Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47500 * 2 1 4 4 C 1.42902 * 114.00020 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47052 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47052 * 64.99858 * 5 4 3 7 7 C 1.42902 * 114.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47264 * 179.97438 * 7 6 5 9 9 C 1.38632 * 119.75213 * 269.72235 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08998 * 109.47364 * 59.99431 * 1 2 3 23 23 H 1.08995 * 109.47767 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46783 * 300.00070 * 1 2 3 25 25 H 1.09005 * 109.46783 * 239.99930 * 2 1 3 26 26 H 1.09003 * 109.47151 * 120.00119 * 2 1 3 27 27 H 1.08995 * 109.47056 * 59.99764 * 4 3 2 28 28 H 1.09001 * 109.46744 * 299.99865 * 4 3 2 29 29 H 1.09002 * 109.47121 * 304.99990 * 5 4 3 30 30 H 1.08991 * 109.47294 * 184.99691 * 5 4 3 31 31 H 1.08998 * 109.47199 * 59.99761 * 7 6 5 32 32 H 1.09001 * 109.47096 * 299.99734 * 7 6 5 33 33 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 35 35 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 36 36 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 8 3.3987 3.5456 1.2199 7 6 3.7195 4.9344 1.3214 8 6 3.2252 5.4691 2.6407 9 6 1.9475 5.9991 2.7330 10 6 1.4835 6.4849 3.9340 11 6 2.3158 6.4532 5.0683 12 6 1.8523 6.9558 6.3060 13 1 2.2810 6.5958 7.2295 14 6 0.8379 7.9195 6.3342 15 7 0.5585 8.6068 5.2568 16 14 -0.1170 8.2244 7.9105 17 1 0.4993 9.3539 8.6519 18 1 -1.5252 8.5595 7.5791 19 1 -0.0842 7.0024 8.7534 20 6 3.6128 5.9183 4.9616 21 6 4.0534 5.4320 3.7519 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8333 0.9765 -0.8907 28 1 3.8340 0.9763 0.8892 29 1 3.3494 3.4410 -0.8430 30 1 4.9082 3.0252 -0.0911 31 1 3.2409 5.4784 0.5070 32 1 4.8001 5.0633 1.2586 33 1 1.3123 6.0271 1.8599 34 1 0.4862 6.8932 4.0048 35 1 -0.1444 9.2750 5.2765 36 1 4.2602 5.8893 5.8256 37 1 5.0484 5.0205 3.6677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399172679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -87.457560 kcal Electronic energy + Delta-G solvation = -17460.250655 eV Core-core repulsion = 14588.029539 eV Total energy + Delta-G solvation = -2872.221116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.38792 -37.69445 -36.59143 -33.74626 -31.87358 -30.54263 -29.24999 -28.85801 -26.54034 -23.45173 -22.81022 -22.36668 -20.94734 -19.92094 -17.27146 -16.92931 -16.59588 -15.49359 -15.42498 -15.09723 -14.91209 -14.11569 -13.73179 -13.51976 -13.17549 -12.73829 -12.55253 -12.24173 -11.89605 -11.75578 -11.52510 -11.43064 -11.22741 -11.11351 -10.97780 -10.77998 -10.41160 -10.38954 -9.61473 -9.52767 -9.37121 -9.15747 -9.04604 -7.41621 -7.30730 -6.75221 -4.33748 2.72397 3.08286 3.11428 3.13231 3.18129 3.68877 3.94483 4.21840 4.72134 4.97019 5.03553 5.23520 5.27565 5.29247 5.45708 5.46947 5.69582 5.77378 5.78321 5.86776 5.87659 5.95957 6.08884 6.22624 6.42016 6.45875 6.98793 7.09209 7.23365 7.32288 7.40309 7.65058 7.72374 7.91708 8.08248 8.16760 8.32433 8.66746 8.91354 9.00386 10.19448 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.004202 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.231326 B = 6662.234769 C = 7287.541366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.067 3.933 5 C 0.060 3.940 6 O -0.375 6.375 7 C 0.128 3.872 8 C -0.221 4.221 9 C -0.079 4.079 10 C -0.169 4.169 11 C 0.116 3.884 12 C -0.462 4.462 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.230 4.230 21 C -0.070 4.070 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.092 0.908 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -10.619 -9.012 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.017 4.017 6 O -0.294 6.294 7 C 0.052 3.948 8 C -0.223 4.223 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.113 3.887 12 C -0.491 4.491 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.250 4.250 21 C -0.089 4.089 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.817 -10.352 -8.951 13.805 hybrid contribution -0.080 0.141 0.406 0.437 sum 1.737 -10.211 -8.545 13.428 Atomic orbital electron populations 1.21733 0.93823 1.01904 1.03435 1.22432 0.95739 0.84229 0.99603 1.88017 1.20635 1.25745 1.95284 1.22508 0.82069 0.96208 1.00224 1.22406 0.97717 0.92374 0.89236 1.88156 1.80842 1.24317 1.36124 1.21107 0.96977 0.80501 0.96180 1.18757 0.97370 1.12324 0.93811 1.20536 0.94150 0.98116 0.96921 1.21287 1.00347 1.04726 0.92464 1.17648 0.89854 0.88077 0.93097 1.19619 1.16430 1.19273 0.93801 0.90389 1.25926 0.96056 0.94321 0.97859 1.69832 1.25846 1.16435 1.29533 0.86317 0.79029 0.79539 0.81954 1.19583 1.20008 1.18393 1.20944 0.96684 1.11136 0.96240 1.20359 0.97144 0.98381 0.92983 0.91988 0.91377 0.91474 0.93917 0.93487 0.92530 0.92575 0.93118 0.92512 0.94300 0.94511 0.89433 0.86425 0.90859 0.88950 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.64 6.66 37.16 0.25 0.89 16 3 O -0.38 -5.72 10.31 -40.09 -0.41 -6.13 16 4 C 0.07 0.86 6.32 37.16 0.23 1.09 16 5 C 0.06 0.86 6.32 37.16 0.23 1.09 16 6 O -0.37 -7.29 10.29 -40.09 -0.41 -7.71 16 7 C 0.13 2.47 6.05 36.00 0.22 2.69 16 8 C -0.22 -5.19 5.53 -104.33 -0.58 -5.77 16 9 C -0.08 -1.96 9.67 -39.66 -0.38 -2.34 16 10 C -0.17 -4.57 8.70 -38.87 -0.34 -4.91 16 11 C 0.12 3.19 5.57 -106.83 -0.60 2.59 16 12 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 13 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 14 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 15 N -0.79 -20.75 10.97 55.55 0.61 -20.14 16 16 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 20 C -0.23 -5.88 9.80 -38.88 -0.38 -6.26 16 21 C -0.07 -1.66 9.67 -39.66 -0.38 -2.05 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 34 H 0.12 3.26 6.18 -52.49 -0.32 2.93 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -29.98 317.23 -8.02 -38.01 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.79 Total: 2.53 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.77 Total: -25.16 kcal Atomic # 7 Polarization: -20.75 SS G_CDS: 0.61 Total: -20.14 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.83 Total: -13.84 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.98 -8.02 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399172679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.452 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds