Wall clock time and date at job start Mon Mar 30 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99843 * 2 1 4 4 C 1.38564 * 120.07465 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.00349 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.14444 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.14260 * 359.97438 * 6 5 4 8 8 C 1.38570 * 120.00441 * 359.72658 * 7 6 5 9 9 O 1.35987 * 120.07523 * 180.27332 * 8 7 6 10 10 C 1.42902 * 117.00290 * 0.27721 * 9 8 7 11 11 C 1.53000 * 109.47414 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47272 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47220 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47145 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00104 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99380 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00309 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47137 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46909 * 120.00271 * 18 16 14 21 21 H 1.48500 * 109.47256 * 240.00537 * 18 16 14 22 22 H 1.09001 * 109.47103 * 60.00803 * 1 2 3 23 23 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00363 * 1 2 3 25 25 H 1.08004 * 119.99967 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.92979 * 179.97438 * 5 4 3 27 27 H 1.07994 * 119.92810 * 179.97438 * 6 5 4 28 28 H 1.08005 * 119.99604 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46990 * 300.00122 * 10 9 8 30 30 H 1.09000 * 109.46884 * 60.00081 * 10 9 8 31 31 H 1.09001 * 109.47031 * 300.00578 * 11 10 9 32 32 H 1.09000 * 109.46847 * 60.00281 * 11 10 9 33 33 H 1.09011 * 109.47335 * 300.00203 * 12 11 10 34 34 H 1.08995 * 109.47159 * 59.99810 * 12 11 10 35 35 H 1.08998 * 109.46475 * 299.99426 * 13 12 11 36 36 H 1.09000 * 109.47318 * 59.99919 * 13 12 11 37 37 H 0.97006 * 119.99338 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3029 3.6799 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 3.4359 1.2863 0.0057 9 8 4.1795 0.1478 0.0119 10 6 5.6003 0.3007 0.0171 11 6 6.2618 -1.0788 0.0242 12 6 7.7830 -0.9150 0.0304 13 6 8.4445 -2.2946 0.0369 14 6 9.9428 -2.1332 0.0437 15 1 10.3796 -1.1455 0.0430 16 6 10.7561 -3.2466 0.0508 17 7 10.2242 -4.4494 0.0512 18 14 12.6133 -3.0466 0.0585 19 1 12.9556 -1.6016 0.0561 20 1 13.1750 -3.6858 1.2754 21 1 13.1859 -3.6932 -1.1495 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2146 2.3196 -0.0014 26 1 1.3341 4.5115 -0.0019 27 1 3.7907 4.6434 -0.0024 28 1 5.1386 2.5841 -0.0011 29 1 5.9100 0.8480 -0.8732 30 1 5.9030 0.8530 0.9067 31 1 5.9520 -1.6258 0.9147 32 1 5.9592 -1.6315 -0.8652 33 1 8.0932 -0.3679 -0.8599 34 1 8.0852 -0.3625 0.9200 35 1 8.1344 -2.8419 0.9271 36 1 8.1422 -2.8468 -0.8529 37 1 10.7964 -5.2327 0.0558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395369459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:17 Heat of formation + Delta-G solvation = -89.863881 kcal Electronic energy + Delta-G solvation = -17291.061565 eV Core-core repulsion = 14418.736103 eV Total energy + Delta-G solvation = -2872.325461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46554 -39.56318 -37.86130 -36.48131 -34.42269 -31.44743 -31.26222 -30.11442 -28.04874 -26.88067 -24.23437 -23.25659 -22.44460 -21.76405 -19.54629 -18.44227 -18.16686 -17.38089 -17.36156 -16.54668 -16.51133 -15.71933 -15.63464 -15.46504 -15.21912 -14.48435 -14.07960 -13.85727 -13.64789 -13.10124 -13.07931 -12.98842 -12.70302 -12.46398 -12.35301 -12.07126 -11.99742 -11.87333 -11.80926 -11.40056 -11.35486 -11.12177 -10.56472 -9.71379 -8.79996 -8.20188 -6.31835 0.32028 0.47554 1.40515 1.41059 1.54602 2.21523 2.40406 2.42189 2.77856 3.13008 3.82336 3.95890 3.96136 4.06142 4.14814 4.29253 4.33933 4.40612 4.46744 4.49742 4.52823 4.60233 4.73038 4.77713 4.80512 5.08787 5.22435 5.23827 5.25424 5.36324 5.52320 5.54893 5.73487 5.79223 5.85101 6.15934 6.23641 6.66284 6.85874 7.37695 8.92228 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042097 B = 0.003268 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.966563 B = 8564.902466 C = 9193.509722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.070 3.930 4 C -0.173 4.173 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.182 4.182 8 C 0.068 3.932 9 O -0.332 6.332 10 C 0.068 3.932 11 C -0.109 4.109 12 C -0.092 4.092 13 C 0.021 3.979 14 C -0.543 4.543 15 H 0.064 0.936 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.060 0.940 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 17.650 -0.120 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.025 3.975 4 C -0.191 4.191 5 C -0.137 4.137 6 C -0.137 4.137 7 C -0.201 4.201 8 C 0.023 3.977 9 O -0.247 6.247 10 C -0.006 4.006 11 C -0.147 4.147 12 C -0.130 4.130 13 C -0.016 4.016 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.087 0.913 23 H 0.128 0.872 24 H 0.086 0.914 25 H 0.177 0.823 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.651 17.079 -0.119 26.036 hybrid contribution 0.901 -0.480 0.006 1.021 sum -18.750 16.600 -0.113 25.043 Atomic orbital electron populations 1.23331 0.76564 1.05283 1.02378 1.86165 1.23349 1.26686 1.89275 1.18685 0.89356 0.86206 1.03257 1.21402 1.01061 0.90945 1.05721 1.21285 0.94703 0.97750 0.99930 1.21264 0.94241 0.98253 0.99918 1.21401 1.01479 0.91052 1.06178 1.18803 0.89062 0.86786 1.03045 1.86127 1.19775 1.29677 1.89120 1.22874 0.76952 0.98612 1.02198 1.21476 0.95280 0.95621 1.02301 1.21343 0.91994 0.98206 1.01435 1.19031 0.94735 0.93042 0.94824 1.21755 0.92905 0.93048 1.50350 0.91769 1.26056 1.04519 0.94906 0.94743 1.70128 1.37184 0.98498 1.51806 0.85343 0.78807 0.78816 0.77738 1.18287 1.20409 1.20402 0.91342 0.87163 0.91357 0.82348 0.82368 0.82896 0.83888 0.90896 0.90909 0.92346 0.92342 0.92097 0.92091 0.99139 0.99130 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.38 10.28 -79.59 -0.82 -10.20 16 3 C 0.07 1.87 6.70 22.57 0.15 2.02 16 4 C -0.17 -3.23 9.04 22.35 0.20 -3.02 16 5 C -0.12 -1.87 10.04 22.28 0.22 -1.65 16 6 C -0.12 -2.10 10.04 22.28 0.22 -1.88 16 7 C -0.18 -4.27 9.04 22.35 0.20 -4.06 16 8 C 0.07 2.01 6.70 22.57 0.15 2.16 16 9 O -0.33 -11.39 9.92 -79.53 -0.79 -12.18 16 10 C 0.07 2.08 4.74 71.98 0.34 2.43 16 11 C -0.11 -4.01 5.58 30.59 0.17 -3.84 16 12 C -0.09 -3.82 5.15 30.59 0.16 -3.67 16 13 C 0.02 1.13 4.97 29.85 0.15 1.28 16 14 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 15 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 17 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 23 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 25 H 0.16 1.95 6.30 -2.91 -0.02 1.93 16 26 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 27 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.14 2.99 6.30 -2.91 -0.02 2.97 16 29 H 0.07 1.99 7.65 -2.39 -0.02 1.97 16 30 H 0.07 1.99 7.68 -2.39 -0.02 1.97 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -72.29 313.15 5.52 -66.77 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.03 Total: 6.72 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.78 Total: -39.87 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.28 Total: -58.06 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.61 Total: -22.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.29 5.52 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.096 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds