Wall clock time and date at job start Mon Mar 30 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99592 * 2 1 4 4 C 1.53002 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46990 * 175.00203 * 4 3 2 6 6 C 1.53002 * 109.47022 * 54.99690 * 4 3 2 7 7 O 1.42901 * 109.46663 * 295.00190 * 4 3 2 8 8 C 1.42907 * 113.99513 * 209.99768 * 7 4 3 9 9 C 1.50699 * 109.47018 * 180.02562 * 8 7 4 10 10 C 1.38636 * 119.75289 * 89.99658 * 9 8 7 11 11 C 1.37615 * 120.25185 * 179.70401 * 10 9 8 12 12 C 1.40720 * 119.74367 * 0.27407 * 11 10 9 13 13 C 1.41400 * 120.24537 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99966 * 204.38968 * 13 12 11 15 15 C 1.39950 * 119.99539 * 24.39535 * 13 12 11 16 16 N 1.30819 * 120.00082 * 17.85436 * 15 13 12 17 17 Si 1.86800 * 119.99528 * 197.85557 * 15 13 12 18 18 H 1.48492 * 109.47384 * 59.99611 * 17 15 13 19 19 H 1.48500 * 109.46729 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46863 * 299.99545 * 17 15 13 21 21 C 1.40718 * 119.51008 * 0.02562 * 12 11 10 22 22 C 1.37614 * 119.74514 * 359.97438 * 21 12 11 23 23 H 1.09007 * 109.46204 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47660 * 299.99787 * 1 2 3 25 25 H 1.09004 * 109.47234 * 60.00795 * 1 2 3 26 26 H 1.08998 * 109.47206 * 60.00037 * 3 2 1 27 27 H 1.08996 * 109.47248 * 299.99994 * 3 2 1 28 28 H 1.09000 * 109.46956 * 180.02562 * 6 4 3 29 29 H 1.09004 * 109.47090 * 300.00413 * 6 4 3 30 30 H 1.09006 * 109.46807 * 60.00480 * 6 4 3 31 31 H 1.08995 * 109.47064 * 59.99986 * 8 7 4 32 32 H 1.09000 * 109.47272 * 299.99530 * 8 7 4 33 33 H 1.08001 * 119.87542 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.13427 * 180.30023 * 11 10 9 35 35 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 36 36 H 1.08006 * 120.12519 * 180.02562 * 21 12 11 37 37 H 1.08007 * 119.87423 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 1 3.9783 2.1768 -0.0889 6 6 3.9790 0.3196 -1.1806 7 8 3.9647 0.5799 1.2220 8 6 5.2613 0.9983 1.6534 9 6 5.6108 0.3013 2.9430 10 6 6.2683 -0.9187 2.9094 11 6 6.5978 -1.5613 4.0809 12 6 6.2595 -0.9780 5.3160 13 6 6.5934 -1.6287 6.5262 14 1 6.0275 -1.4246 7.4230 15 6 7.6574 -2.5371 6.5617 16 7 8.5521 -2.5343 5.6072 17 14 7.7999 -3.7538 7.9719 18 1 6.5911 -4.6155 8.0064 19 1 9.0054 -4.5987 7.7767 20 1 7.9171 -3.0138 9.2541 21 6 5.5865 0.2576 5.3379 22 6 5.2671 0.8822 4.1540 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 5.0656 0.2333 -1.1799 29 1 3.5360 -0.6723 -1.0910 30 1 3.6515 0.7811 -2.1123 31 1 5.2612 2.0768 1.8113 32 1 5.9978 0.7426 0.8916 33 1 6.5269 -1.3645 1.9603 34 1 7.1144 -2.5093 4.0525 35 1 9.2893 -3.1642 5.6317 36 1 5.3225 0.7144 6.2803 37 1 4.7509 1.8308 4.1684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398954387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:01 Heat of formation + Delta-G solvation = -84.295354 kcal Electronic energy + Delta-G solvation = -17746.729593 eV Core-core repulsion = 14874.645601 eV Total energy + Delta-G solvation = -2872.083992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.62241 -37.62282 -36.62931 -33.79530 -31.93520 -30.11532 -29.21620 -27.34831 -26.70397 -25.59907 -23.48013 -21.01928 -20.92885 -19.94232 -17.27150 -16.91859 -16.11939 -15.63181 -15.38145 -15.15292 -14.59986 -14.31544 -13.82551 -13.32935 -13.10913 -12.60087 -12.51284 -12.22298 -11.92218 -11.82425 -11.74117 -11.40201 -11.18947 -11.01000 -10.95412 -10.69778 -10.41146 -10.33210 -9.65447 -9.53946 -9.37137 -9.13393 -9.02083 -7.42071 -7.31039 -6.75380 -4.34061 2.73229 3.07591 3.10024 3.12995 3.18604 3.82733 3.94172 4.19855 4.71541 4.94366 5.12984 5.22641 5.30149 5.37687 5.40643 5.63613 5.68844 5.74415 5.79050 5.85333 5.91613 6.09110 6.24128 6.40312 6.44010 6.46495 6.98466 7.08927 7.17750 7.32131 7.40240 7.64593 7.76066 7.92333 8.07824 8.16429 8.32207 8.66368 8.91066 9.00176 10.19136 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.004178 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.596341 B = 6700.759751 C = 6881.436808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.066 3.934 4 C 0.083 3.917 5 H 0.066 0.934 6 C -0.169 4.169 7 O -0.366 6.366 8 C 0.126 3.874 9 C -0.221 4.221 10 C -0.079 4.079 11 C -0.169 4.169 12 C 0.116 3.884 13 C -0.462 4.462 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.791 5.791 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.231 4.231 22 C -0.070 4.070 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.092 0.908 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 5.132 -9.765 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.011 4.011 4 C 0.025 3.975 5 H 0.084 0.916 6 C -0.226 4.226 7 O -0.286 6.286 8 C 0.051 3.949 9 C -0.222 4.222 10 C -0.098 4.098 11 C -0.189 4.189 12 C 0.113 3.887 13 C -0.492 4.492 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.416 5.416 17 Si 0.733 3.267 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.250 4.250 22 C -0.088 4.088 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.089 4.722 -9.729 13.505 hybrid contribution 0.113 -0.081 0.442 0.463 sum -7.976 4.641 -9.288 13.093 Atomic orbital electron populations 1.22720 0.81744 1.02632 0.99496 1.88003 1.18907 1.27192 1.95226 1.22653 0.93083 0.85306 1.00033 1.22054 0.92394 0.96164 0.86921 0.91600 1.22169 1.01442 1.02035 0.96974 1.88234 1.34693 1.67821 1.37855 1.21167 0.83424 0.96007 0.94340 1.18757 1.11748 0.99863 0.91849 1.20525 0.98101 0.94208 0.96925 1.21293 1.05298 1.00971 0.91298 1.17646 0.88294 0.89538 0.93187 1.19596 1.12771 1.20403 0.96388 0.90414 1.25925 0.94368 0.96750 0.97111 1.69823 1.08773 1.31264 1.31776 0.86365 0.78527 0.80381 0.81434 1.18769 1.20323 1.19005 1.20943 1.10798 0.97549 0.95738 1.20352 0.98139 0.97765 0.92575 0.89760 0.94172 0.94606 0.92766 0.92709 0.92591 0.90919 0.92565 0.94553 0.94355 0.89486 0.86390 0.90788 0.88971 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.51 9.79 -40.08 -0.39 -5.91 16 3 C 0.07 0.85 5.81 37.16 0.22 1.06 16 4 C 0.08 1.19 3.13 -26.73 -0.08 1.10 16 5 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 6 C -0.17 -2.22 9.33 37.16 0.35 -1.87 16 7 O -0.37 -7.02 9.94 -40.08 -0.40 -7.42 16 8 C 0.13 2.40 5.86 36.01 0.21 2.61 16 9 C -0.22 -5.14 5.53 -104.33 -0.58 -5.71 16 10 C -0.08 -1.95 9.67 -39.66 -0.38 -2.33 16 11 C -0.17 -4.56 8.70 -38.87 -0.34 -4.90 16 12 C 0.12 3.19 5.58 -106.82 -0.60 2.59 16 13 C -0.46 -12.52 9.05 -37.74 -0.34 -12.86 16 14 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 15 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 16 N -0.79 -20.69 10.95 55.55 0.61 -20.08 16 17 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.23 -5.88 9.80 -38.87 -0.38 -6.26 16 22 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.04 0.68 7.81 -51.93 -0.41 0.28 16 33 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.20 8.06 -52.48 -0.42 1.77 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -29.68 314.30 -7.47 -37.15 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.71 Total: 3.00 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -1.29 Total: -25.31 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.61 Total: -20.08 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.79 Total: -13.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.68 -7.47 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398954387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.143 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds