Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.79203 * 2 1 4 4 C 1.41377 * 106.84248 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.57959 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.87051 * 245.04348 * 5 4 3 7 7 C 1.54103 * 110.00302 * 123.96397 * 5 4 3 8 8 C 1.54814 * 104.18689 * 238.47830 * 7 5 4 9 9 C 1.55003 * 102.08755 * 339.11327 * 8 7 5 10 10 H 1.08994 * 110.62147 * 278.52186 * 9 8 7 11 11 C 1.50700 * 110.61311 * 155.52650 * 9 8 7 12 12 H 1.07998 * 120.00517 * 0.02562 * 11 9 8 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00551 * 180.02562 * 13 11 9 15 15 Si 1.86802 * 119.99776 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47188 * 90.00220 * 15 13 11 17 17 H 1.48502 * 109.46966 * 210.00277 * 15 13 11 18 18 H 1.48501 * 109.47119 * 329.99940 * 15 13 11 19 19 O 1.43740 * 109.87928 * 6.05612 * 5 4 3 20 20 C 1.34520 * 106.84235 * 0.22519 * 4 3 2 21 21 C 1.50700 * 125.79239 * 179.77290 * 20 4 3 22 22 O 1.34303 * 125.78742 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46867 * 90.00470 * 1 2 3 24 24 H 1.08992 * 109.47362 * 210.00359 * 1 2 3 25 25 H 1.09004 * 109.47136 * 330.00991 * 1 2 3 26 26 H 1.08004 * 126.57622 * 359.93590 * 3 2 1 27 27 H 1.09001 * 109.47404 * 174.91215 * 6 5 4 28 28 H 1.09001 * 109.47604 * 294.91618 * 6 5 4 29 29 H 1.09001 * 109.47154 * 54.91346 * 6 5 4 30 30 H 1.08995 * 110.49094 * 119.79833 * 7 5 4 31 31 H 1.09005 * 110.48580 * 357.14541 * 7 5 4 32 32 H 1.08998 * 110.90654 * 220.92165 * 8 7 5 33 33 H 1.08993 * 110.90886 * 97.31486 * 8 7 5 34 34 H 0.96998 * 120.00136 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.46613 * 95.36933 * 21 20 4 36 36 H 1.08994 * 109.46896 * 215.36673 * 21 20 4 37 37 H 1.09002 * 109.46842 * 335.37237 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8733 1.4850 0.0003 6 6 5.6459 1.2779 -1.3039 7 6 5.7655 1.1172 1.2017 8 6 5.9074 2.4428 1.9887 9 6 5.5641 3.5000 0.9085 10 1 6.4311 3.7017 0.2796 11 6 5.0641 4.7694 1.5484 12 1 4.9899 4.8393 2.6236 13 6 4.7013 5.8417 0.7613 14 7 4.2654 6.9498 1.3198 15 14 4.8289 5.7207 -1.0984 16 1 3.5513 5.2021 -1.6495 17 1 5.1023 7.0661 -1.6644 18 1 5.9347 4.7977 -1.4596 19 8 4.5154 2.8699 0.1419 20 6 3.5814 -0.7123 -0.0041 21 6 4.7706 -1.6380 -0.0102 22 8 2.2924 -1.0895 0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8901 0.5137 26 1 1.9666 2.1204 -0.0010 27 1 6.4931 1.9629 -1.3371 28 1 6.0071 0.2506 -1.3532 29 1 4.9879 1.4726 -2.1509 30 1 6.7406 0.7697 0.8606 31 1 5.2826 0.3581 1.8172 32 1 6.9274 2.5732 2.3502 33 1 5.1958 2.4838 2.8133 34 1 4.0105 7.7042 0.7660 35 1 5.0005 -1.9407 1.0114 36 1 4.5411 -2.5202 -0.6077 37 1 5.6301 -1.1224 -0.4386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393775192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -60.148887 kcal Electronic energy + Delta-G solvation = -19171.462821 eV Core-core repulsion = 16300.425898 eV Total energy + Delta-G solvation = -2871.036923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.60520 -40.42660 -35.55627 -34.41948 -33.94735 -32.67370 -31.44351 -30.35751 -28.87605 -25.94840 -24.98247 -22.93863 -22.33149 -21.64016 -19.66620 -19.08084 -17.57589 -17.30026 -16.97962 -16.49326 -15.73398 -15.33510 -14.90633 -14.64519 -14.58166 -14.32454 -14.14312 -13.82941 -13.73234 -13.57307 -13.46435 -13.25670 -12.91230 -12.65722 -12.49848 -12.40219 -12.07667 -11.89590 -11.70068 -11.42742 -11.32552 -10.89869 -10.56320 -10.20299 -9.04891 -8.39822 -6.51935 0.76567 1.29675 1.37418 1.46216 1.63089 2.01293 2.31800 2.80242 3.40389 3.68116 3.85434 3.99013 4.03524 4.12329 4.27773 4.36368 4.42012 4.47281 4.57822 4.64234 4.67791 4.75148 4.79358 4.90953 4.92627 4.94045 4.97432 5.15704 5.18642 5.21775 5.33458 5.42514 5.46245 5.52687 5.61640 6.17726 6.22464 6.45775 6.68723 7.23132 8.74787 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.008016 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.437453 B = 3492.307608 C = 3981.893227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.027 4.027 3 C -0.219 4.219 4 C -0.180 4.180 5 C 0.152 3.848 6 C -0.157 4.157 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.166 3.834 10 H 0.035 0.965 11 C -0.524 4.524 12 H 0.042 0.958 13 C 0.030 3.970 14 N -0.937 5.937 15 Si 0.958 3.042 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.248 1.248 19 O -0.396 6.396 20 C -0.016 4.016 21 C -0.074 4.074 22 O -0.180 6.180 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -19.421 -5.273 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.238 4.238 4 C -0.182 4.182 5 C 0.112 3.888 6 C -0.215 4.215 7 C -0.166 4.166 8 C -0.171 4.171 9 C 0.111 3.889 10 H 0.052 0.948 11 C -0.561 4.561 12 H 0.061 0.939 13 C -0.170 4.170 14 N -0.577 5.577 15 Si 0.784 3.216 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.172 1.172 19 O -0.317 6.317 20 C -0.065 4.065 21 C -0.130 4.130 22 O -0.077 6.077 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.296 -19.452 -5.376 20.183 hybrid contribution -0.260 1.180 -0.368 1.263 sum -0.556 -18.272 -5.744 19.161 Atomic orbital electron populations 1.20405 0.82406 1.04892 1.04565 1.22876 0.95345 0.83204 1.06179 1.21497 0.93563 0.99328 1.09422 1.20273 0.95144 0.93704 1.09031 1.20430 0.90235 0.82307 0.95858 1.22337 0.99651 1.03430 0.96034 1.23030 1.00499 0.97491 0.95593 1.22933 1.01630 0.94395 0.98151 1.21085 0.87293 0.91460 0.89100 0.94789 1.21232 1.45146 0.96127 0.93613 0.93948 1.25873 0.92852 0.94429 1.03845 1.70038 1.44784 1.04910 1.37935 0.85525 0.79699 0.76605 0.79806 1.20951 1.21345 1.17180 1.89019 1.47739 1.19805 1.75152 1.22575 0.84038 0.93539 1.06376 1.20644 0.90013 0.97456 1.04893 1.83914 1.16519 1.34828 1.72485 0.88781 0.88867 0.89153 0.85996 0.92292 0.88225 0.93689 0.87733 0.90213 0.89580 0.93412 0.92192 0.88636 0.88766 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.42 71.24 0.74 -0.66 16 2 C -0.03 -0.83 7.32 24.83 0.18 -0.64 16 3 C -0.22 -8.42 10.20 22.19 0.23 -8.20 16 4 C -0.18 -6.48 4.71 -19.94 -0.09 -6.58 16 5 C 0.15 5.61 0.87 -11.17 -0.01 5.60 16 6 C -0.16 -4.86 8.44 71.98 0.61 -4.25 16 7 C -0.13 -4.05 5.26 31.59 0.17 -3.88 16 8 C -0.13 -5.33 6.55 31.90 0.21 -5.12 16 9 C 0.17 8.18 2.43 30.53 0.07 8.25 16 10 H 0.03 1.66 6.95 -2.39 -0.02 1.64 16 11 C -0.52 -31.49 9.39 25.60 0.24 -31.25 16 12 H 0.04 2.77 8.01 -2.91 -0.02 2.75 16 13 C 0.03 1.82 5.47 84.65 0.46 2.29 16 14 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 15 Si 0.96 48.98 26.57 68.60 1.82 50.80 16 16 H -0.28 -14.81 7.11 99.48 0.71 -14.11 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.25 -11.81 6.46 99.48 0.64 -11.16 16 19 O -0.40 -19.38 8.36 -148.98 -1.25 -20.63 16 20 C -0.02 -0.45 6.97 24.83 0.17 -0.28 16 21 C -0.07 -1.34 9.27 71.24 0.66 -0.68 16 22 O -0.18 -5.42 10.65 -2.53 -0.03 -5.44 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.12 5.30 8.02 -2.91 -0.02 5.28 16 27 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 28 H 0.10 2.20 5.64 -2.39 -0.01 2.19 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.51 7.70 -2.39 -0.02 2.49 16 31 H 0.08 2.31 7.11 -2.38 -0.02 2.29 16 32 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 34 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.61 4.96 -2.39 -0.01 1.60 16 Total: -1.00 -74.96 297.27 5.48 -69.48 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.99 Total: 11.07 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 3.64 Total: -45.41 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.27 Total: -26.07 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.82 Total: 50.80 kcal Total: -74.96 5.48 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393775192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds