Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38203 * 120.10822 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97353 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47459 * 265.00169 * 8 7 6 10 10 H 1.07994 * 119.99526 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00110 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99704 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99958 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47000 * 89.99566 * 13 11 9 15 15 H 1.48495 * 109.46632 * 209.99516 * 13 11 9 16 16 H 1.48499 * 109.47007 * 329.99761 * 13 11 9 17 17 C 1.38753 * 120.05526 * 0.02562 * 7 6 5 18 18 O 1.35892 * 120.02924 * 180.02562 * 17 7 6 19 19 C 1.42899 * 117.00358 * 179.97438 * 18 17 7 20 20 C 1.52999 * 109.47416 * 180.02562 * 19 18 17 21 21 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 27 27 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 28 28 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.47206 * 25.00118 * 8 7 6 30 30 H 1.08999 * 109.47591 * 145.00348 * 8 7 6 31 31 H 0.96995 * 119.99555 * 179.97438 * 12 11 9 32 32 H 1.08999 * 109.47332 * 300.00881 * 19 18 17 33 33 H 1.09001 * 109.46607 * 60.00283 * 19 18 17 34 34 H 1.08996 * 109.46811 * 60.00595 * 20 19 18 35 35 H 1.09002 * 109.46875 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47368 * 300.00588 * 20 19 18 37 37 H 1.08005 * 120.04688 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0039 9 6 8.0792 2.2613 1.4109 10 1 7.3750 2.2419 2.2295 11 6 9.4212 2.4563 1.6603 12 7 9.8435 2.6201 2.8950 13 14 10.6391 2.4893 0.2444 14 1 10.7833 3.8814 -0.2522 15 1 11.9573 1.9921 0.7138 16 1 10.1449 1.6207 -0.8540 17 6 5.2591 2.9843 -0.0011 18 8 5.7821 4.2386 -0.0022 19 6 4.8567 5.3274 -0.0016 20 6 5.6255 6.6502 -0.0036 21 6 3.8841 2.8059 -0.0064 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7868 -0.5730 0.0003 28 1 6.2259 -0.2522 -0.0020 29 1 8.0743 1.1971 -0.4389 30 1 7.8469 2.9557 -0.5936 31 1 10.7876 2.7569 3.0704 32 1 4.2287 5.2711 -0.8907 33 1 4.2309 5.2718 0.8892 34 1 6.2508 6.7055 -0.8946 35 1 4.9195 7.4807 -0.0027 36 1 6.2537 6.7068 0.8853 37 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396107800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = -64.290562 kcal Electronic energy + Delta-G solvation = -18159.833904 eV Core-core repulsion = 15288.617385 eV Total energy + Delta-G solvation = -2871.216519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06156 -38.66880 -36.39834 -33.20578 -31.96238 -31.43048 -30.54198 -29.32583 -26.83447 -23.90044 -23.52903 -22.49497 -20.92631 -20.18350 -18.40564 -16.68990 -16.17510 -16.01511 -15.86109 -15.58169 -14.99468 -14.08793 -13.83871 -13.33138 -13.21904 -12.98065 -12.67099 -12.60799 -12.35313 -12.30085 -11.95428 -11.68608 -11.44146 -11.33554 -11.01855 -10.75388 -10.60481 -10.31540 -10.17304 -9.89167 -9.75836 -9.23374 -8.46542 -8.06773 -7.20771 -5.96171 -3.92647 1.90323 2.04440 3.33494 3.36792 3.43215 3.46887 3.76256 4.33181 4.51754 4.86918 4.93416 5.17241 5.20421 5.24582 5.29415 5.36071 5.43397 5.47241 5.50626 5.67271 5.69106 5.78226 5.86722 6.00543 6.05572 6.07004 6.24889 6.34141 6.72612 6.76705 6.98414 7.05521 7.27637 7.53658 7.70511 7.82093 8.05330 8.62650 9.09496 9.65228 11.17385 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.006221 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.778794 B = 4500.030788 C = 5419.521509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.139 3.861 5 C -0.244 4.244 6 C -0.051 4.051 7 C -0.095 4.095 8 C 0.027 3.973 9 C -0.500 4.500 10 H 0.071 0.929 11 C 0.068 3.932 12 N -0.905 5.905 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 C 0.167 3.833 18 O -0.290 6.290 19 C 0.053 3.947 20 C -0.151 4.151 21 C -0.245 4.245 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 -0.828 -7.742 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.094 3.906 5 C -0.263 4.263 6 C -0.069 4.069 7 C -0.095 4.095 8 C -0.010 4.010 9 C -0.538 4.538 10 H 0.089 0.911 11 C -0.133 4.133 12 N -0.544 5.544 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C 0.121 3.879 18 O -0.202 6.202 19 C -0.023 4.023 20 C -0.208 4.208 21 C -0.264 4.264 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.050 -0.580 -7.635 16.886 hybrid contribution 0.508 -0.150 -0.492 0.723 sum -14.542 -0.730 -8.127 16.675 Atomic orbital electron populations 1.21765 0.93229 1.02522 1.03272 1.22686 0.95294 0.82568 1.01399 1.85980 1.19698 1.28729 1.89266 1.18445 0.81530 0.93491 0.97132 1.20995 0.94352 0.97237 1.13726 1.20661 0.93624 0.96444 0.96210 1.19612 0.97761 0.89866 1.02305 1.18583 0.86803 0.97060 0.98576 1.20931 0.93272 1.48655 0.90947 0.91110 1.24962 0.98175 0.94794 0.95360 1.69907 1.15237 1.50324 1.18971 0.86822 0.80648 0.78840 0.83286 1.20227 1.21470 1.19005 1.18502 0.90000 0.84872 0.94553 1.86284 1.34490 1.11582 1.87871 1.22712 0.92426 0.86424 1.00728 1.21744 1.01025 0.94121 1.03914 1.20245 0.93843 0.95764 1.16578 0.91750 0.90639 0.91672 0.92256 0.92132 0.86237 0.85385 0.95760 0.95454 0.92834 0.92719 0.92384 0.91690 0.91016 0.91098 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.63 5.46 37.16 0.20 0.84 16 3 O -0.32 -4.95 10.13 -19.42 -0.20 -5.15 16 4 C 0.14 2.42 6.68 -39.24 -0.26 2.16 16 5 C -0.24 -4.17 9.04 -39.41 -0.36 -4.53 16 6 C -0.05 -0.99 9.67 -39.63 -0.38 -1.38 16 7 C -0.09 -2.11 5.08 -104.45 -0.53 -2.64 16 8 C 0.03 0.68 3.89 -29.04 -0.11 0.56 16 9 C -0.50 -14.69 9.65 -34.44 -0.33 -15.03 16 10 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 13 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 17 C 0.17 3.49 6.66 -39.24 -0.26 3.23 16 18 O -0.29 -6.00 9.27 -19.40 -0.18 -6.18 16 19 C 0.05 0.81 5.46 37.16 0.20 1.01 16 20 C -0.15 -2.00 10.28 37.16 0.38 -1.62 16 21 C -0.24 -4.49 8.97 -39.29 -0.35 -4.84 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 28 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 30 H 0.03 0.70 7.11 -51.93 -0.37 0.33 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 33 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -33.09 308.83 -6.67 -39.77 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.54 Total: -1.64 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.52 Total: -21.24 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.77 Total: -27.62 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.38 Total: -11.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.09 -6.67 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396107800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.523 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds