Wall clock time and date at job start Mon Mar 30 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99592 * 2 1 4 4 C 1.53002 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46990 * 175.00203 * 4 3 2 6 6 C 1.53002 * 109.47022 * 54.99690 * 4 3 2 7 7 O 1.42901 * 109.46663 * 295.00190 * 4 3 2 8 8 C 1.42907 * 113.99513 * 209.99768 * 7 4 3 9 9 C 1.50699 * 109.47018 * 180.02562 * 8 7 4 10 10 C 1.38636 * 119.75289 * 89.99658 * 9 8 7 11 11 C 1.37615 * 120.25185 * 179.70401 * 10 9 8 12 12 C 1.40720 * 119.74367 * 0.27407 * 11 10 9 13 13 C 1.41400 * 120.24537 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99966 * 204.38968 * 13 12 11 15 15 C 1.39950 * 119.99539 * 24.39535 * 13 12 11 16 16 N 1.30819 * 120.00082 * 17.85436 * 15 13 12 17 17 Si 1.86800 * 119.99528 * 197.85557 * 15 13 12 18 18 H 1.48492 * 109.47384 * 59.99611 * 17 15 13 19 19 H 1.48500 * 109.46729 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46863 * 299.99545 * 17 15 13 21 21 C 1.40718 * 119.51008 * 0.02562 * 12 11 10 22 22 C 1.37614 * 119.74514 * 359.97438 * 21 12 11 23 23 H 1.09007 * 109.46204 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47660 * 299.99787 * 1 2 3 25 25 H 1.09004 * 109.47234 * 60.00795 * 1 2 3 26 26 H 1.08998 * 109.47206 * 60.00037 * 3 2 1 27 27 H 1.08996 * 109.47248 * 299.99994 * 3 2 1 28 28 H 1.09000 * 109.46956 * 180.02562 * 6 4 3 29 29 H 1.09004 * 109.47090 * 300.00413 * 6 4 3 30 30 H 1.09006 * 109.46807 * 60.00480 * 6 4 3 31 31 H 1.08995 * 109.47064 * 59.99986 * 8 7 4 32 32 H 1.09000 * 109.47272 * 299.99530 * 8 7 4 33 33 H 1.08001 * 119.87542 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.13427 * 180.30023 * 11 10 9 35 35 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 36 36 H 1.08006 * 120.12519 * 180.02562 * 21 12 11 37 37 H 1.08007 * 119.87423 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 1 3.9783 2.1768 -0.0889 6 6 3.9790 0.3196 -1.1806 7 8 3.9647 0.5799 1.2220 8 6 5.2613 0.9983 1.6534 9 6 5.6108 0.3013 2.9430 10 6 6.2683 -0.9187 2.9094 11 6 6.5978 -1.5613 4.0809 12 6 6.2595 -0.9780 5.3160 13 6 6.5934 -1.6287 6.5262 14 1 6.0275 -1.4246 7.4230 15 6 7.6574 -2.5371 6.5617 16 7 8.5521 -2.5343 5.6072 17 14 7.7999 -3.7538 7.9719 18 1 6.5911 -4.6155 8.0064 19 1 9.0054 -4.5987 7.7767 20 1 7.9171 -3.0138 9.2541 21 6 5.5865 0.2576 5.3379 22 6 5.2671 0.8822 4.1540 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 5.0656 0.2333 -1.1799 29 1 3.5360 -0.6723 -1.0910 30 1 3.6515 0.7811 -2.1123 31 1 5.2612 2.0768 1.8113 32 1 5.9978 0.7426 0.8916 33 1 6.5269 -1.3645 1.9603 34 1 7.1144 -2.5093 4.0525 35 1 9.2893 -3.1642 5.6317 36 1 5.3225 0.7144 6.2803 37 1 4.7509 1.8308 4.1684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398954387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:00 Heat of formation + Delta-G solvation = -101.371847 kcal Electronic energy + Delta-G solvation = -17747.470086 eV Core-core repulsion = 14874.645601 eV Total energy + Delta-G solvation = -2872.824484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95495 -39.19489 -37.94873 -35.66492 -33.25848 -31.82621 -31.15897 -28.53900 -28.18423 -26.55414 -25.24052 -22.90551 -22.07408 -21.80994 -19.23817 -18.04987 -17.28389 -17.09804 -16.81677 -16.31917 -16.02295 -15.82744 -15.54815 -14.91303 -14.52784 -14.15348 -13.83913 -13.73426 -13.36851 -13.34114 -12.98289 -12.85796 -12.69157 -12.66372 -12.36372 -12.07580 -12.00110 -11.67152 -11.39709 -11.27932 -11.00594 -10.56336 -10.37367 -9.38985 -9.27735 -8.65775 -6.36185 0.88818 1.13846 1.37726 1.48828 1.52670 2.20374 2.61337 2.94136 3.09548 3.78011 3.94941 4.11985 4.26269 4.30336 4.37237 4.43978 4.54154 4.55995 4.56356 4.61906 4.64499 4.77854 4.86342 4.89988 5.02506 5.03426 5.14559 5.34774 5.40151 5.44815 5.69077 5.93128 6.08434 6.21931 6.27102 6.36161 6.54601 6.67952 6.91778 7.01683 8.31484 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.004178 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.596341 B = 6700.759751 C = 6881.436808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.064 3.936 4 C 0.072 3.928 5 H 0.093 0.907 6 C -0.164 4.164 7 O -0.397 6.397 8 C 0.132 3.868 9 C -0.219 4.219 10 C -0.088 4.088 11 C -0.194 4.194 12 C 0.083 3.917 13 C -0.502 4.502 14 H 0.077 0.923 15 C 0.035 3.965 16 N -0.823 5.823 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.257 1.257 21 C -0.248 4.248 22 C -0.073 4.073 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 6.132 -10.747 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.013 4.013 4 C 0.015 3.985 5 H 0.111 0.889 6 C -0.222 4.222 7 O -0.317 6.317 8 C 0.056 3.944 9 C -0.220 4.220 10 C -0.106 4.106 11 C -0.214 4.214 12 C 0.081 3.919 13 C -0.531 4.531 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.448 5.448 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.182 1.182 21 C -0.267 4.267 22 C -0.091 4.091 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.866 5.741 -10.731 15.057 hybrid contribution 0.266 -0.294 0.595 0.715 sum -8.600 5.448 -10.135 14.365 Atomic orbital electron populations 1.22889 0.79974 1.03433 1.00753 1.87954 1.21029 1.28533 1.95514 1.22778 0.91999 0.84947 1.01560 1.22441 0.93646 0.97284 0.85134 0.88912 1.22125 1.01078 1.00928 0.98022 1.88162 1.34218 1.69016 1.40318 1.21063 0.84158 0.96702 0.92454 1.19274 1.09714 0.99010 0.94018 1.20788 0.98077 0.94982 0.96798 1.21271 1.06765 1.01045 0.92309 1.18009 0.89487 0.90706 0.93720 1.19864 1.14174 1.22570 0.96482 0.90493 1.26804 0.93308 0.97900 0.99969 1.69874 1.09302 1.32062 1.33606 0.85226 0.78777 0.77658 0.77884 1.18613 1.18971 1.18151 1.21184 1.11078 0.97346 0.97097 1.20714 0.97618 0.98772 0.92012 0.89350 0.93945 0.92225 0.93071 0.89206 0.92875 0.93249 0.89615 0.92081 0.93166 0.87987 0.88071 0.90006 0.88210 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.44 9.79 -144.34 -1.41 -12.85 16 3 C 0.06 1.45 5.81 71.98 0.42 1.87 16 4 C 0.07 1.86 3.13 30.60 0.10 1.96 16 5 H 0.09 1.89 7.79 -2.39 -0.02 1.87 16 6 C -0.16 -3.94 9.33 71.98 0.67 -3.26 16 7 O -0.40 -14.44 9.94 -144.34 -1.43 -15.87 16 8 C 0.13 4.71 5.86 71.24 0.42 5.13 16 9 C -0.22 -9.99 5.53 -19.67 -0.11 -10.09 16 10 C -0.09 -4.39 9.67 22.22 0.21 -4.18 16 11 C -0.19 -10.86 8.70 22.73 0.20 -10.66 16 12 C 0.08 4.73 5.58 -21.29 -0.12 4.61 16 13 C -0.50 -28.12 9.05 23.46 0.21 -27.91 16 14 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 15 C 0.04 1.84 5.14 85.26 0.44 2.28 16 16 N -0.82 -44.19 10.95 21.83 0.24 -43.95 16 17 Si 0.98 39.05 29.60 68.60 2.03 41.08 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 C -0.25 -12.81 9.80 22.73 0.22 -12.59 16 22 C -0.07 -3.38 9.67 22.22 0.21 -3.17 16 23 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 29 H 0.05 1.41 7.56 -2.39 -0.02 1.39 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 32 H 0.05 1.66 7.81 -2.39 -0.02 1.65 16 33 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.86 6.16 -2.91 -0.02 5.85 16 35 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 36 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -65.82 314.30 4.58 -61.24 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.03 Total: 24.63 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 4.12 Total: -54.27 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.24 Total: -43.95 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -2.85 Total: -28.73 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -65.82 4.58 -61.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398954387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.132 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds