Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.79203 * 2 1 4 4 C 1.41377 * 106.84248 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.57959 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.87051 * 245.04348 * 5 4 3 7 7 C 1.54103 * 110.00302 * 123.96397 * 5 4 3 8 8 C 1.54814 * 104.18689 * 238.47830 * 7 5 4 9 9 C 1.55003 * 102.08755 * 339.11327 * 8 7 5 10 10 H 1.08994 * 110.62147 * 278.52186 * 9 8 7 11 11 C 1.50700 * 110.61311 * 155.52650 * 9 8 7 12 12 H 1.07998 * 120.00517 * 0.02562 * 11 9 8 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00551 * 180.02562 * 13 11 9 15 15 Si 1.86802 * 119.99776 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47188 * 90.00220 * 15 13 11 17 17 H 1.48502 * 109.46966 * 210.00277 * 15 13 11 18 18 H 1.48501 * 109.47119 * 329.99940 * 15 13 11 19 19 O 1.43740 * 109.87928 * 6.05612 * 5 4 3 20 20 C 1.34520 * 106.84235 * 0.22519 * 4 3 2 21 21 C 1.50700 * 125.79239 * 179.77290 * 20 4 3 22 22 O 1.34303 * 125.78742 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46867 * 90.00470 * 1 2 3 24 24 H 1.08992 * 109.47362 * 210.00359 * 1 2 3 25 25 H 1.09004 * 109.47136 * 330.00991 * 1 2 3 26 26 H 1.08004 * 126.57622 * 359.93590 * 3 2 1 27 27 H 1.09001 * 109.47404 * 174.91215 * 6 5 4 28 28 H 1.09001 * 109.47604 * 294.91618 * 6 5 4 29 29 H 1.09001 * 109.47154 * 54.91346 * 6 5 4 30 30 H 1.08995 * 110.49094 * 119.79833 * 7 5 4 31 31 H 1.09005 * 110.48580 * 357.14541 * 7 5 4 32 32 H 1.08998 * 110.90654 * 220.92165 * 8 7 5 33 33 H 1.08993 * 110.90886 * 97.31486 * 8 7 5 34 34 H 0.96998 * 120.00136 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.46613 * 95.36933 * 21 20 4 36 36 H 1.08994 * 109.46896 * 215.36673 * 21 20 4 37 37 H 1.09002 * 109.46842 * 335.37237 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8733 1.4850 0.0003 6 6 5.6459 1.2779 -1.3039 7 6 5.7655 1.1172 1.2017 8 6 5.9074 2.4428 1.9887 9 6 5.5641 3.5000 0.9085 10 1 6.4311 3.7017 0.2796 11 6 5.0641 4.7694 1.5484 12 1 4.9899 4.8393 2.6236 13 6 4.7013 5.8417 0.7613 14 7 4.2654 6.9498 1.3198 15 14 4.8289 5.7207 -1.0984 16 1 3.5513 5.2021 -1.6495 17 1 5.1023 7.0661 -1.6644 18 1 5.9347 4.7977 -1.4596 19 8 4.5154 2.8699 0.1419 20 6 3.5814 -0.7123 -0.0041 21 6 4.7706 -1.6380 -0.0102 22 8 2.2924 -1.0895 0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8901 0.5137 26 1 1.9666 2.1204 -0.0010 27 1 6.4931 1.9629 -1.3371 28 1 6.0071 0.2506 -1.3532 29 1 4.9879 1.4726 -2.1509 30 1 6.7406 0.7697 0.8606 31 1 5.2826 0.3581 1.8172 32 1 6.9274 2.5732 2.3502 33 1 5.1958 2.4838 2.8133 34 1 4.0105 7.7042 0.7660 35 1 5.0005 -1.9407 1.0114 36 1 4.5411 -2.5202 -0.6077 37 1 5.6301 -1.1224 -0.4386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393775192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -39.290191 kcal Electronic energy + Delta-G solvation = -19170.558320 eV Core-core repulsion = 16300.425898 eV Total energy + Delta-G solvation = -2870.132422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33558 -38.80115 -33.96296 -32.78542 -32.36527 -31.06234 -29.97146 -29.35987 -27.06715 -24.66033 -23.41190 -21.52944 -20.84617 -19.95112 -18.29320 -16.94354 -16.23451 -16.04613 -15.24273 -14.73762 -14.22638 -13.84152 -13.43512 -13.35223 -13.18623 -13.03291 -12.61576 -12.59421 -12.46891 -12.30816 -12.12111 -11.86553 -11.47786 -11.22002 -10.86518 -10.71238 -10.43427 -10.33329 -9.84797 -9.65230 -9.43004 -9.14035 -8.62556 -8.41978 -7.83315 -6.11157 -4.19467 1.98985 2.98329 3.17124 3.40802 3.45758 3.55101 4.47275 4.65907 4.87230 5.07623 5.23056 5.27531 5.36546 5.43369 5.43558 5.49956 5.53749 5.62129 5.70004 5.78430 5.84355 5.94684 6.02143 6.09660 6.21197 6.40485 6.41228 6.49593 6.54022 6.59361 6.73414 6.76244 6.96136 7.18576 7.50262 7.61923 8.25125 8.45379 8.90534 9.51751 10.99383 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.008016 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.437453 B = 3492.307608 C = 3981.893227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.039 4.039 3 C -0.171 4.171 4 C -0.145 4.145 5 C 0.163 3.837 6 C -0.160 4.160 7 C -0.143 4.143 8 C -0.135 4.135 9 C 0.167 3.833 10 H 0.031 0.969 11 C -0.513 4.513 12 H 0.080 0.920 13 C 0.083 3.917 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.297 1.297 18 H -0.266 1.266 19 O -0.365 6.365 20 C -0.030 4.030 21 C -0.072 4.072 22 O -0.179 6.179 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.152 0.848 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -16.049 -3.927 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C -0.190 4.190 4 C -0.147 4.147 5 C 0.122 3.878 6 C -0.218 4.218 7 C -0.180 4.180 8 C -0.172 4.172 9 C 0.112 3.888 10 H 0.049 0.951 11 C -0.550 4.550 12 H 0.098 0.902 13 C -0.121 4.121 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.225 1.225 18 H -0.191 1.191 19 O -0.285 6.285 20 C -0.079 4.079 21 C -0.129 4.129 22 O -0.078 6.078 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.170 0.830 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.315 -16.063 -4.034 16.614 hybrid contribution 0.130 0.190 -0.864 0.895 sum -1.185 -15.873 -4.899 16.654 Atomic orbital electron populations 1.20205 0.85423 1.03642 1.02976 1.22292 0.93721 0.84144 1.08680 1.21525 0.91932 0.99730 1.05861 1.20190 0.95716 0.92374 1.06392 1.20078 0.89027 0.84870 0.93798 1.22336 1.00465 1.00954 0.98007 1.23044 0.98851 0.99246 0.96906 1.23004 1.01085 0.93595 0.99555 1.21265 0.87619 0.92062 0.87821 0.95119 1.20927 1.45570 0.93523 0.94940 0.90203 1.25059 0.93003 0.94753 0.99316 1.69922 1.42898 1.03936 1.36201 0.86478 0.79753 0.75983 0.85217 1.19912 1.22467 1.19106 1.89123 1.47605 1.16600 1.75193 1.21887 0.83216 0.93834 1.09004 1.20394 0.91941 0.97459 1.03069 1.83870 1.16102 1.34995 1.72806 0.90657 0.91110 0.89442 0.83027 0.91952 0.92289 0.92439 0.91533 0.91536 0.91752 0.91210 0.92473 0.90562 0.91110 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.01 0.38 -0.38 16 2 C -0.04 -0.63 7.32 -35.62 -0.26 -0.89 16 3 C -0.17 -3.24 10.20 -39.70 -0.40 -3.65 16 4 C -0.15 -2.70 4.71 -104.74 -0.49 -3.20 16 5 C 0.16 3.16 0.87 -91.20 -0.08 3.08 16 6 C -0.16 -2.71 8.44 37.16 0.31 -2.40 16 7 C -0.14 -2.46 5.26 -25.20 -0.13 -2.59 16 8 C -0.13 -2.75 6.55 -24.72 -0.16 -2.91 16 9 C 0.17 4.11 2.43 -26.82 -0.07 4.04 16 10 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 11 C -0.51 -14.81 9.39 -34.44 -0.32 -15.13 16 12 H 0.08 2.46 8.01 -52.49 -0.42 2.03 16 13 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 14 N -0.89 -27.55 13.96 55.43 0.77 -26.77 16 15 Si 0.90 23.23 26.57 -169.99 -4.52 18.71 16 16 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.27 -6.63 6.46 56.52 0.37 -6.27 16 19 O -0.36 -8.86 8.36 -35.23 -0.29 -9.16 16 20 C -0.03 -0.48 6.97 -35.62 -0.25 -0.73 16 21 C -0.07 -0.84 9.27 36.01 0.33 -0.50 16 22 O -0.18 -2.94 10.65 5.70 0.06 -2.88 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.15 3.06 8.02 -52.48 -0.42 2.64 16 27 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 28 H 0.06 0.79 5.64 -51.93 -0.29 0.50 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 31 H 0.07 1.07 7.11 -51.93 -0.37 0.71 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 34 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.98 4.96 -51.93 -0.26 0.72 16 LS Contribution 297.27 15.07 4.48 4.48 Total: -1.00 -32.75 297.27 -6.23 -38.97 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.49 Total: -0.45 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.25 Total: -22.91 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.77 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.23 Total: -12.03 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.52 Total: 18.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.75 -6.23 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.317 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds