Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38203 * 120.10822 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97353 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47459 * 265.00169 * 8 7 6 10 10 H 1.07994 * 119.99526 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00110 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99704 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99958 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47000 * 89.99566 * 13 11 9 15 15 H 1.48495 * 109.46632 * 209.99516 * 13 11 9 16 16 H 1.48499 * 109.47007 * 329.99761 * 13 11 9 17 17 C 1.38753 * 120.05526 * 0.02562 * 7 6 5 18 18 O 1.35892 * 120.02924 * 180.02562 * 17 7 6 19 19 C 1.42899 * 117.00358 * 179.97438 * 18 17 7 20 20 C 1.52999 * 109.47416 * 180.02562 * 19 18 17 21 21 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 27 27 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 28 28 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.47206 * 25.00118 * 8 7 6 30 30 H 1.08999 * 109.47591 * 145.00348 * 8 7 6 31 31 H 0.96995 * 119.99555 * 179.97438 * 12 11 9 32 32 H 1.08999 * 109.47332 * 300.00881 * 19 18 17 33 33 H 1.09001 * 109.46607 * 60.00283 * 19 18 17 34 34 H 1.08996 * 109.46811 * 60.00595 * 20 19 18 35 35 H 1.09002 * 109.46875 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47368 * 300.00588 * 20 19 18 37 37 H 1.08005 * 120.04688 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0039 9 6 8.0792 2.2613 1.4109 10 1 7.3750 2.2419 2.2295 11 6 9.4212 2.4563 1.6603 12 7 9.8435 2.6201 2.8950 13 14 10.6391 2.4893 0.2444 14 1 10.7833 3.8814 -0.2522 15 1 11.9573 1.9921 0.7138 16 1 10.1449 1.6207 -0.8540 17 6 5.2591 2.9843 -0.0011 18 8 5.7821 4.2386 -0.0022 19 6 4.8567 5.3274 -0.0016 20 6 5.6255 6.6502 -0.0036 21 6 3.8841 2.8059 -0.0064 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7868 -0.5730 0.0003 28 1 6.2259 -0.2522 -0.0020 29 1 8.0743 1.1971 -0.4389 30 1 7.8469 2.9557 -0.5936 31 1 10.7876 2.7569 3.0704 32 1 4.2287 5.2711 -0.8907 33 1 4.2309 5.2718 0.8892 34 1 6.2508 6.7055 -0.8946 35 1 4.9195 7.4807 -0.0027 36 1 6.2537 6.7068 0.8853 37 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396107800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = -85.025378 kcal Electronic energy + Delta-G solvation = -18160.733033 eV Core-core repulsion = 15288.617385 eV Total energy + Delta-G solvation = -2872.115648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44346 -39.96443 -37.81305 -35.20111 -33.38509 -32.61070 -32.01016 -30.72567 -28.61363 -25.08240 -24.92049 -24.06238 -22.20426 -21.77096 -19.69242 -18.93760 -17.50427 -17.21890 -17.11966 -16.81528 -16.68241 -15.93365 -15.18734 -14.84622 -14.45756 -14.34726 -14.31879 -13.78194 -13.57868 -13.38419 -13.35712 -13.24003 -12.83081 -12.64332 -12.35518 -12.30043 -11.95076 -11.84797 -11.71984 -11.63420 -11.45850 -11.18714 -10.74228 -9.49509 -8.72765 -8.25217 -6.27825 0.44690 0.56904 1.36987 1.38649 1.50709 2.17449 2.38632 2.48020 2.84744 3.09304 3.86617 4.06522 4.07101 4.09844 4.09928 4.17685 4.29038 4.35745 4.41609 4.47610 4.54376 4.66215 4.89569 4.91936 4.94538 4.97595 5.03206 5.12427 5.22537 5.24486 5.32920 5.45997 5.58638 5.72928 5.84358 6.30518 6.43630 6.64476 6.76031 7.34086 8.91868 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.006221 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.778794 B = 4500.030788 C = 5419.521509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.147 3.853 5 C -0.239 4.239 6 C -0.054 4.054 7 C -0.142 4.142 8 C 0.038 3.962 9 C -0.506 4.506 10 H 0.022 0.978 11 C 0.007 3.993 12 N -0.953 5.953 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.245 1.245 17 C 0.154 3.846 18 O -0.324 6.324 19 C 0.043 3.957 20 C -0.147 4.147 21 C -0.250 4.250 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.031 0.969 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 -1.526 -9.589 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.243 6.243 4 C 0.101 3.899 5 C -0.257 4.257 6 C -0.072 4.072 7 C -0.143 4.143 8 C 0.001 3.999 9 C -0.544 4.544 10 H 0.040 0.960 11 C -0.189 4.189 12 N -0.594 5.594 13 Si 0.772 3.228 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.169 1.169 17 C 0.108 3.892 18 O -0.238 6.238 19 C -0.032 4.032 20 C -0.204 4.204 21 C -0.269 4.269 22 H 0.084 0.916 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.687 -1.285 -9.490 19.239 hybrid contribution 0.797 0.049 0.160 0.815 sum -15.889 -1.236 -9.330 18.467 Atomic orbital electron populations 1.21797 0.91069 1.04256 1.03198 1.23107 0.97060 0.80738 1.02347 1.86002 1.18127 1.31503 1.88643 1.18583 0.82737 0.93257 0.95304 1.21275 0.93212 0.98903 1.12335 1.20844 0.95062 0.95674 0.95620 1.19589 0.96391 0.91878 1.06405 1.18347 0.89384 0.96760 0.95432 1.21128 0.92764 1.48388 0.92082 0.95981 1.25929 1.00377 0.94235 0.98374 1.70065 1.15980 1.51781 1.21574 0.85681 0.77760 0.79502 0.79872 1.19490 1.20596 1.16863 1.18640 0.90952 0.84761 0.94887 1.86231 1.36992 1.12535 1.88030 1.23068 0.92481 0.85640 1.02003 1.21794 1.01517 0.94370 1.02739 1.20412 0.93027 0.97167 1.16290 0.91606 0.87992 0.91992 0.90873 0.91533 0.82815 0.84400 0.95037 0.96158 0.92539 0.90406 0.91928 0.91834 0.87226 0.93243 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.81 5.46 71.98 0.39 1.21 16 3 O -0.33 -9.23 10.13 -92.39 -0.94 -10.17 16 4 C 0.15 4.85 6.68 22.49 0.15 5.00 16 5 C -0.24 -7.67 9.04 22.38 0.20 -7.47 16 6 C -0.05 -2.07 9.67 22.24 0.22 -1.85 16 7 C -0.14 -6.44 5.08 -19.75 -0.10 -6.54 16 8 C 0.04 1.95 3.89 29.10 0.11 2.06 16 9 C -0.51 -30.93 9.65 25.60 0.25 -30.69 16 10 H 0.02 1.51 7.98 -2.91 -0.02 1.48 16 11 C 0.01 0.42 5.47 84.66 0.46 0.89 16 12 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 13 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 17 C 0.15 6.51 6.66 22.49 0.15 6.66 16 18 O -0.32 -13.76 9.27 -92.33 -0.86 -14.61 16 19 C 0.04 1.29 5.46 71.98 0.39 1.68 16 20 C -0.15 -3.80 10.28 71.98 0.74 -3.06 16 21 C -0.25 -8.93 8.97 22.46 0.20 -8.73 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.24 7.66 -2.39 -0.02 1.23 16 26 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 27 H 0.15 3.78 6.29 -2.91 -0.02 3.76 16 28 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.03 1.53 7.11 -2.38 -0.02 1.52 16 30 H 0.02 1.05 7.11 -2.39 -0.02 1.03 16 31 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 32 H 0.08 1.96 7.65 -2.39 -0.02 1.94 16 33 H 0.06 1.79 7.67 -2.39 -0.02 1.77 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.15 4.48 6.30 -2.91 -0.02 4.47 16 Total: -1.00 -74.44 308.83 5.29 -69.16 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.99 Total: 11.38 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 3.91 Total: -42.14 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.30 Total: -61.48 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.79 Total: -24.78 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -74.44 5.29 -69.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396107800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.869 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds