14 N -0.94 -60.56 13.96 21.45 0.30 -60.26 16 15 Si 0.93 47.01 27.06 68.60 1.86 48.87 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 18 H -0.22 -10.86 5.62 99.48 0.56 -10.30 16 19 O -0.39 -18.77 7.55 -148.98 -1.13 -19.90 16 20 C -0.02 -0.52 7.00 24.83 0.17 -0.35 16 21 C -0.07 -1.32 9.23 71.23 0.66 -0.66 16 22 O -0.18 -5.42 10.65 -2.47 -0.03 -5.45 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.12 5.30 8.01 -2.91 -0.02 5.27 16 27 H 0.10 2.13 5.47 -2.39 -0.01 2.12 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 2.50 7.70 -2.39 -0.02 2.48 16 31 H 0.08 2.25 6.88 -2.39 -0.02 2.23 16 32 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 33 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 34 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.53 6.94 -2.39 -0.02 1.52 16 37 H 0.10 1.50 6.12 -2.39 -0.01 1.49 16 Total: -1.00 -75.06 296.37 5.55 -69.51 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.90 Total: 12.62 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 3.64 Total: -45.41 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.30 Total: -60.26 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.15 Total: -25.34 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.86 Total: 48.87 kcal Total: -75.06 5.55 -69.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.318 kcal (2) G-P(sol) polarization free energy of solvation -75.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds